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test_cohesive_parallel_intrinsic_implicit_insertion.cc
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rAKA akantu
test_cohesive_parallel_intrinsic_implicit_insertion.cc
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/**
* @file test_cohesive_parallel_intrinsic_implicit_insertion.cc
*
* @author Fabian Barras <fabian.barras@epfl.ch>
* @author Mauro Corrado <mauro.corrado@epfl.ch>
*
* @date creation: Wed Nov 05 2014
* @date last modification: Wed Nov 08 2017
*
* @brief Verifying the proper insertion and synchronization of intrinsic
* cohesive elements
*
*
* Copyright (©) 2015-2018 EPFL (Ecole Polytechnique Fédérale de Lausanne)
* Laboratory (LSMS - Laboratoire de Simulation en Mécanique des Solides)
*
* Akantu is free software: you can redistribute it and/or modify it under the
* terms of the GNU Lesser General Public License as published by the Free
* Software Foundation, either version 3 of the License, or (at your option) any
* later version.
*
* Akantu is distributed in the hope that it will be useful, but WITHOUT ANY
* WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR
* A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more
* details.
*
* You should have received a copy of the GNU Lesser General Public License
* along with Akantu. If not, see <http://www.gnu.org/licenses/>.
*
*/
/* -------------------------------------------------------------------------- */
#include <fstream>
#include <iostream>
#include <limits>
/* -------------------------------------------------------------------------- */
#include "aka_common.hh"
#include "material.hh"
#include "material_cohesive.hh"
#include "mesh.hh"
#include "mesh_io.hh"
#include "mesh_io_msh.hh"
#include "mesh_utils.hh"
#include "solid_mechanics_model_cohesive.hh"
/* -------------------------------------------------------------------------- */
using
namespace
akantu
;
std
::
ofstream
output
;
/* -------------------------------------------------------------------------- */
void
printMeshContent
(
Mesh
&
mesh
)
{
const
auto
&
comm
=
Communicator
::
getStaticCommunicator
();
Int
prank
=
comm
.
whoAmI
();
comm
.
barrier
();
for
(
ghost_type_t
::
iterator
gt
=
ghost_type_t
::
begin
();
gt
!=
ghost_type_t
::
end
();
++
gt
)
{
Mesh
::
type_iterator
first
=
mesh
.
firstType
(
_all_dimensions
,
*
gt
,
_ek_not_defined
);
Mesh
::
type_iterator
last
=
mesh
.
lastType
(
_all_dimensions
,
*
gt
,
_ek_not_defined
);
for
(;
first
!=
last
;
++
first
)
{
UInt
nb_element
=
mesh
.
getNbElement
(
*
first
,
*
gt
);
output
<<
std
::
endl
<<
"Element type: "
<<
*
first
<<
", "
<<
*
gt
<<
": "
<<
nb_element
<<
" in the mesh of processor "
<<
prank
<<
std
::
endl
;
Array
<
UInt
>
&
conn
=
mesh
.
getConnectivity
(
*
first
,
*
gt
);
for
(
UInt
i
=
0
;
i
<
conn
.
getSize
();
++
i
)
{
output
<<
"Element no "
<<
i
<<
" "
;
for
(
UInt
j
=
0
;
j
<
conn
.
getNbComponent
();
++
j
)
{
output
<<
conn
(
i
,
j
)
<<
" "
;
}
output
<<
std
::
endl
;
}
}
}
}
/* -------------------------------------------------------------------------- */
void
printNodeList
(
Mesh
&
mesh
)
{
Array
<
double
>
&
nodes
=
mesh
.
getNodes
();
output
<<
"Number of nodes: "
<<
mesh
.
getNbNodes
()
<<
std
::
endl
;
for
(
UInt
i
=
0
;
i
<
mesh
.
getNbNodes
();
++
i
)
{
output
<<
"Node # "
<<
i
<<
", x-coord: "
<<
nodes
(
i
,
0
)
<<
", y-coord: "
<<
nodes
(
i
,
1
)
<<
", of type: "
<<
mesh
.
getNodeType
(
i
)
<<
std
::
endl
;
}
output
<<
std
::
endl
;
}
/* -------------------------------------------------------------------------- */
void
getGlobalIDs
(
Mesh
&
mesh
)
{
const
Array
<
UInt
>
&
glob_id
=
mesh
.
getGlobalNodesIds
();
if
(
&
glob_id
)
{
output
<<
"Global nodes ID: "
<<
std
::
endl
;
for
(
UInt
i
=
0
;
i
<
glob_id
.
getSize
();
++
i
)
{
output
<<
i
<<
" "
<<
glob_id
(
i
)
<<
std
::
endl
;
}
}
output
<<
std
::
endl
;
}
/* -------------------------------------------------------------------------- */
void
printSynchroinfo
(
Mesh
&
mesh
,
const
DistributedSynchronizer
&
synch
)
{
const
auto
&
comm
=
Communicator
::
getStaticCommunicator
();
Int
prank
=
comm
.
whoAmI
();
Int
psize
=
comm
.
getNbProc
();
if
(
comm
.
getNbProc
()
==
1
)
return
;
for
(
Int
p
=
0
;
p
<
psize
;
++
p
)
{
if
(
p
==
prank
)
continue
;
output
<<
"From processor "
<<
prank
<<
" to processor "
<<
p
<<
std
::
endl
;
const
Array
<
Element
>
&
sele
=
*
(
synch
.
getSendElement
()
+
p
);
output
<<
" Sending element(s): "
<<
std
::
endl
;
for
(
UInt
i
=
0
;
i
<
sele
.
getSize
();
++
i
)
{
output
<<
sele
(
i
)
<<
std
::
endl
;
}
const
Array
<
Element
>
&
rele
=
*
(
synch
.
getReceiveElement
()
+
p
);
output
<<
" Receiving element(s): "
<<
std
::
endl
;
for
(
UInt
i
=
0
;
i
<
rele
.
getSize
();
++
i
)
{
output
<<
rele
(
i
)
<<
std
::
endl
;
}
}
output
<<
std
::
endl
;
}
/* -------------------------------------------------------------------------- */
void
printDOF
(
SolidMechanicsModelCohesive
&
model
)
{
const
auto
&
comm
=
Communicator
::
getStaticCommunicator
();
if
(
comm
.
getNbProc
()
==
1
)
return
;
Int
prank
=
comm
.
whoAmI
();
const
DOFSynchronizer
&
dof
=
model
.
getDOFSynchronizer
();
output
<<
"Number of global dofs "
<<
dof
.
getNbGlobalDOFs
()
<<
" for processor "
<<
prank
<<
std
::
endl
;
const
Array
<
UInt
>
&
dof_global_ids
=
dof
.
getDOFGlobalIDs
();
for
(
UInt
i
=
0
;
i
<
dof_global_ids
.
getSize
();
++
i
)
{
output
<<
"Local dof "
<<
i
<<
", global id: "
<<
dof_global_ids
(
i
)
<<
std
::
endl
;
}
output
<<
std
::
endl
;
}
/* -------------------------------------------------------------------------- */
int
main
(
int
argc
,
char
*
argv
[])
{
std
::
string
input_file
=
"input_file_iii.dat"
;
std
::
string
mesh_file
=
"2d_basic_interface.msh"
;
std
::
string
dir
=
"output_dir/"
;
initialize
(
input_file
,
argc
,
argv
);
debug
::
setDebugLevel
(
dbl0
);
const
UInt
spatial_dimension
=
2
;
Mesh
mesh
(
spatial_dimension
);
const
auto
&
comm
=
Communicator
::
getStaticCommunicator
();
Int
psize
=
comm
.
getNbProc
();
Int
prank
=
comm
.
whoAmI
();
akantu
::
MeshPartition
*
partition
=
NULL
;
std
::
stringstream
filename
;
filename
<<
dir
.
c_str
()
<<
"output_from_proc_"
<<
prank
<<
"_out_of_"
<<
psize
<<
".out"
;
output
.
open
(
filename
.
str
());
if
(
prank
==
0
)
{
mesh
.
read
(
mesh_file
);
partition
=
new
MeshPartitionScotch
(
mesh
,
spatial_dimension
);
partition
->
partitionate
(
psize
);
const
ElementTypeMapArray
<
UInt
>
&
partitions
=
partition
->
getPartitions
();
output
<<
"The root processor read the mesh."
<<
std
::
endl
<<
"Only GMSH physical objects are created in the mesh."
<<
std
::
endl
;
for
(
ghost_type_t
::
iterator
gt
=
ghost_type_t
::
begin
();
gt
!=
ghost_type_t
::
end
();
++
gt
)
{
Mesh
::
type_iterator
first
=
mesh
.
firstType
(
_all_dimensions
,
*
gt
);
Mesh
::
type_iterator
last
=
mesh
.
lastType
(
_all_dimensions
,
*
gt
);
for
(;
first
!=
last
;
++
first
)
{
output
<<
"Element type: "
<<
*
first
<<
" ghost type: "
<<
*
gt
<<
std
::
endl
;
UInt
nb_element
=
mesh
.
getNbElement
(
*
first
,
*
gt
);
output
<<
nb_element
<<
" to partitionate between "
<<
psize
<<
" processsors"
<<
std
::
endl
;
Array
<
UInt
>
part
=
partitions
(
*
first
,
*
gt
);
for
(
UInt
i
=
0
;
i
<
part
.
getSize
();
++
i
)
{
output
<<
i
<<
" "
<<
part
(
i
)
<<
std
::
endl
;
}
}
}
output
<<
"Nodes are also read and set with type -1 (normal node)"
<<
std
::
endl
;
printNodeList
(
mesh
);
}
SolidMechanicsModelCohesive
model
(
mesh
);
output
<<
"Before initParallel(), non-root processors have empty Mesh object"
<<
std
::
endl
;
printMeshContent
(
mesh
);
model
.
initParallel
(
partition
);
output
<<
"After initParallel(), Mesh object on each processor is a local "
"partionated mesh containing ghost elements"
<<
std
::
endl
;
printMeshContent
(
mesh
);
output
<<
"Nodes are also partionated and new node types are defined:"
<<
std
::
endl
;
printNodeList
(
mesh
);
output
<<
"-3: pure ghost node -> not a local node"
<<
std
::
endl
<<
"-2: master node -> node shared with other processor(s) -> local "
"and global node"
<<
std
::
endl
<<
">0: slave node -> -> node shared with other processor(s) -> only "
"local node (its id is the rank of the processor owning the master "
"node)"
<<
std
::
endl
;
output
<<
"Each local node has a corresponding global id used during assembly: "
<<
std
::
endl
;
getGlobalIDs
(
mesh
);
Mesh
&
mesh_facets
=
mesh
.
getMeshFacets
();
output
<<
"Within cohesive element model, initParallel() creates a second "
"Mesh object usually called mesh_facet"
<<
std
::
endl
<<
"This Mesh object contains all sub-dimensional elements where "
"potential cohesive element can be inserted"
<<
std
::
endl
;
printMeshContent
(
mesh_facets
);
const
DistributedSynchronizer
&
synch_model
=
model
.
getSynchronizer
();
output
<<
"The distributed synchronizer of solid mechanics model is used to "
"synchronize fields with ghost element:"
<<
std
::
endl
;
printSynchroinfo
(
mesh
,
synch_model
);
mesh
.
createGroupsFromMeshData
<
std
::
string
>
(
"physical_names"
);
model
.
initFull
(
SolidMechanicsModelCohesiveOptions
(
_static
));
output
<<
"In case of insertion along physical objects, cohesive elements "
"are created during initFull()"
<<
std
::
endl
;
output
<<
"Elements list after insertion"
<<
std
::
endl
;
printMeshContent
(
mesh
);
output
<<
"Node list after insertion: (Total number of nodes "
<<
mesh
.
getNbNodes
()
<<
")"
<<
std
::
endl
;
printNodeList
(
mesh
);
output
<<
"Node global ids after insertion: (Total number of nodes "
<<
mesh
.
getNbGlobalNodes
()
<<
")"
<<
std
::
endl
;
getGlobalIDs
(
mesh
);
const
DistributedSynchronizer
&
coh_synch_model
=
*
(
model
.
getCohesiveSynchronizer
());
output
<<
"Solid mechanics model cohesive has its own distributed "
"synchronizer to handle ghost cohesive element:"
<<
std
::
endl
;
printSynchroinfo
(
mesh
,
coh_synch_model
);
output
<<
"A synchronizer dedicated to degrees of freedom (DOFs) is used by "
"the solver to build matrices in parallel:"
<<
std
::
endl
<<
"This DOFSynchronizer is built based on nodes global id "
<<
std
::
endl
;
printDOF
(
model
);
output
.
close
();
finalize
();
return
EXIT_SUCCESS
;
}
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