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configuration_unsaturated.cpp
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rSPECMICP SpecMiCP / ReactMiCP
configuration_unsaturated.cpp
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/* =============================================================================
Copyright (c) 2014 - 2016
F. Georget <fabieng@princeton.edu> Princeton University
All rights reserved.
Redistribution and use in source and binary forms, with or without modification,
are permitted provided that the following conditions are met:
1. Redistributions of source code must retain the above copyright notice,
this list of conditions and the following disclaimer.
2. Redistributions in binary form must reproduce the above copyright notice,
this list of conditions and the following disclaimer in the documentation
and/or other materials provided with the distribution.
3. Neither the name of the copyright holder nor the names of its
contributors may be used to endorse or promote products derived from this
software without specific prior written permission.
* THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR
ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
(INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES;
LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON
ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
(INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. *
============================================================================= */
#include "specmicp_common/io/safe_config.hpp"
#include "configuration_unsaturated.hpp"
#include "specmicp_database/data_container.hpp"
#include "specmicp/adimensional/adimensional_system_solver_structs.hpp"
#include "specmicp/io/configuration.hpp"
#include "reactmicp/systems/unsaturated/boundary_conditions.hpp"
#include "reactmicp/systems/unsaturated/equilibrium_stagger.hpp"
#include "specmicp_common/string_algorithms.hpp"
#include "specmicp_common/log.hpp"
#include "specmicp/io/print.hpp"
#define S_BCS_A_GASNODE "gas_nodes"
#define S_BCS_A_FIXEDNODE "fixed_nodes"
#define S_BCS_SS_CONSTRAINTS "constraints"
#define S_BCS_SS_CONSTRAINTS_A_DEFAULT "default"
#define S_BCS_SS_CONSTRAINTS_A_OTHERS "others"
#define S_BCS_SS_CONSTRAINTS_A_NAME "name"
#define S_BCS_SS_CONSTRAINTS_A_FORK_FROM "fork_from"
#define S_BCS_SS_CONSTRAINTS_A_NODE "nodes"
#define S_OPTIONS_SS_DEFAULT "default"
#define S_OPTIONS_SS_OTHERS "others"
#define S_OPTIONS_SS_OTHERS_A_NAME "name"
#define S_OPTIONS_SS_OTHERS_A_FORK_FROM "fork_from"
#define S_OPTIONS_SS_OTHERS_A_NODE "nodes"
namespace
specmicp
{
using
reactmicp
::
systems
::
unsaturated
::
BoundaryConditions
;
using
reactmicp
::
systems
::
unsaturated
::
EquilibriumOptionsVector
;
namespace
io
{
static
void
configure_bcs_constraints
(
BoundaryConditions
*
bcs
,
const
database
::
DataContainer
*
const
raw_data
,
YAMLConfigHandle
&&
conf
);
//! \brief Configure the boundary condition
std
::
shared_ptr
<
BoundaryConditions
>
configure_unsaturated_boundary_conditions
(
uindex_t
nb_nodes
,
const
database
::
DataContainer
*
const
raw_data
,
YAMLConfigHandle
&&
configuration
)
{
auto
bcs
=
BoundaryConditions
::
make
(
nb_nodes
,
raw_data
->
nb_component
());
if
(
configuration
.
has_node
(
S_BCS_A_FIXEDNODE
))
{
std
::
vector
<
uindex_t
>
fixed_nodes
=
configuration
.
list_to_vector
<
uindex_t
>
(
S_BCS_A_FIXEDNODE
);
std
::
ostringstream
msg
;
msg
<<
"Fixed nodes : "
;
for
(
auto
node
:
fixed_nodes
)
{
bcs
->
add_fixed_node
(
node
);
msg
<<
node
<<
"; "
;
}
SPC_CONF_LOG
<<
msg
.
str
();
}
if
(
configuration
.
has_node
(
S_BCS_A_GASNODE
))
{
const
std
::
vector
<
uindex_t
>
gas_nodes
=
configuration
.
list_to_vector
<
uindex_t
>
(
S_BCS_A_GASNODE
);
std
::
ostringstream
msg
;
msg
<<
"Gas nodes : "
;
for
(
auto
node:
gas_nodes
)
{
bcs
->
add_gas_node
(
node
);
msg
<<
node
<<
"; "
;
}
SPC_CONF_LOG
<<
msg
.
str
();
}
if
(
configuration
.
has_section
(
S_BCS_SS_CONSTRAINTS
))
{
configure_bcs_constraints
(
bcs
.
get
(),
raw_data
,
configuration
.
get_section
(
S_BCS_SS_CONSTRAINTS
)
);
}
return
bcs
;
}
void
configure_bcs_constraints
(
BoundaryConditions
*
bcs
,
const
database
::
DataContainer
*
const
raw_data
,
YAMLConfigHandle
&&
conf
)
{
// default constraints
if
(
conf
.
has_section
(
S_BCS_SS_CONSTRAINTS_A_DEFAULT
))
{
configure_specmicp_constraints
(
bcs
->
get_constraint
(
"default"
),
raw_data
,
conf
.
get_section
(
S_BCS_SS_CONSTRAINTS_A_DEFAULT
)
);
}
// other constraints
if
(
conf
.
has_section
(
S_BCS_SS_CONSTRAINTS_A_OTHERS
))
{
auto
others
=
conf
.
get_section
(
S_BCS_SS_CONSTRAINTS_A_OTHERS
);
for
(
uindex_t
ind
=
0
;
ind
<
others
.
size
();
++
ind
)
{
auto
subconf
=
others
.
get_section
(
ind
);
const
auto
name
=
subconf
.
get_required_attribute
<
std
::
string
>
(
S_BCS_SS_CONSTRAINTS_A_NAME
);
if
(
subconf
.
has_attribute
(
S_BCS_SS_CONSTRAINTS_A_FORK_FROM
))
{
auto
old_name
=
subconf
.
get_attribute
<
std
::
string
>
(
S_BCS_SS_CONSTRAINTS_A_FORK_FROM
);
if
(
not
bcs
->
has_constraint
(
old_name
))
{
subconf
.
report_error
(
YAMLConfigError
::
InvalidArgument
,
"'"
+
old_name
+
"' is not an "
"existing constraint"
);
}
bcs
->
fork_constraint
(
old_name
,
name
);
}
else
{
bcs
->
add_constraint
(
name
);
}
if
(
subconf
.
has_node
(
S_BCS_SS_CONSTRAINTS_A_NODE
))
{
auto
nodes
=
subconf
.
list_to_vector
<
uindex_t
>
(
S_BCS_SS_CONSTRAINTS_A_NODE
);
for
(
const
auto
&
node:
nodes
)
{
bcs
->
set_constraint
(
node
,
name
);
}
}
configure_specmicp_constraints
(
bcs
->
get_constraint
(
name
),
raw_data
,
std
::
move
(
subconf
));
}
}
}
std
::
shared_ptr
<
EquilibriumOptionsVector
>
configure_unsaturated_equilibrium_options
(
uindex_t
nb_nodes
,
const
units
::
UnitsSet
&
the_units
,
YAMLConfigHandle
&&
configuration
)
{
auto
opts
=
EquilibriumOptionsVector
::
make
(
nb_nodes
);
if
(
configuration
.
has_section
(
S_OPTIONS_SS_DEFAULT
))
{
auto
&
def_opts
=
opts
->
get
(
"default"
);
configure_specmicp_options
(
def_opts
,
the_units
,
configuration
.
get_section
(
S_OPTIONS_SS_DEFAULT
));
SPC_CONF_LOG
<<
"Default SpecMiCP options : "
;
std
::
ostringstream
msg
;
io
::
print_specmicp_options
(
msg
,
def_opts
);
SPC_CONF_LOG
<<
msg
.
str
()
<<
"
\n
"
<<
SPC_CONF_LOG_HLINE
;
}
if
(
configuration
.
has_section
(
S_OPTIONS_SS_OTHERS
))
{
auto
subconf
=
configuration
.
get_section
(
S_OPTIONS_SS_OTHERS
);
const
auto
size
=
subconf
.
size
();
for
(
uindex_t
ind
=
0
;
ind
<
size
;
++
ind
)
{
io
::
YAMLConfigHandle
conf
=
subconf
.
get_section
(
ind
);
const
auto
name
=
conf
.
get_required_attribute
<
std
::
string
>
(
S_OPTIONS_SS_OTHERS_A_NAME
);
if
(
conf
.
has_attribute
(
S_OPTIONS_SS_OTHERS_A_FORK_FROM
))
{
const
auto
fork_from
=
conf
.
get_attribute
<
std
::
string
>
(
S_OPTIONS_SS_OTHERS_A_FORK_FROM
);
if
(
not
opts
->
has_value
(
fork_from
))
{
conf
.
report_error
(
YAMLConfigError
::
InvalidArgument
,
"'"
+
fork_from
+
"' is not an "
"existing set of options.
\n
"
);
}
opts
->
fork
(
fork_from
,
name
);
}
else
{
opts
->
push_back_cache
(
name
,
AdimensionalSystemSolverOptions
());
}
if
(
conf
.
has_node
(
S_OPTIONS_SS_OTHERS_A_NODE
))
{
const
auto
nodes
=
conf
.
list_to_vector
<
uindex_t
>
(
S_OPTIONS_SS_OTHERS_A_NODE
);
for
(
const
auto
&
node:
nodes
)
{
opts
->
set
(
node
,
name
);
}
}
auto
&
new_opts
=
opts
->
get
(
name
);
configure_specmicp_options
(
new_opts
,
the_units
,
std
::
move
(
conf
));
SPC_CONF_LOG
<<
"Extra SpecMiCP options : "
<<
name
;
std
::
ostringstream
msg
;
io
::
print_specmicp_options
(
msg
,
new_opts
);
SPC_CONF_LOG
<<
msg
.
str
()
<<
"
\n
"
<<
SPC_CONF_LOG_HLINE
;
}
}
return
opts
;
}
}
//end namespace io
}
//end namespace specmicp
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