run_mechanical_model_helvetios.sh
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	#!/bin/bash

	#SBATCH --partition debug
	#SBATCH --ntasks 1
	#SBATCH --cpus-per-task 36
	#SBATCH --mem-per-cpu 2G
	#SBATCH --time 00:59:00
	#SBATCH --error=slurm-%j.stderr
	#SBATCH --output=slurm-%j.stdout
	#SBATCH --job-name=mech_model
	#SBATCH --exclusive

	source /home/kubilay/anaconda3/bin/activate
	conda activate muspectre_env2
	export LD_LIBRARY_PATH=/home/kubilay/pnetcdf/lib/:$LD_LIBRARY_PATH

	#module load gcc mvapich2

	echo "* STARTING JOB *"

	LOG_FILE="mechanical_model.log"

	echo "* STARTING JOB *" > $LOG_FILE

	which python3 > $LOG_FILE
	which mpirun >> $LOG_FILE
	which srun >> $LOG_FILE
	ulimit -a >> $LOG_FILE
	START_LAYER=60
	LAYERS=61

	echo $OPENBLAS_NUM_THREAD >> $LOG_FILE
	export OPENBLAS_NUM_THREADS=1
	echo $OPENBLAS_NUM_THREADS >> $LOG_FILE


	for z in $(seq $START_LAYER $LAYERS)
	do
	echo $z
	conda activate muspectre_env2
	#valgrind --leak-check=full -s mpirun -np 16 python3 residual_stress_analysis.py $z 15 >> $LOG_FILE
	mpirun -n 36 python3 residual_stress_analysis.py $z 35 >>$LOG_FILE
	#mpirun -np 5 amplxe-cl -collect hotspots -r /scratch/kubilay/additive-manufacturing-work/mechanical_model/profiling -- python3 residual_stress_analysis.py 60 4 >> $LOG_FILE
	#python3 netcdf2h5.py $z >> $LOG_FILE
	conda deactivate
	done

	conda deactivate

	echo "* JOB FINISHED *"

	echo "* JOB FINISHED *" >> $LOG_FILE