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diff --git a/src/allvars.h b/src/allvars.h
index 6e784b8..40fd6a5 100644
--- a/src/allvars.h
+++ b/src/allvars.h
@@ -1,2436 +1,2438 @@
/*! \file allvars.h
* \brief declares global variables.
*
* This file declares all global variables. Further variables should be added here, and declared as
* 'extern'. The actual existence of these variables is provided by the file 'allvars.c'. To produce
* 'allvars.c' from 'allvars.h', do the following:
*
* - Erase all #define's, typedef's, and enum's
* - add #include "allvars.h", delete the #ifndef ALLVARS_H conditional
* - delete all keywords 'extern'
* - delete all struct definitions enclosed in {...}, e.g.
* "extern struct global_data_all_processes {....} All;"
* becomes "struct global_data_all_processes All;"
*/
#ifndef ALLVARS_H
#define ALLVARS_H
#include <stdio.h>
#include <gsl/gsl_rng.h>
#include <gsl/gsl_errno.h>
#include <gsl/gsl_spline.h>
#include <gsl/gsl_integration.h>
#include "tags.h"
#define GADGETVERSION "2.0" /*!< code version string */
#define TIMEBASE (1<<28) /*!< The simulated timespan is mapped onto the integer interval [0,TIMESPAN],
* where TIMESPAN needs to be a power of 2. Note that (1<<28) corresponds to 2^29
*/
#define MAXTOPNODES 200000 /*!< Maximum number of nodes in the top-level tree used for domain decomposition */
typedef long long peanokey; /*!< defines the variable type used for Peano-Hilbert keys */
#define BITS_PER_DIMENSION 18 /*!< Bits per dimension available for Peano-Hilbert order.
Note: If peanokey is defined as type int, the allowed maximum is 10.
If 64-bit integers are used, the maximum is 21 */
#define PEANOCELLS (((peanokey)1)<<(3*BITS_PER_DIMENSION)) /*!< The number of different Peano-Hilbert cells */
#define RNDTABLE 3000 /*!< gives the length of a table with random numbers, refreshed at every timestep.
This is used to allow application of random numbers to a specific particle
in a way that is independent of the number of processors used. */
#define MAX_REAL_NUMBER 1e37
#define MIN_REAL_NUMBER 1e-37
#define MAXLEN_FILENAME 100 /*!< Maximum number of characters for filenames (including the full path) */
#ifdef ISOTHERM_EQS
#define GAMMA (1.0) /*!< index for isothermal gas */
#else
#define GAMMA (5.0/3) /*!< adiabatic index of simulated gas */
#endif
#define GAMMA_MINUS1 (GAMMA-1)
#define HYDROGEN_MASSFRAC 0.76 /*!< mass fraction of hydrogen, relevant only for radiative cooling */
/* Some physical constants in cgs units */
#define GRAVITY 6.672e-8 /*!< Gravitational constant (in cgs units) */
#define SOLAR_MASS 1.989e33
#define SOLAR_LUM 3.826e33
#define RAD_CONST 7.565e-15
#define AVOGADRO 6.0222e23
#define BOLTZMANN 1.3806e-16
#define GAS_CONST 8.31425e7
#define C 2.9979e10
#define PLANCK 6.6262e-27
#define CM_PER_MPC 3.085678e24
#define PROTONMASS 1.6726e-24
#define ELECTRONMASS 9.10953e-28
#define THOMPSON 6.65245e-25
#define ELECTRONCHARGE 4.8032e-10
#define HUBBLE 3.2407789e-18 /* in h/sec */
#define YEAR_IN_SECOND 31536000.0 /* year in sec */
#define FEH_SOLAR 0.00181 /* used only if cooling with metal is on and chimie is off */
#define KPC_IN_CM 3.085678e+21
#define PI 3.1415926535897931
#define TWOPI 6.2831853071795862
/* Some conversion factors */
#define SEC_PER_MEGAYEAR 3.155e13
#define SEC_PER_YEAR 3.155e7
#ifndef ASMTH
#define ASMTH 1.25 /*!< ASMTH gives the scale of the short-range/long-range force split in units of FFT-mesh cells */
#endif
#ifndef RCUT
#define RCUT 4.5 /*!< RCUT gives the maximum distance (in units of the scale used for the force split) out to
which short-range forces are evaluated in the short-range tree walk. */
#endif
#define MAX_NGB 20000 /*!< defines maximum length of neighbour list */
#define MAXLEN_OUTPUTLIST 10000 /*!< maxmimum number of entries in list of snapshot output times */
#define DRIFT_TABLE_LENGTH 1000 /*!< length of the lookup table used to hold the drift and kick factors */
#ifdef COSMICTIME
#define COSMICTIME_TABLE_LENGTH 1000 /*!< length of the lookup table used for the cosmic time computation */
#endif
#define MAXITER 1000 /*!< maxmimum number of steps for SPH neighbour iteration */
#ifdef DOUBLEPRECISION /*!< If defined, the variable type FLOAT is set to "double", otherwise to FLOAT */
#define FLOAT double
#else
#define FLOAT float
#endif
#ifndef TWODIMS
#define NUMDIMS 3 /*!< For 3D-normalized kernel */
#define KERNEL_COEFF_1 2.546479089470 /*!< Coefficients for SPH spline kernel and its derivative */
#define KERNEL_COEFF_2 15.278874536822
#define KERNEL_COEFF_3 45.836623610466
#define KERNEL_COEFF_4 30.557749073644
#define KERNEL_COEFF_5 5.092958178941
#define KERNEL_COEFF_6 (-15.278874536822)
#define NORM_COEFF 4.188790204786 /*!< Coefficient for kernel normalization. Note: 4.0/3 * PI = 4.188790204786 */
#else
#define NUMDIMS 2 /*!< For 2D-normalized kernel */
#define KERNEL_COEFF_1 (5.0/7*2.546479089470) /*!< Coefficients for SPH spline kernel and its derivative */
#define KERNEL_COEFF_2 (5.0/7*15.278874536822)
#define KERNEL_COEFF_3 (5.0/7*45.836623610466)
#define KERNEL_COEFF_4 (5.0/7*30.557749073644)
#define KERNEL_COEFF_5 (5.0/7*5.092958178941)
#define KERNEL_COEFF_6 (5.0/7*(-15.278874536822))
#define NORM_COEFF M_PI /*!< Coefficient for kernel normalization. */
#endif
#ifdef MULTIPHASE
#define GAS_SPH 0
#define GAS_STICKY 1
#define GAS_DARK 2
#endif
#if defined(SFR) || defined(STELLAR_PROP)
#define ST 1
#endif
#ifdef CHIMIE
#define NELEMENTS 10
#define MAXNELEMENTS 64
#endif
#ifdef COOLING
#define COOLING_NMETALICITIES 9
#define COOLING_NTEMPERATURES 171
#endif
#ifdef COMPUTE_VELOCITY_DISPERSION
#define VELOCITY_DISPERSION_SIZE 3
#endif
#ifdef CHIMIE
extern int FE;
extern int METALS;
#endif
extern int SetMinTimeStepForActives;
extern int ThisTask; /*!< the rank of the local processor */
extern int NTask; /*!< number of processors */
extern int PTask; /*!< smallest integer such that NTask <= 2^PTask */
extern int NumPart; /*!< number of particles on the LOCAL processor */
extern int N_gas; /*!< number of gas particles on the LOCAL processor */
#if defined(SFR) || defined(STELLAR_PROP)
extern int N_stars; /*!< number of stars particle on the LOCAL processor */
#endif
#ifdef MULTIPHASE
extern int N_sph;
extern int N_sticky;
extern int N_stickyflaged;
extern int N_dark;
extern int NumColPotLocal; /*!< local number of potentially collisional particles */
extern int NumColPot; /*!< total number of potentially collisional particles */
extern int NumColLocal; /*!< local number of collisions */
extern int NumCol; /*!< total number of collisions */
extern int NumNoColLocal;
extern int NumNoCol;
#endif
#ifdef GAS_ACCRETION
extern int NumPart_acc;
extern int N_gas_acc;
#ifdef STELLAR_PROP
extern int N_stars_acc;
#endif
#endif
extern long long Ntype[6]; /*!< total number of particles of each type */
extern int NtypeLocal[6]; /*!< local number of particles of each type */
extern int NumForceUpdate; /*!< number of active particles on local processor in current timestep */
extern int NumSphUpdate; /*!< number of active SPH particles on local processor in current timestep */
#ifdef CHIMIE
extern int NumStUpdate;
#endif
#ifdef TESSEL
extern int NumPTUpdate;
#endif
extern double CPUThisRun; /*!< Sums the CPU time for the process (current submission only) */
#ifdef SPLIT_DOMAIN_USING_TIME
extern double CPU_Gravity;
#endif
extern int RestartFlag; /*!< taken from command line used to start code. 0 is normal start-up from
initial conditions, 1 is resuming a run from a set of restart files, while 2
marks a restart from a snapshot file. */
extern char *Exportflag; /*!< Buffer used for flagging whether a particle needs to be exported to another process */
extern int *Ngblist; /*!< Buffer to hold indices of neighbours retrieved by the neighbour search routines */
extern int TreeReconstructFlag; /*!< Signals that a new tree needs to be constructed */
#ifdef SFR
extern int RearrangeParticlesFlag;/*!< Signals that particles must be rearanged */
#endif
extern int Flag_FullStep; /*!< This flag signals that the current step involves all particles */
extern gsl_rng *random_generator; /*!< the employed random number generator of the GSL library */
extern double RndTable[RNDTABLE]; /*!< Hold a table with random numbers, refreshed every timestep */
#ifdef SFR
extern double StarFormationRndTable[RNDTABLE]; /*!< Hold a table with random numbers, refreshed every timestep */
#endif
#ifdef FEEDBACK_WIND
extern double FeedbackWindRndTable[RNDTABLE]; /*!< Hold a table with random numbers, refreshed every timestep */
#endif
#ifdef CHIMIE
extern double ChimieRndTable[RNDTABLE]; /*!< Hold a table with random numbers, refreshed every timestep */
#endif
#ifdef CHIMIE_KINETIC_FEEDBACK
extern double ChimieKineticFeedbackRndTable[RNDTABLE]; /*!< Hold a table with random numbers, refreshed every timestep */
#endif
#ifdef GAS_ACCRETION
extern double gasAccretionRndTable[RNDTABLE]; /*!< Hold a table with random numbers, refreshed every timestep */
#endif
#ifdef AB_TURB
//Ornstein-Uhlenbeck variables
extern double StOUVar;
extern double* StOUPhases;
extern gsl_rng* StRng;
//forcing field in fourie space
extern double* StAmpl;
extern double* StAka; //phases (real part)
extern double* StAkb; //phases (imag part)
extern double* StMode;
extern int StNModes;
//integertime StTPrev; (yr : ask ?)
extern int StTPrev;
extern double StSolWeightNorm;
#endif
#ifdef PY_INTERFACE
extern int NumPartQ;
extern int N_gasQ;
extern long long NtypeQ[6]; /*!< total number of particles of each type */
extern int NtypeLocalQ[6]; /*!< local number of particles of each type */
extern double DomainCornerQ[3]; /*!< gives the lower left corner of simulation volume */
extern double DomainCenterQ[3]; /*!< gives the center of simulation volume */
extern double DomainLenQ; /*!< gives the (maximum) side-length of simulation volume */
extern double DomainFacQ; /*!< factor used for converting particle coordinates to a Peano-Hilbert mesh covering the simulation volume */
extern int DomainMyStartQ; /*!< first domain mesh cell that resides on the local processor */
extern int DomainMyLastQ; /*!< last domain mesh cell that resides on the local processor */
extern int *DomainStartListQ; /*!< a table that lists the first domain mesh cell for all processors */
extern int *DomainEndListQ; /*!< a table that lists the last domain mesh cell for all processors */
extern double *DomainWorkQ; /*!< a table that gives the total "work" due to the particles stored by each processor */
extern int *DomainCountQ; /*!< a table that gives the total number of particles held by each processor */
extern int *DomainCountSphQ; /*!< a table that gives the total number of SPH particles held by each processor */
extern int *DomainTaskQ; /*!< this table gives for each leaf of the top-level tree the processor it was assigned to */
extern peanokey *DomainKeyBufQ; /*!< this points to a buffer used during the exchange of particle data */
extern int NTopnodesQ; /*!< total number of nodes in top-level tree */
extern int NTopleavesQ; /*!< number of leaves in top-level tree. Each leaf can be assigned to a different processor */
extern void *CommBufferQ; /*!< points to communication buffer, which is used in the domain decomposition, the
parallel tree-force computation, the SPH routines, etc. */
#endif
extern double DomainCorner[3]; /*!< gives the lower left corner of simulation volume */
extern double DomainCenter[3]; /*!< gives the center of simulation volume */
extern double DomainLen; /*!< gives the (maximum) side-length of simulation volume */
extern double DomainFac; /*!< factor used for converting particle coordinates to a Peano-Hilbert mesh covering the simulation volume */
extern int DomainMyStart; /*!< first domain mesh cell that resides on the local processor */
extern int DomainMyLast; /*!< last domain mesh cell that resides on the local processor */
extern int *DomainStartList; /*!< a table that lists the first domain mesh cell for all processors */
extern int *DomainEndList; /*!< a table that lists the last domain mesh cell for all processors */
extern double *DomainWork; /*!< a table that gives the total "work" due to the particles stored by each processor */
extern int *DomainCount; /*!< a table that gives the total number of particles held by each processor */
extern int *DomainCountSph; /*!< a table that gives the total number of SPH particles held by each processor */
extern int *DomainTask; /*!< this table gives for each leaf of the top-level tree the processor it was assigned to */
extern int *DomainNodeIndex; /*!< this table gives for each leaf of the top-level tree the corresponding node of the gravitational tree */
extern FLOAT *DomainTreeNodeLen; /*!< this table gives for each leaf of the top-level tree the side-length of the corresponding node of the gravitational tree */
extern FLOAT *DomainHmax; /*!< this table gives for each leaf of the top-level tree the maximum SPH smoothing length among the particles of the corresponding node of the gravitational tree */
extern struct DomainNODE
{
FLOAT s[3]; /*!< center-of-mass coordinates */
FLOAT vs[3]; /*!< center-of-mass velocities */
FLOAT mass; /*!< mass of node */
#ifdef STELLAR_FLUX
FLOAT starlum; /*!< star luminosity of node */
#endif
#ifdef UNEQUALSOFTENINGS
#ifndef ADAPTIVE_GRAVSOFT_FORGAS
int bitflags; /*!< this bit-field encodes the particle type with the largest softening among the particles of the nodes, and whether there are particles with different softening in the node */
#else
FLOAT maxsoft; /*!< hold the maximum gravitational softening of particles in the
node if the ADAPTIVE_GRAVSOFT_FORGAS option is selected */
#endif
#endif
}
*DomainMoment; /*!< this table stores for each node of the top-level tree corresponding node data from the gravitational tree */
extern peanokey *DomainKeyBuf; /*!< this points to a buffer used during the exchange of particle data */
extern peanokey *Key; /*!< a table used for storing Peano-Hilbert keys for particles */
extern peanokey *KeySorted; /*!< holds a sorted table of Peano-Hilbert keys for all particles, used to construct top-level tree */
extern int NTopnodes; /*!< total number of nodes in top-level tree */
extern int NTopleaves; /*!< number of leaves in top-level tree. Each leaf can be assigned to a different processor */
extern struct topnode_data
{
int Daughter; /*!< index of first daughter cell (out of 8) of top-level node */
int Pstart; /*!< for the present top-level node, this gives the index of the first node in the concatenated list of topnodes collected from all processors */
int Blocks; /*!< for the present top-level node, this gives the number of corresponding nodes in the concatenated list of topnodes collected from all processors */
int Leaf; /*!< if the node is a leaf, this gives its number when all leaves are traversed in Peano-Hilbert order */
peanokey Size; /*!< number of Peano-Hilbert mesh-cells represented by top-level node */
peanokey StartKey; /*!< first Peano-Hilbert key in top-level node */
long long Count; /*!< counts the number of particles in this top-level node */
}
#ifdef PY_INTERFACE
*TopNodesQ,
#endif
*TopNodes; /*!< points to the root node of the top-level tree */
extern double TimeOfLastTreeConstruction; /*!< holds what it says, only used in connection with FORCETEST */
/* variables for input/output, usually only used on process 0 */
extern char ParameterFile[MAXLEN_FILENAME]; /*!< file name of parameterfile used for starting the simulation */
extern FILE *FdInfo; /*!< file handle for info.txt log-file. */
extern FILE *FdLog; /*!< file handle for log.txt log-file. */
extern FILE *FdEnergy; /*!< file handle for energy.txt log-file. */
#ifdef SYSTEMSTATISTICS
extern FILE *FdSystem;
#endif
extern FILE *FdTimings; /*!< file handle for timings.txt log-file. */
extern FILE *FdCPU; /*!< file handle for cpu.txt log-file. */
#ifdef FORCETEST
extern FILE *FdForceTest; /*!< file handle for forcetest.txt log-file. */
#endif
#ifdef SFR
extern FILE *FdSfr; /*!< file handle for sfr.txt log-file. */
#endif
#ifdef CHIMIE
extern FILE *FdChimie; /*!< file handle for chimie log-file. */
#ifdef CHIMIE_STATS
extern FILE *FdChimieStatsSNs; /*!< file handle for chimie stats-file. */
extern FILE *FdChimieStatsGas; /*!< file handle for chimie stats-file. */
#endif
#endif
#ifdef MULTIPHASE
extern FILE *FdPhase; /*!< file handle for pase.txt log-file. */
extern FILE *FdSticky; /*!< file handle for sticky.txt log-file. */
#endif
#ifdef AGN_ACCRETION
extern FILE *FdAccretion; /*!< file handle for accretion.txt log-file. */
#endif
#ifdef BONDI_ACCRETION
extern FILE *FdBondi; /*!< file handle for bondi.txt log-file. */
#endif
#ifdef BUBBLES
extern FILE *FdBubble; /*!< file handle for bubble.txt log-file. */
#endif
#ifdef GAS_ACCRETION
extern FILE *FdGasAccretion; /*!< file handle for gas_accretion.txt log-file. */
#endif
extern double DriftTable[DRIFT_TABLE_LENGTH]; /*!< table for the cosmological drift factors */
extern double GravKickTable[DRIFT_TABLE_LENGTH]; /*!< table for the cosmological kick factor for gravitational forces */
extern double HydroKickTable[DRIFT_TABLE_LENGTH]; /*!< table for the cosmological kick factor for hydrodynmical forces */
#ifdef COSMICTIME
extern double CosmicTimeTable[COSMICTIME_TABLE_LENGTH]; /*!< table for the computation of cosmic time */
extern double FullCosmicTimeTable[COSMICTIME_TABLE_LENGTH]; /*!< table for the computation of cosmic time */
extern double FullCosmicTimeTableInv[COSMICTIME_TABLE_LENGTH]; /*!< table for the computation of cosmic time */
#endif
extern void *CommBuffer; /*!< points to communication buffer, which is used in the domain decomposition, the
parallel tree-force computation, the SPH routines, etc. */
/*! This structure contains data which is the SAME for all tasks (mostly code parameters read from the
* parameter file). Holding this data in a structure is convenient for writing/reading the restart file, and
* it allows the introduction of new global variables in a simple way. The only thing to do is to introduce
* them into this structure.
*/
extern struct global_data_all_processes
{
long long TotNumPart; /*!< total particle numbers (global value) */
long long TotN_gas; /*!< total gas particle number (global value) */
#ifdef GAS_ACCRETION
long long TotNumPart_acc;
long long TotN_gas_acc;
#endif
#ifdef PY_INTERFACE
long long TotNumPartQ; /*!< total particle numbers (global value) */
long long TotN_gasQ; /*!< total gas particle number (global value) */
int MaxPartQ; /*!< This gives the maxmimum number of particles that can be stored on one processor. */
int MaxPartSphQ; /*!< This gives the maxmimum number of SPH particles that can be stored on one processor. */
int BunchSizeSph;
int BunchSizeDensitySph;
double ForceSofteningQ;
#endif
#if defined(SFR) || defined(STELLAR_PROP)
long long TotN_stars; /*!< total stars particle number (global value) */
#endif
#ifdef MULTIPHASE
long long TotN_sph; /*!< total sph particle number (global value) */
long long TotN_sticky; /*!< total sticky particle number (global value) */
long long TotN_stickyflaged; /*!< total sticky flaged particle number (global value) */
long long TotN_stickyactive; /*!< total sticky active particle number (global value) */
long long TotN_dark; /*!< total dark particle number (global value) */
#endif
int MaxPart; /*!< This gives the maxmimum number of particles that can be stored on one processor. */
int MaxPartSph; /*!< This gives the maxmimum number of SPH particles that can be stored on one processor. */
#ifdef TESSEL
int MaxgPart;
#endif
#ifdef STELLAR_PROP
int MaxPartStars; /*!< This gives the maxmimum number of Star particles that can be stored on one processor. */
#endif
double BoxSize; /*!< Boxsize in case periodic boundary conditions are used */
int ICFormat; /*!< selects different versions of IC file-format */
int SnapFormat; /*!< selects different versions of snapshot file-formats */
int NumFilesPerSnapshot; /*!< number of files in multi-file snapshot dumps */
int NumFilesWrittenInParallel;/*!< maximum number of files that may be written simultaneously when
writing/reading restart-files, or when writing snapshot files */
int BufferSize; /*!< size of communication buffer in MB */
int BunchSizeForce; /*!< number of particles fitting into the buffer in the parallel tree-force algorithm */
int BunchSizeDensity; /*!< number of particles fitting into the communication buffer in the density computation */
int BunchSizeHydro; /*!< number of particles fitting into the communication buffer in the SPH hydrodynamical force computation */
int BunchSizeDomain; /*!< number of particles fitting into the communication buffer in the domain decomposition */
#ifdef MULTIPHASE
int BunchSizeSticky; /*!< number of particles fitting into the communication buffer in the Chimie computation */
#endif
#ifdef CHIMIE
int BunchSizeChimie; /*!< number of particles fitting into the communication buffer in the Chimie computation */
int BunchSizeStarsDensity; /*!< number of particles fitting into the communication buffer in the star density computation */
#endif
#ifdef SYNCHRONIZE_NGB_TIMESTEP
int BunchSizeSynchronizeNgBTimestep;
#endif
#ifdef DISSIPATION_FORCES
int BunchSizeDissipationForces;
#endif
#ifdef FOF
int BunchSizeFOF;
#endif
#ifdef TESSEL
int BunchSizeGhost;
#endif
double PartAllocFactor; /*!< in order to maintain work-load balance, the particle load will usually
NOT be balanced. Each processor allocates memory for PartAllocFactor times
the average number of particles to allow for that */
double TreeAllocFactor; /*!< Each processor allocates a number of nodes which is TreeAllocFactor times
the maximum(!) number of particles. Note: A typical local tree for N
particles needs usually about ~0.65*N nodes. */
#ifdef SFR
double StarsAllocFactor; /*!< Estimated fraction of gas particles that will form stars during the simulation
This allow to reduce the memory stored for stellar particles */
#endif
/* some SPH parameters */
double DesNumNgb; /*!< Desired number of SPH neighbours */
double MaxNumNgbDeviation; /*!< Maximum allowed deviation neighbour number */
double ArtBulkViscConst; /*!< Sets the parameter \f$\alpha\f$ of the artificial viscosity */
#ifdef ART_CONDUCTIVITY
double ArtCondConst; /*!< Sets the parameter \f$\alpha\f$ of the artificial conductivity */
double ArtCondThreshold;
#endif
double InitGasTemp; /*!< may be used to set the temperature in the IC's */
double MinGasTemp; /*!< may be used to set a floor for the gas temperature */
double MinEgySpec; /*!< the minimum allowed temperature expressed as energy per unit mass */
/* Usefull constants */
double Boltzmann;
double ProtonMass;
double mumh;
#ifdef COOLING
/* Cooling parameters */
double *logT;
double *logL;
gsl_interp_accel *acc_cooling_spline;
gsl_spline *cooling_spline;
double CoolingType;
#ifdef PYCOOL
char * CoolingFile;
#else
char CoolingFile[MAXLEN_FILENAME]; /*!< cooling file */
#endif
double CutofCoolingTemperature;
/*
new metal dependent cooling
*/
double CoolingParameters_zmin;
double CoolingParameters_zmax;
double CoolingParameters_slz;
double CoolingParameters_tmin;
double CoolingParameters_tmax;
double CoolingParameters_slt;
double CoolingParameters_FeHSolar;
double CoolingParameters_ZHSolar;
double CoolingParameters_cooling_data_max;
double CoolingParameters_cooling_data[COOLING_NMETALICITIES][COOLING_NTEMPERATURES];
int CoolingParameters_p;
int CoolingParameters_q;
#ifdef COOLING_WIERSMA
char CoolingDirectory[MAXLEN_FILENAME]; /*!< cooling directory */
#endif
#ifdef COOLING_GRACKLE
char GrackleCloudyTable[MAXLEN_FILENAME]; /*!< cooling cloudy table */
int GrackleUVbackground;
double GrackleRedshift;
#endif
#ifdef COOLING_FCT_FROM_HDF5
// cooling tables loaded from HDF5 files
// (dimensions depend on the presence of nHe)
float*** COOLING_TABLES_METAL_FREE;
float** COOLING_TABLES_TOTAL_METAL;
float*** ELECTRON_DENSITY_OVER_N_H_TABLES;
float** ELECTRON_DENSITY_OVER_N_H_TABLES_SOLAR;
float* HYDROGEN_TABLES;
float* TEMPERATURE_TABLES;
float* HELIUM_ABOUNDANCE_TABLES;
//corresponding sizes
int SIZE_HYDROGEN_TABLES;
int SIZE_TEMPERATURE_TABLES;
int SIZE_HELIUM_ABOUNDANCE_TABLES;
// current redshift value determining the cooling file
// from which the data is interpolated
float CURRENT_TABLE_REDSHIFT;
#endif
#endif
#ifdef CHIMIE
int ChimieNumberOfParameterFiles;
#ifdef PYCHEM
char * ChimieParameterFile;
#else
char ChimieParameterFile[MAXLEN_FILENAME]; /*!< chimie parameter file */
#endif
double ChimieSupernovaEnergy;
double ChimieKineticFeedbackFraction;
double ChimieWindSpeed;
double ChimieWindTime;
double ChimieSNIaThermalTime;
double ChimieSNIIThermalTime;
double ChimieMaxSizeTimestep;
#ifdef CHIMIE_ONE_SN_ONLY /*!< explode only one sn>*/
int ChimieOneSN;
double ChimieOneSNMass;
#endif
#if CHIMIE_EJECTA_RADIUS == 1
double ChimieEjectaRadius;
#endif
#endif
#if defined (CHIMIE) || defined (COOLING)
double InitGasMetallicity; /*!< initial gas metallicity>*/
double GasMetal; /*!< gas metal fraction, used when CHIMIE is disabled >*/
#endif
#if !defined (HEATING_PE)
double HeatingPeElectronFraction;
#endif
#if !defined (HEATING_PE) || defined (STELLAR_FLUX) || defined (EXTERNAL_FLUX)
double HeatingPeSolarEnergyDensity;
#endif
#if !defined (HEATING_PE) || defined (STELLAR_FLUX)
double HeatingPeLMRatioGas;
double HeatingPeLMRatioHalo;
double HeatingPeLMRatioDisk;
double HeatingPeLMRatioBulge;
double HeatingPeLMRatioStars;
double HeatingPeLMRatioBndry;
double HeatingPeLMRatio[6];
#endif
#ifdef EXTERNAL_FLUX
double HeatingExternalFLuxEnergyDensity;
#endif
#ifdef MULTIPHASE
double CriticalTemperature;
double CriticalEgySpec;
double CriticalNonCollisionalTemperature;
double CriticalNonCollisionalEgySpec;
#ifdef COLDGAS_CYCLE
double ColdGasCycleTransitionTime;
double ColdGasCycleTransitionParameter;
#endif
#endif
#ifdef MULTIPHASE
/* some STICKY parameters */
int StickyUseGridForCollisions;
double StickyTime; /*!< Cooling time of sticky particle collision */
double StickyCollisionTime;
double StickyLastCollisionTime;
double StickyIdleTime;
double StickyMinVelocity;
double StickyMaxVelocity;
int StickyGridNx;
int StickyGridNy;
int StickyGridNz;
double StickyGridXmin;
double StickyGridXmax;
double StickyGridYmin;
double StickyGridYmax;
double StickyGridZmin;
double StickyGridZmax;
double StickyLambda;
double StickyDensity;
double StickyDensityPower;
double StickyBetaR;
double StickyBetaT;
double StickyRsphFact; /*!< Fraction of the sph radius used in sticky particle */
#endif
#ifdef OUTERPOTENTIAL
#ifdef NFW
double HaloConcentration;
double HaloMass;
double GasMassFraction;
double NFWPotentialCte;
double Rs;
#endif
#ifdef PLUMMER
double PlummerMass;
double PlummerSoftenning;
double PlummerPotentialCte;
#endif
#ifdef MIYAMOTONAGAI
double MiyamotoNagaiMass;
double MiyamotoNagaiHr;
double MiyamotoNagaiHz;
double MiyamotoNagaiPotentialCte;
#endif
#ifdef PISOTHERM
double Rho0;
double Rc;
double PisothermPotentialCte;
double GasMassFraction;
double PotentialInf;
gsl_function PotentialF;
gsl_integration_workspace *Potentialw;
#endif
#ifdef CORIOLIS
double CoriolisOmegaX;
double CoriolisOmegaY;
double CoriolisOmegaZ;
double CoriolisOmegaX0;
double CoriolisOmegaY0;
double CoriolisOmegaZ0;
#endif
#endif
#ifdef SFR
int StarFormationNStarsFromGas;
double StarFormationStarMass;
double StarFormationMgMsFraction;
int StarFormationType;
double StarFormationCstar;
double StarFormationTime;
double StarFormationDensity;
double StarFormationTemperature;
double ThresholdDensity;
#ifndef LONGIDS
unsigned int MaxID; /* max value of ID, this is used to set id of new stars */
#else
unsigned long long MaxID; /* max value of ID, this is used to set id of new stars */
#endif
#endif
#ifdef FOF
double FoF_ThresholdDensity; /* threshold density : particles with density below FoF_ThresholdDensity are excluded from the FoF */
double FoF_MinHeadDensity; /* keep only heads with density higher than this value */
double FoF_Density;
double FoF_ThresholdDensityFactor;
double FoF_MinHeadDensityFactor;
int FoF_MinGroupMembers; /* minimum members required to form stars */
double FoF_MinGroupMass; /* minimum mass required to form stars (in solar mass) */
double FoF_HsmlSearchRadiusFactor; /* friends are search in a radius given by hsml time this factor */
double FoF_HsmlMaxDistFactor; /* a particle may be linked to a head only if ``r < Hsml*FoF_HsmlMaxDistFactor``*/
+
+ int FoF_StarFormationType; /*!< allow to tune the sfr in FOF */
double FoF_TimeBetFoF; /*!< simulation time interval between computations of FoF */
double FoF_TimeLastFoF; /*!< simulation time when the FoF was computed the last time */
int FoF_SnapshotFileCount; /*!< number of snapshot that is written next */
char FoF_SnapshotFileBase[MAXLEN_FILENAME]; /*!< basename to construct the names of snapshotf files */
#endif
#ifdef FEEDBACK
double SupernovaTime;
#endif
#ifdef FEEDBACK_WIND
double SupernovaWindEgySpecPerMassUnit;
double SupernovaWindFractionInEgyKin;
double SupernovaWindParameter;
double SupernovaWindSpeed;
double SupernovaWindIntAccuracy;
#endif
#ifdef AGN_ACCRETION
double TimeBetAccretion;
double AccretionRadius;
double AGNFactor;
double MinMTotInRa;
double TimeLastAccretion;
double LastMTotInRa;
double MTotInRa;
double dMTotInRa;
#endif
#ifdef BUBBLES
char BubblesInitFile[MAXLEN_FILENAME]; /*!< bubble file */
double *BubblesTime;
double *BubblesD;
double *BubblesR;
double *BubblesE;
double *BubblesA;
double *BubblesB;
int BubblesIndex;
double BubblesAlpha;
double BubblesBeta;
double BubblesDelta;
double BubblesRadiusFactor;
double EnergyBubbles;
#endif
#ifdef AGN_HEATING
double AGNHeatingPower;
double AGNHeatingRmax;
#endif
#ifdef BONDI_ACCRETION
double BondiEfficiency;
double BondiBlackHoleMass;
double BondiHsmlFactor;
double BondiPower;
double BondiTimeBet;
double BondiTimeLast;
#endif
#if defined (AGN_ACCRETION) || defined (BONDI_ACCRETION)
double LightSpeed;
#endif
#if defined(ART_VISCO_MM)|| defined(ART_VISCO_RO) || defined(ART_VISCO_CD)
double ArtBulkViscConstMin;
double ArtBulkViscConstMax;
double ArtBulkViscConstL;
#endif
#ifdef METAL_DIFFUSION
double MetalDiffusionConst;
#endif
#ifdef AB_TURB
double StDecay;
double StEnergy;
double StDtFreq;
double StKmin;
double StKmax;
double StSolWeight;
double StAmplFac;
int StSpectForm;
int StSeed;
#endif
#ifdef GAS_ACCRETION
double AccretionParticleMass[6];
#endif
#ifdef SYNCHRONIZE_NGB_TIMESTEP
int NgbFactorTimestep;
#endif
/* some force counters */
long long TotNumOfForces; /*!< counts total number of force computations */
long long NumForcesSinceLastDomainDecomp; /*!< count particle updates since last domain decomposition */
/* system of units */
double G; /*!< Gravity-constant in internal units */
double UnitTime_in_s; /*!< factor to convert internal time unit to seconds/h */
double UnitMass_in_g; /*!< factor to convert internal mass unit to grams/h */
double UnitVelocity_in_cm_per_s; /*!< factor to convert intqernal velocity unit to cm/sec */
double UnitLength_in_cm; /*!< factor to convert internal length unit to cm/h */
double UnitPressure_in_cgs; /*!< factor to convert internal pressure unit to cgs units (little 'h' still around!) */
double UnitDensity_in_cgs; /*!< factor to convert internal length unit to g/cm^3*h^2 */
double UnitCoolingRate_in_cgs; /*!< factor to convert internal cooling rate to cgs units */
double UnitEnergy_in_cgs; /*!< factor to convert internal energy to cgs units */
double UnitTime_in_Megayears; /*!< factor to convert internal time to megayears/h */
double GravityConstantInternal; /*!< If set to zero in the parameterfile, the internal value of the
gravitational constant is set to the Newtonian value based on the system of
units specified. Otherwise the value provided is taken as internal gravity constant G. */
/* Cosmological parameters */
double Hubble; /*!< Hubble-constant in internal units */
double Omega0; /*!< matter density in units of the critical density (at z=0)*/
double OmegaLambda; /*!< vaccum energy density relative to crictical density (at z=0) */
double OmegaBaryon; /*!< baryon density in units of the critical density (at z=0)*/
double HubbleParam; /*!< little `h', i.e. Hubble constant in units of 100 km/s/Mpc. Only needed to get absolute physical values for cooling physics */
/* Code options */
int ComovingIntegrationOn; /*!< flags that comoving integration is enabled */
int PeriodicBoundariesOn; /*!< flags that periodic boundaries are enabled */
int ResubmitOn; /*!< flags that automatic resubmission of job to queue system is enabled */
int TypeOfOpeningCriterion; /*!< determines tree cell-opening criterion: 0 for Barnes-Hut, 1 for relative criterion */
int TypeOfTimestepCriterion; /*!< gives type of timestep criterion (only 0 supported right now - unlike gadget-1.1) */
int OutputListOn; /*!< flags that output times are listed in a specified file */
/* Parameters determining output frequency */
int SnapshotFileCount; /*!< number of snapshot that is written next */
double TimeBetSnapshot; /*!< simulation time interval between snapshot files */
double TimeOfFirstSnapshot; /*!< simulation time of first snapshot files */
double CpuTimeBetRestartFile; /*!< cpu-time between regularly generated restart files */
double TimeLastRestartFile; /*!< cpu-time when last restart-file was written */
double TimeBetStatistics; /*!< simulation time interval between computations of energy statistics */
double TimeLastStatistics; /*!< simulation time when the energy statistics was computed the last time */
int NumCurrentTiStep; /*!< counts the number of system steps taken up to this point */
/* Current time of the simulation, global step, and end of simulation */
double Time; /*!< current time of the simulation */
double TimeBegin; /*!< time of initial conditions of the simulation */
double TimeStep; /*!< difference between current times of previous and current timestep */
double TimeMax; /*!< marks the point of time until the simulation is to be evolved */
/* variables for organizing discrete timeline */
double Timebase_interval; /*!< factor to convert from floating point time interval to integer timeline */
int Ti_Current; /*!< current time on integer timeline */
int Ti_nextoutput; /*!< next output time on integer timeline */
#ifdef FLEXSTEPS
int PresentMinStep; /*!< If FLEXSTEPS is used, particle timesteps are chosen as multiples of the present minimum timestep. */
int PresentMaxStep; /*!< If FLEXSTEPS is used, this is the maximum timestep in timeline units, rounded down to the next power 2 division */
#endif
#ifdef PMGRID
int PM_Ti_endstep; /*!< begin of present long-range timestep */
int PM_Ti_begstep; /*!< end of present long-range timestep */
#endif
/* Placement of PM grids */
#ifdef PMGRID
double Asmth[2]; /*!< Gives the scale of the long-range/short-range split (in mesh-cells), both for the coarse and the high-res mesh */
double Rcut[2]; /*!< Gives the maximum radius for which the short-range force is evaluated with the tree (in mesh-cells), both for the coarse and the high-res mesh */
double Corner[2][3]; /*!< lower left corner of coarse and high-res PM-mesh */
double UpperCorner[2][3]; /*!< upper right corner of coarse and high-res PM-mesh */
double Xmintot[2][3]; /*!< minimum particle coordinates both for coarse and high-res PM-mesh */
double Xmaxtot[2][3]; /*!< maximum particle coordinates both for coarse and high-res PM-mesh */
double TotalMeshSize[2]; /*!< total extension of coarse and high-res PM-mesh */
#endif
/* Variables that keep track of cumulative CPU consumption */
double TimeLimitCPU; /*!< CPU time limit as defined in parameterfile */
double CPU_TreeConstruction; /*!< time spent for constructing the gravitational tree */
double CPU_TreeWalk; /*!< actual time spent for pure tree-walks */
double CPU_Gravity; /*!< cumulative time used for gravity computation (tree-algorithm only) */
double CPU_Potential; /*!< time used for computing gravitational potentials */
double CPU_Domain; /*!< cumulative time spent for domain decomposition */
double CPU_Snapshot; /*!< time used for writing snapshot files */
double CPU_Total; /*!< cumulative time spent for domain decomposition */
double CPU_CommSum; /*!< accumulated time used for communication, and for collecting partial results, in tree-gravity */
double CPU_Imbalance; /*!< cumulative time lost accross all processors as work-load imbalance in gravitational tree */
double CPU_HydCompWalk; /*!< time used for actual SPH computations, including neighbour search */
double CPU_HydCommSumm; /*!< cumulative time used for communication in SPH, and for collecting partial results */
double CPU_HydImbalance; /*!< cumulative time lost due to work-load imbalance in SPH */
double CPU_Hydro; /*!< cumulative time spent for SPH related computations */
#ifdef SFR
double CPU_StarFormation; /*!< cumulative time spent for star formation computations */
#endif
#ifdef CHIMIE
double CPU_Chimie; /*!< cumulative time spent for chimie computations */
double CPU_ChimieDensCompWalk;
double CPU_ChimieDensCommSumm;
double CPU_ChimieDensImbalance;
double CPU_ChimieDensEnsureNgb;
double CPU_ChimieCompWalk;
double CPU_ChimieCommSumm;
double CPU_ChimieImbalance;
#endif
#ifdef MULTIPHASE
double CPU_Sticky; /*!< cumulative time spent for sticky computations */
#endif
double CPU_EnsureNgb; /*!< time needed to iterate on correct neighbour numbers */
double CPU_Predict; /*!< cumulative time to drift the system forward in time, including dynamic tree updates */
double CPU_TimeLine; /*!< time used for determining new timesteps, and for organizing the timestepping, including kicks of active particles */
double CPU_PM; /*!< time used for long-range gravitational force */
double CPU_Peano; /*!< time required to establish Peano-Hilbert order */
#ifdef DETAILED_CPU_DOMAIN
double CPU_Domain_findExtend;
double CPU_Domain_determineTopTree;
double CPU_Domain_sumCost;
double CPU_Domain_findSplit;
double CPU_Domain_shiftSplit;
double CPU_Domain_countToGo;
double CPU_Domain_exchange;
#endif
#ifdef DETAILED_CPU_GRAVITY
double CPU_Gravity_TreeWalk1;
double CPU_Gravity_TreeWalk2;
double CPU_Gravity_CommSum1;
double CPU_Gravity_CommSum2;
double CPU_Gravity_Imbalance1;
double CPU_Gravity_Imbalance2;
#endif
#ifdef COOLING
double CPU_Cooling;
#endif
#ifdef DETAILED_CPU
double CPU_Leapfrog;
double CPU_Physics;
double CPU_Residual;
double CPU_Accel;
double CPU_Begrun;
#endif
/* tree code opening criterion */
double ErrTolTheta; /*!< BH tree opening angle */
double ErrTolForceAcc; /*!< parameter for relative opening criterion in tree walk */
/* adjusts accuracy of time-integration */
double ErrTolIntAccuracy; /*!< accuracy tolerance parameter \f$ \eta \f$ for timestep criterion. The
timestep is \f$ \Delta t = \sqrt{\frac{2 \eta eps}{a}} \f$ */
double MinSizeTimestep; /*!< minimum allowed timestep. Normally, the simulation terminates if the
timestep determined by the timestep criteria falls below this limit. */
double MaxSizeTimestep; /*!< maximum allowed timestep */
double MaxRMSDisplacementFac; /*!< this determines a global timestep criterion for cosmological simulations
in comoving coordinates. To this end, the code computes the rms velocity
of all particles, and limits the timestep such that the rms displacement
is a fraction of the mean particle separation (determined from the
particle mass and the cosmological parameters). This parameter specifies
this fraction. */
double CourantFac; /*!< SPH-Courant factor */
/* frequency of tree reconstruction/domain decomposition */
double TreeDomainUpdateFrequency; /*!< controls frequency of domain decompositions */
/* Gravitational and hydrodynamical softening lengths (given in terms of an `equivalent' Plummer softening length).
* Five groups of particles are supported 0="gas", 1="halo", 2="disk", 3="bulge", 4="stars", 5="bndry"
*/
double MinGasHsmlFractional; /*!< minimum allowed SPH smoothing length in units of SPH gravitational softening length */
double MinGasHsml; /*!< minimum allowed SPH smoothing length */
double SofteningGas; /*!< comoving gravitational softening lengths for type 0 */
double SofteningHalo; /*!< comoving gravitational softening lengths for type 1 */
double SofteningDisk; /*!< comoving gravitational softening lengths for type 2 */
double SofteningBulge; /*!< comoving gravitational softening lengths for type 3 */
double SofteningStars; /*!< comoving gravitational softening lengths for type 4 */
double SofteningBndry; /*!< comoving gravitational softening lengths for type 5 */
double SofteningGasMaxPhys; /*!< maximum physical softening length for type 0 */
double SofteningHaloMaxPhys; /*!< maximum physical softening length for type 1 */
double SofteningDiskMaxPhys; /*!< maximum physical softening length for type 2 */
double SofteningBulgeMaxPhys; /*!< maximum physical softening length for type 3 */
double SofteningStarsMaxPhys; /*!< maximum physical softening length for type 4 */
double SofteningBndryMaxPhys; /*!< maximum physical softening length for type 5 */
double SofteningTable[6]; /*!< current (comoving) gravitational softening lengths for each particle type */
double ForceSoftening[6]; /*!< the same, but multiplied by a factor 2.8 - at that scale the force is Newtonian */
double MassTable[6]; /*!< Table with particle masses for particle types with equal mass.
If particle masses are all equal for one type, the corresponding entry in MassTable
is set to this value, allowing the size of the snapshot files to be reduced. */
/* some filenames */
char InitCondFile[MAXLEN_FILENAME]; /*!< filename of initial conditions */
char OutputDir[MAXLEN_FILENAME]; /*!< output directory of the code */
char SnapshotFileBase[MAXLEN_FILENAME]; /*!< basename to construct the names of snapshotf files */
char EnergyFile[MAXLEN_FILENAME]; /*!< name of file with energy statistics */
#ifdef SYSTEMSTATISTICS
char SystemFile[MAXLEN_FILENAME];
#endif
char CpuFile[MAXLEN_FILENAME]; /*!< name of file with cpu-time statistics */
char InfoFile[MAXLEN_FILENAME]; /*!< name of log-file with a list of the timesteps taken */
char LogFile[MAXLEN_FILENAME]; /*!< name of log-file with varied info */
#ifdef SFR
char SfrFile[MAXLEN_FILENAME]; /*!< name of file with sfr records */
#endif
#ifdef CHIMIE
char ChimieFile[MAXLEN_FILENAME]; /*!< name of file with chimie records */
#endif
#ifdef MULTIPHASE
char PhaseFile[MAXLEN_FILENAME]; /*!< name of file with phase records */
char StickyFile[MAXLEN_FILENAME]; /*!< name of file with sticky records */
#endif
#ifdef AGN_ACCRETION
char AccretionFile[MAXLEN_FILENAME]; /*!< name of file with accretion records */
#endif
#ifdef BONDI_ACCRETION
char BondiFile[MAXLEN_FILENAME]; /*!< name of file with bondi records */
#endif
#ifdef BUBBLES
char BubbleFile[MAXLEN_FILENAME]; /*!< name of file with bubble records */
#endif
#ifdef GAS_ACCRETION
char GasAccretionFile[MAXLEN_FILENAME]; /*!< name of file with sfr records */
#endif
char TimingsFile[MAXLEN_FILENAME]; /*!< name of file with performance metrics of gravitational tree algorithm */
char RestartFile[MAXLEN_FILENAME]; /*!< basename of restart-files */
char ResubmitCommand[MAXLEN_FILENAME]; /*!< name of script-file that will be executed for automatic restart */
char OutputListFilename[MAXLEN_FILENAME]; /*!< name of file with list of desired output times */
double OutputListTimes[MAXLEN_OUTPUTLIST]; /*!< table with desired output times */
int OutputListLength; /*!< number of output times stored in the table of desired output times */
#ifdef RANDOMSEED_AS_PARAMETER
int RandomSeed; /*!< initial random seed >*/
#endif
#if defined(CHIMIE) || defined(FOF)
double CMUtoMsol; /*!< convertion factor from Code Mass Unit to Solar Mass >*/
double MsoltoCMU; /*!< convertion factor from Solar Mass to Code Mass Unit >*/
#endif
}
All; /*!< a container variable for global variables that are equal on all processors */
/*! This structure holds all the information that is
* stored for each particle of the simulation.
*/
extern struct particle_data
{
FLOAT Pos[3]; /*!< particle position at its current time */
FLOAT Mass; /*!< particle mass */
FLOAT Vel[3]; /*!< particle velocity at its current time */
FLOAT GravAccel[3]; /*!< particle acceleration due to gravity */
#ifdef PMGRID
FLOAT GravPM[3]; /*!< particle acceleration due to long-range PM gravity force*/
#endif
#ifdef FORCETEST
FLOAT GravAccelDirect[3]; /*!< particle acceleration when computed with direct summation */
#endif
FLOAT Potential; /*!< gravitational potential */
FLOAT OldAcc; /*!< magnitude of old gravitational force. Used in relative opening criterion */
#ifndef LONGIDS
unsigned int ID; /*!< particle identifier */
#else
unsigned long long ID; /*!< particle identifier */
#endif
int Type; /*!< flags particle type. 0=gas, 1=halo, 2=disk, 3=bulge, 4=stars, 5=bndry */
int Ti_endstep; /*!< marks start of current timestep of particle on integer timeline */
int Ti_begstep; /*!< marks end of current timestep of particle on integer timeline */
#ifdef SYNCHRONIZE_NGB_TIMESTEP
int Old_Ti_endstep; /*!< marks start of old current timestep of particle on integer timeline */
int Old_Ti_begstep; /*!< marks end of old current timestep of particle on integer timeline */
#endif
#ifdef FLEXSTEPS
int FlexStepGrp; /*!< a random 'offset' on the timeline to create a smooth groouping of particles */
#endif
float GravCost; /*!< weight factor used for balancing the work-load */
#ifdef PSEUDOSYMMETRIC
float AphysOld; /*!< magnitude of acceleration in last timestep. Used to make a first order
prediction of the change of acceleration expected in the future, thereby
allowing to guess whether a decrease/increase of the timestep should occur
in the timestep that is started. */
#endif
#ifdef PARTICLE_FLAG
float Flag;
#endif
#ifdef STELLAR_PROP
unsigned int StPIdx; /*!< index to the corresponding StP particle */
#endif
#ifdef TESSEL
int iT; /*!< index of a triangle to which the point belong to */
int IsDone;
int IsAdded; /*!< if the point has already be added in the tesselation */
int ivPoint; /*!< index of first voronoi point */
int nvPoints; /*!< number of voronoi points */
int iMedian;
int nMedians;
double Volume;
double Density;
double Pressure;
double Entropy;
double rSearch; /*!< radius in which particles must search for ngbs */
int iPref; /*!< for a ghost point, index of the reference point */
FLOAT tesselAccel[3];
#endif
# ifdef SYNCHRONIZE_NGB_TIMESTEP
int Ti_step;
#endif
#ifdef VANISHING_PARTICLES
int VanishingFlag;
#endif
#ifdef FOF_SFR
//int FoFidx; /* no longer used */
#endif
}
*P, /*!< holds particle data on local processor */
#ifdef PY_INTERFACE
*Q,
*DomainPartBufQ, /*!< buffer for particle data used in domain decomposition */
#endif
*DomainPartBuf; /*!< buffer for particle data used in domain decomposition */
/* the following struture holds data that is stored for each SPH particle in addition to the collisionless
* variables.
*/
extern struct sph_particle_data
{
FLOAT Entropy; /*!< current value of entropy (actually entropic function) of particle */
FLOAT Density; /*!< current baryonic mass density of particle */
FLOAT Hsml; /*!< current smoothing length */
FLOAT Left; /*!< lower bound in iterative smoothing length search */
FLOAT Right; /*!< upper bound in iterative smoothing length search */
FLOAT NumNgb; /*!< weighted number of neighbours found */
#ifdef AVOIDNUMNGBPROBLEM
FLOAT OldNumNgb;
#endif
FLOAT Pressure; /*!< current pressure */
FLOAT DtEntropy; /*!< rate of change of entropy */
#ifdef COOLING
//FLOAT EntropyRad; /*!< current value of entropy resulting from the cooling */
FLOAT DtEntropyRad; /*!< rate of change of entropy due to cooling */
FLOAT DtEnergyRad;
#endif
#ifdef STELLAR_FLUX
FLOAT EnergyFlux; /*!< current value of local energy flux - Sph particles */
#endif
#ifdef AGN_HEATING
FLOAT EgySpecAGNHeat; /*!< current value of specific energy radiated of particle - Sph particles */
FLOAT DtEgySpecAGNHeat; /*!< rate of change of specific radiated energy - Sph particles */
FLOAT DtEntropyAGNHeat;
#endif
#ifdef MULTIPHASE
FLOAT StickyTime;
int StickyFlag;
#ifdef COUNT_COLLISIONS
float StickyCollisionNumber;
#endif
#endif
#ifdef FEEDBACK
FLOAT EgySpecFeedback;
FLOAT DtEgySpecFeedback;
FLOAT EnergySN;
FLOAT EnergySNrem;
FLOAT TimeSN;
FLOAT FeedbackVel[3]; /*!< kick due to feedback force */
#endif
#ifdef FEEDBACK_WIND
FLOAT FeedbackWindVel[3]; /*!< kick due to feedback force */
#endif
FLOAT HydroAccel[3]; /*!< acceleration due to hydrodynamical force */
FLOAT VelPred[3]; /*!< predicted SPH particle velocity at the current time */
FLOAT DivVel; /*!< local velocity divergence */
FLOAT CurlVel; /*!< local velocity curl */
FLOAT Rot[3]; /*!< local velocity curl */
FLOAT DhsmlDensityFactor; /*!< correction factor needed in the equation of motion of the conservative entropy formulation of SPH */
FLOAT MaxSignalVel; /*!< maximum "signal velocity" occuring for this particle */
#ifdef MULTIPHASE
int Phase;
int StickyIndex;
int StickyNgb;
int StickyMaxID;
float StickyMaxFs;
FLOAT StickyNewVel[3];
#endif
#ifdef OUTPUTOPTVAR1
FLOAT OptVar1; /*!< optional variable 1 */
#endif
#ifdef OUTPUTOPTVAR2
FLOAT OptVar2; /*!< optional variable 2 */
#endif
#ifdef COMPUTE_VELOCITY_DISPERSION
FLOAT VelocityDispersion[VELOCITY_DISPERSION_SIZE]; /*!< velocity dispersion */
#endif
#ifdef CHIMIE
FLOAT Metal[NELEMENTS];
#ifdef CHIMIE_SMOOTH_METALS
FLOAT MassMetal[NELEMENTS]; /*!< old metal estimation (ratio of masses) */
FLOAT RhoMetal[NELEMENTS]; /*!< metal density of the particle */
#endif
FLOAT dMass; /*!< mass variation due to mass transfere */
#ifdef CHIMIE_THERMAL_FEEDBACK
FLOAT DeltaEgySpec;
FLOAT SNIaThermalTime; /*!< flag particles that got energy from SNIa */
FLOAT SNIIThermalTime; /*!< flag particles that got energy from SNII */
double NumberOfSNIa;
double NumberOfSNII;
#endif
#ifdef CHIMIE_KINETIC_FEEDBACK
FLOAT WindTime; /*!< flag particles that belongs to the wind */
unsigned int WindFlag; /*!< flag particles that will be part of the wind */
#endif
#endif /*CHIMIE*/
#ifdef ENTROPYPRED
FLOAT EntropyPred; /*!< predicted entropy at the current time */
#endif
#ifdef ART_CONDUCTIVITY
FLOAT EnergyIntPred;
FLOAT GradEnergyInt[3];
#endif
#ifdef AB_TURB
FLOAT TurbAccel[3];
#endif
#if defined(ART_VISCO_MM)|| defined(ART_VISCO_RO) || defined(ART_VISCO_CD)
double ArtBulkViscConst;
#ifdef ART_VISCO_CD
double DmatCD[3][3];
double TmatCD[3][3];
double DiVelAccurate;
double DiVelTemp;
double ArtBulkViscConstOld;
double R_CD;
FLOAT MaxSignalVelCD;
#endif
#endif
#ifdef GAS_ACCRETION
int ActiveFlag;
#endif
#ifdef DISSIPATION_FORCES
FLOAT EnergyDissipationForces;
FLOAT DtEnergyDissipationForces;
FLOAT DissipationForcesAccel[3];
#endif
#if PY_INTERFACE
FLOAT Observable;
FLOAT ObsMoment0;
FLOAT ObsMoment1;
FLOAT GradObservable[3];
#endif
# ifdef SYNCHRONIZE_NGB_TIMESTEP
int Ti_minNgbStep;
#endif
#if defined(TIMESTEP_UPDATE_FOR_FEEDBACK) && defined(CHIMIE_THERMAL_FEEDBACK)
FLOAT FeedbackUpdatedAccel[3]; /*!< acceleration after feedback injection */
FLOAT MaxSignalVelFeedbackUpdated;
#endif
#ifdef DENSITY_INDEPENDENT_SPH
FLOAT EgyWtDensity; /*!< 'effective' rho to use in hydro equations */
FLOAT EntVarPred; /*!< predicted entropy variable */
FLOAT DhsmlEgyDensityFactor; /*!< correction factor for density-independent entropy formulation */
#endif
#ifdef FOF
int FOF_CPUHead; /*!< cpu ID of the first particle of the chain */
int FOF_CPUTail; /*!< cpu ID of the last particle of the chain */
int FOF_CPUNext; /*!< cpu ID of the next particle of the chain */
int FOF_CPUPrev; /*!< cpu ID of the previous particle of the chain */
int FOF_Head; /*!< first particle of the chain */
int FOF_Tail; /*!< last particle of the chain */
int FOF_Next; /*!< next particle in the chain */
int FOF_Prev; /*!< previous particle in the chain */
int FOF_gid; /*!< group id */
int FOF_Len; /*!< length of the chain */
int FOF_Done; /*!< the particle is done (used for pseudo heads) */
FLOAT FOF_DensMax;
FLOAT FOF_MassMax;
FLOAT FOF_MassMin;
FLOAT FOF_MassSSP;
FLOAT FOF_NStars;
#ifdef CHIMIE_OPTIMAL_SAMPLING
FLOAT OptIMF_k;
FLOAT OptIMF_CurrentMass;
#endif
#endif
#ifdef METAL_DIFFUSION
FLOAT RmsSpeed;
FLOAT MetalDiffusionCoeff;
FLOAT MetalDiffusionA;
FLOAT MetalDiffusionB[NELEMENTS];
#endif
}
*SphP, /*!< holds SPH particle data on local processor */
#ifdef PY_INTERFACE
*SphQ,
*DomainSphBufQ, /*!< buffer for SPH particle data in domain decomposition */
#endif
*DomainSphBuf; /*!< buffer for SPH particle data in domain decomposition */
#ifdef FOF
extern struct fof_particles_in
{
FLOAT Mass;
FLOAT MassNew;
FLOAT MassMax;
FLOAT MassMin;
FLOAT MassSSP;
FLOAT k;
FLOAT Pos[3];
int NStars;
int ID;
int Index;
int Task;
}
*FoF_P,*FoF_P_local;
extern struct fof_groups_data
{
int Index; /*!< group index (used when the group is send) */
int Head; /*!< head index */
int HeadID; /*!< head id, -1 if the head is not local */
int LocalHead; /*!< index to local head */
int Task; /*!< task hosting the true head */
int N; /*!< number of members */
int Nlocal; /*!< number of local members */
float Mass; /*!< total mass */
float MassCenter[3]; /*!< mass center */
float DensityMax; /*!< density max */
float DensityMin; /*!< density min */
float MV[3];
float MV2[3];
float RadiusMax;
float K;
float W;
float U;
float T;
float Density;
float HeadPos[3];
float HeadPotential;
int SfrFlag;
}
*Groups,*GroupsGet,*GroupsRecv;
extern int *Tot_HeadID_list;
extern int Tot_Ngroups;
extern int Tot_Ntgroups;
extern int Tot_Npgroups;
extern int Tot_Ntsfrgroups;
extern int Ngroups; /* true and pseudo groups */
extern int Ntgroups; /* true groups */
extern int Npgroups; /* pseudo groups */
extern int Ntsfrgroups; /* true groups that forms stars */
extern int Nsfrgroups; /* local number of groups flagged for sfr */
extern int Tot_Nsfrgroups; /* total number of groups flagged for sfr */
#endif
#ifdef GAS_ACCRETION
extern struct acc_particle_data
{
FLOAT Pos[3];
FLOAT Vel[3];
FLOAT Mass;
FLOAT Time;
int Type;
int ID;
}
*Acc;
extern struct gas_acc_particle_data
{
FLOAT Entropy;
#ifdef CHIMIE
FLOAT Metal[NELEMENTS];
#endif
}
*SphAcc;
#endif
#ifdef STELLAR_PROP
/* the following struture holds data that is stored for each SPH particle in addition to the collisionless
* variables.
*/
extern struct st_particle_data
{
#ifdef CHECK_ID_CORRESPONDENCE
unsigned int ID; /*!< particle identifier (must be the same as P[].ID) only used to check ID correspondance */
#endif
FLOAT FormationTime; /*!< star formation time of particle */
FLOAT InitialMass; /*!< initial stellar mass */
#ifndef LONGIDS
unsigned int IDProj; /*!< id of projenitor particle */
#else
unsigned long long IDProj; /*!< id of projenitor particle */
#endif
FLOAT Metal[NELEMENTS];
FLOAT Density; /*!< current baryonic mass density of particle */
FLOAT Y; /*!< elements weighting normalisation */
FLOAT Hsml; /*!< current smoothing length */
FLOAT Left; /*!< lower bound in iterative smoothing length search */
FLOAT Right; /*!< upper bound in iterative smoothing length search */
FLOAT NumNgb; /*!< weighted number of neighbours found */
unsigned int PIdx; /*!< index to the corresponding particle */
#ifdef AVOIDNUMNGBPROBLEM
FLOAT OldNumNgb;
#endif
FLOAT DhsmlDensityFactor; /*!< correction factor needed in the equation of motion of the conservative entropy formulation of SPH */
double TotalEjectedGasMass;
double TotalEjectedEltMass[NELEMENTS];
double TotalEjectedEgySpec;
double NumberOfSNIa;
double NumberOfSNII;
#ifdef CHIMIE_KINETIC_FEEDBACK
double NgbMass; /*!< mass of neighbours */
#endif
#ifdef CHIMIE
unsigned int Flag;
#endif
#ifdef CHIMIE_OPTIMAL_SAMPLING
float OptIMF_CurrentMass;
int OptIMF_N_WD;
float OptIMF_k; /*!< kroupa normalization */
float OptIMF_m_max; /*!< max mass of star in the "cluster">*/
#endif
#ifdef FOF_SFR
FLOAT MassMax; /*!< maximal stellar mass contained by the particle */
FLOAT MassMin; /*!< minimal stellar mass contained by the particle */
FLOAT MassSSP; /*!< mass of the total SSP */
int NStars; /*!< number of stars contained by the particle. If =-1, the particle represents a portion of the IMF */
#endif
#if CHIMIE_EJECTA_RADIUS == 2
FLOAT Pressure;
#endif
}
*StP, /*!< holds ST particle data on local processor */
*DomainStBuf; /*!< buffer for ST particle data in domain decomposition */
#endif
/* Variables for Tree
*/
extern int MaxNodes; /*!< maximum allowed number of internal nodes */
extern int Numnodestree; /*!< number of (internal) nodes in each tree */
extern struct NODE
{
FLOAT len; /*!< sidelength of treenode */
FLOAT center[3]; /*!< geometrical center of node */
#ifdef ADAPTIVE_GRAVSOFT_FORGAS
FLOAT maxsoft; /*!< hold the maximum gravitational softening of particles in the
node if the ADAPTIVE_GRAVSOFT_FORGAS option is selected */
#endif
#ifdef STELLAR_FLUX
FLOAT starlum ; /*!< star luminosity of node */
#endif
union
{
int suns[8]; /*!< temporary pointers to daughter nodes */
struct
{
FLOAT s[3]; /*!< center of mass of node */
FLOAT mass; /*!< mass of node */
int bitflags; /*!< a bit-field with various information on the node */
int sibling; /*!< this gives the next node in the walk in case the current node can be used */
int nextnode; /*!< this gives the next node in case the current node needs to be opened */
int father; /*!< this gives the parent node of each node (or -1 if we have the root node) */
}
d;
}
u;
}
*Nodes_base, /*!< points to the actual memory allocted for the nodes */
*Nodes; /*!< this is a pointer used to access the nodes which is shifted such that Nodes[All.MaxPart]
gives the first allocated node */
extern int *Nextnode; /*!< gives next node in tree walk */
extern int *Father; /*!< gives parent node in tree */
extern struct extNODE /*!< this structure holds additional tree-node information which is not needed in the actual gravity computation */
{
FLOAT hmax; /*!< maximum SPH smoothing length in node. Only used for gas particles */
FLOAT vs[3]; /*!< center-of-mass velocity */
}
*Extnodes_base, /*!< points to the actual memory allocted for the extended node information */
*Extnodes; /*!< provides shifted access to extended node information, parallel to Nodes/Nodes_base */
/*! Header for the standard file format.
*/
extern struct io_header
{
int npart[6]; /*!< number of particles of each type in this file */
double mass[6]; /*!< mass of particles of each type. If 0, then the masses are explicitly
stored in the mass-block of the snapshot file, otherwise they are omitted */
double time; /*!< time of snapshot file */
double redshift; /*!< redshift of snapshot file */
int flag_sfr; /*!< flags whether the simulation was including star formation */
int flag_feedback; /*!< flags whether feedback was included (obsolete) */
unsigned int npartTotal[6]; /*!< total number of particles of each type in this snapshot. This can be
different from npart if one is dealing with a multi-file snapshot. */
int flag_cooling; /*!< flags whether cooling was included */
int num_files; /*!< number of files in multi-file snapshot */
double BoxSize; /*!< box-size of simulation in case periodic boundaries were used */
double Omega0; /*!< matter density in units of critical density */
double OmegaLambda; /*!< cosmological constant parameter */
double HubbleParam; /*!< Hubble parameter in units of 100 km/sec/Mpc */
int flag_stellarage; /*!< flags whether the file contains formation times of star particles */
int flag_metals; /*!< flags whether the file contains metallicity values for gas and star particles */
unsigned int npartTotalHighWord[6]; /*!< High word of the total number of particles of each type */
int flag_entropy_instead_u; /*!< flags that IC-file contains entropy instead of u */
int flag_chimie_extraheader; /*!< flags that IC-file contains extra-header for chimie */
#ifdef MULTIPHASE
double critical_energy_spec;
#ifdef MESOMACHINE
char fill[38];
#else
char fill[48]; /* use 42 with regor... */
#endif
#else
char fill[56]; /*!< fills to 256 Bytes */
#endif
}
header; /*!< holds header for snapshot files */
#ifdef CHIMIE_EXTRAHEADER
/*! Header for the chimie part.
*/
extern struct io_chimie_extraheader
{
int nelts; /*!< number of chemical element followed */
float SolarMassAbundances[NELEMENTS];
char labels[256-4-4*(NELEMENTS)];
}
chimie_extraheader;
#endif
#define IO_NBLOCKS 24 /*!< total number of defined information blocks for snapshot files.
Must be equal to the number of entries in "enum iofields" */
enum iofields /*!< this enumeration lists the defined output blocks in snapshot files. Not all of them need to be present. */
{
IO_POS,
IO_VEL,
IO_ID,
IO_MASS,
IO_U,
IO_RHO,
IO_HSML,
IO_POT,
IO_ACCEL,
IO_DTENTR,
IO_TSTP,
IO_ERADSPH,
IO_ERADSTICKY,
IO_ERADFEEDBACK,
IO_ENERGYFLUX,
IO_METALS,
IO_STAR_FORMATIONTIME,
IO_INITIAL_MASS,
IO_STAR_IDPROJ,
IO_STAR_RHO,
IO_STAR_HSML,
IO_STAR_METALS,
IO_OPTVAR1,
IO_OPTVAR2
};
extern char Tab_IO_Labels[IO_NBLOCKS][4]; /*<! This table holds four-byte character tags used for fileformat 2 */
/* global state of system, used for global statistics
*/
extern struct state_of_system
{
double Mass;
double EnergyKin;
double EnergyPot;
double EnergyInt;
#ifdef COOLING
double EnergyRadSph;
#endif
#ifdef AGN_HEATING
double EnergyAGNHeat;
#endif
#ifdef DISSIPATION_FORCES
double EnergyDissipationForces;
#endif
#ifdef MULTIPHASE
double EnergyRadSticky;
#endif
#ifdef FEEDBACK_WIND
double EnergyFeedbackWind;
#endif
#ifdef BUBBLES
double EnergyBubbles;
#endif
#ifdef CHIMIE_THERMAL_FEEDBACK
double EnergyThermalFeedback;
#endif
#ifdef CHIMIE_KINETIC_FEEDBACK
double EnergyKineticFeedback;
#endif
#ifdef INTEGRAL_CONSERVING_DISSIPATION
double EnergyICDissipation;
#endif
double EnergyTot;
double Momentum[4];
double AngMomentum[4];
double CenterOfMass[4];
double MassComp[6];
double EnergyKinComp[6];
double EnergyPotComp[6];
double EnergyIntComp[6];
#ifdef COOLING
double EnergyRadSphComp[6];
#endif
#ifdef AGN_HEATING
double EnergyAGNHeatComp[6];
#endif
#ifdef MULTIPHASE
double EnergyRadStickyComp[6];
#endif
#ifdef FEEDBACK_WIND
double EnergyFeedbackWindComp[6];
#endif
#ifdef BUBBLES
double EnergyBubblesComp[6];
#endif
#ifdef CHIMIE_THERMAL_FEEDBACK
double EnergyThermalFeedbackComp[6];
#endif
#ifdef CHIMIE_KINETIC_FEEDBACK
double EnergyKineticFeedbackComp[6];
#endif
double EnergyTotComp[6];
double MomentumComp[6][4];
double AngMomentumComp[6][4];
double CenterOfMassComp[6][4];
#ifdef DISSIPATION_FORCES
double EnergyDissipationForcesComp[6];
#endif
#ifdef INTEGRAL_CONSERVING_DISSIPATION
double EnergyICDissipationComp[6];
#endif
}
SysState; /*<! Structure for storing some global statistics about the simulation. */
/*! This structure contains data related to the energy budget.
These values are different for each task. It need to be stored
in the restart flag.
*/
extern struct local_state_of_system
{
double EnergyTest;
double EnergyInt1;
double EnergyInt2;
double EnergyKin1;
double EnergyKin2;
#ifdef COOLING
double RadiatedEnergy;
#endif
#ifdef SFR
double StarEnergyInt;
#ifdef FEEDBACK
double StarEnergyFeedback;
#endif
#endif
#ifdef CHIMIE_THERMAL_FEEDBACK
double EnergyThermalFeedback;
#endif
#ifdef CHIMIE_KINETIC_FEEDBACK
double EnergyKineticFeedback;
#endif
#ifdef MULTIPHASE
double EnergyRadSticky;
#endif
#ifdef FEEDBACK_WIND
double EnergyFeedbackWind;
#endif
#ifdef INTEGRAL_CONSERVING_DISSIPATION
double EnergyICDissipation;
#endif
}
LocalSysState; /*<! Structure for storing some local statistics about the simulation. */
/* Various structures for communication
*/
extern struct gravdata_in
{
union
{
FLOAT Pos[3];
FLOAT Acc[3];
FLOAT Potential;
}
u;
#if defined(UNEQUALSOFTENINGS) || defined(STELLAR_FLUX)
int Type;
#ifdef ADAPTIVE_GRAVSOFT_FORGAS
FLOAT Soft;
#endif
#endif
#ifdef STELLAR_FLUX
FLOAT EnergyFlux;
#endif
union
{
FLOAT OldAcc;
int Ninteractions;
}
w;
}
*GravDataIn, /*!< holds particle data to be exported to other processors */
*GravDataGet, /*!< holds particle data imported from other processors */
*GravDataResult, /*!< holds the partial results computed for imported particles. Note: We use GravDataResult = GravDataGet, such that the result replaces the imported data */
*GravDataOut; /*!< holds partial results received from other processors. This will overwrite the GravDataIn array */
extern struct gravdata_index
{
int Task;
int Index;
int SortIndex;
}
*GravDataIndexTable; /*!< the particles to be exported are grouped by task-number. This table allows the results to be disentangled again and to be assigned to the correct particle */
extern struct densdata_in
{
FLOAT Pos[3];
FLOAT Vel[3];
FLOAT Hsml;
#ifdef MULTIPHASE
int Phase;
#endif
int Index;
int Task;
#ifdef ART_CONDUCTIVITY
FLOAT EnergyIntPred;
#endif
}
*DensDataIn, /*!< holds particle data for SPH density computation to be exported to other processors */
*DensDataGet; /*!< holds imported particle data for SPH density computation */
extern struct densdata_out
{
FLOAT Rho;
FLOAT Div, Rot[3];
FLOAT DhsmlDensity;
FLOAT Ngb;
#ifdef ART_CONDUCTIVITY
FLOAT GradEnergyInt[3];
#endif
#ifdef DENSITY_INDEPENDENT_SPH
FLOAT EgyRho;
FLOAT DhsmlEgyDensity;
#endif
#ifdef CHIMIE_SMOOTH_METALS
FLOAT RhoMetal[NELEMENTS];
#endif
#ifdef METAL_DIFFUSION
FLOAT RmsSpeed;
#endif
}
*DensDataResult, /*!< stores the locally computed SPH density results for imported particles */
*DensDataPartialResult; /*!< imported partial SPH density results from other processors */
extern struct hydrodata_in
{
FLOAT Pos[3];
FLOAT Vel[3];
FLOAT Hsml;
#ifdef FEEDBACK
FLOAT EnergySN;
#endif
#ifdef MULTIPHASE
int Phase;
FLOAT Entropy;
int StickyFlag;
#endif
FLOAT Mass;
FLOAT Density;
FLOAT Pressure;
FLOAT F1;
FLOAT DhsmlDensityFactor;
int Timestep;
int Task;
int Index;
#ifdef WITH_ID_IN_HYDRA
int ID;
#endif
#ifdef ART_CONDUCTIVITY
FLOAT NormGradEnergyInt;
#endif
#if defined(ART_VISCO_MM)|| defined(ART_VISCO_RO) || defined(ART_VISCO_CD)
double ArtBulkViscConst;
#endif
#ifdef DENSITY_INDEPENDENT_SPH
FLOAT EgyRho;
FLOAT EntVarPred;
#endif
#if defined(TIMESTEP_UPDATE_FOR_FEEDBACK) && defined(CHIMIE_THERMAL_FEEDBACK)
FLOAT PressureFeedbackUpdated;
FLOAT F1FeedbackUpdated;
#endif
#ifdef METAL_DIFFUSION
FLOAT MetalDiffusionCoeff;
#endif
}
*HydroDataIn, /*!< holds particle data for SPH hydro-force computation to be exported to other processors */
*HydroDataGet; /*!< holds imported particle data for SPH hydro-force computation */
extern struct hydrodata_out
{
FLOAT Acc[3];
FLOAT DtEntropy;
#ifdef FEEDBACK
FLOAT DtEgySpecFeedback;
FLOAT FeedbackAccel[3]; /*!< acceleration due to feedback force */
#endif
FLOAT MaxSignalVel;
#ifdef COMPUTE_VELOCITY_DISPERSION
FLOAT VelocityDispersion[VELOCITY_DISPERSION_SIZE];
#endif
#ifdef MULTIPHASE
FLOAT StickyDVel[3]; /*!< differences in velocities induced by sticky collisions */
#endif
#ifdef OUTPUT_CONDUCTIVITY
FLOAT OptVar2;
#endif
#ifdef ART_VISCO_CD
double DmatCD[3][3];
double TmatCD[3][3];
double R_CD;
FLOAT MaxSignalVelCD;
#endif
#if defined(TIMESTEP_UPDATE_FOR_FEEDBACK) && defined(CHIMIE_THERMAL_FEEDBACK)
FLOAT AccFeedbackUpdated[3];
FLOAT maxSignalVelFeedbackUpdated;
#endif
#ifdef METAL_DIFFUSION
FLOAT MetalDiffusionA;
FLOAT MetalDiffusionB[NELEMENTS];
#endif
}
*HydroDataResult, /*!< stores the locally computed SPH hydro results for imported particles */
*HydroDataPartialResult; /*!< imported partial SPH hydro-force results from other processors */
#ifdef MULTIPHASE
extern struct stickydata_in
{
FLOAT Pos[3];
FLOAT Vel[3];
FLOAT Mass;
FLOAT Hsml;
int ID;
int StickyMaxID;
int StickyNgb;
float StickyMaxFs;
int Task;
int Index;
}
*StickyDataIn, /*!< holds particle data for sticky computation to be exported to other processors */
*StickyDataGet; /*!< holds imported particle data for sticky computation */
extern struct stickydata_out
{
int StickyMaxID;
int StickyNgb;
float StickyMaxFs;
FLOAT StickyNewVel[3];
}
*StickyDataResult, /*!< stores the locally computed sticky results for imported particles */
*StickyDataPartialResult; /*!< imported partial sticky results from other processors */
extern struct Sticky_index
{
int Index;
int CellIndex;
int Flag;
}
*StickyIndex;
#endif
#ifdef CHIMIE
extern struct chimiedata_in
{
FLOAT Pos[3];
FLOAT Vel[3];
#ifndef LONGIDS
unsigned int ID; /*!< particle identifier */
#else
unsigned long long ID; /*!< particle identifier */
#endif
FLOAT Hsml;
#ifdef FEEDBACK
FLOAT EnergySN;
#endif
#ifdef MULTIPHASE
int Phase;
FLOAT Entropy;
int StickyFlag;
#endif
FLOAT Density;
FLOAT Y;
FLOAT Pressure;
FLOAT F1;
FLOAT DhsmlDensityFactor;
int Timestep;
int Task;
int Index;
double TotalEjectedGasMass;
double TotalEjectedEltMass[NELEMENTS];
double TotalEjectedEgySpec;
double NumberOfSNIa;
double NumberOfSNII;
#ifdef CHIMIE_KINETIC_FEEDBACK
FLOAT NgbMass;
#endif
}
*ChimieDataIn, /*!< holds particle data for Chimie computation to be exported to other processors */
*ChimieDataGet; /*!< holds imported particle data for Chimie computation */
extern struct chimiedata_out
{
FLOAT Acc[3];
FLOAT DtEntropy;
#ifdef FEEDBACK
FLOAT DtEgySpecFeedback;
FLOAT FeedbackAccel[3]; /*!< acceleration due to feedback force */
#endif
FLOAT MaxSignalVel;
#ifdef COMPUTE_VELOCITY_DISPERSION
FLOAT VelocityDispersion[VELOCITY_DISPERSION_SIZE];
#endif
#ifdef MULTIPHASE
FLOAT StickyDVel[3]; /*!< differences in velocities induced by sticky collisions */
#endif
}
*ChimieDataResult, /*!< stores the locally computed Chimie results for imported particles */
*ChimieDataPartialResult; /*!< imported partial Chimie results from other processors */
extern struct starsdensdata_in
{
FLOAT Pos[3];
FLOAT Hsml;
int Index;
int Task;
}
*StarsDensDataIn, /*!< holds particle data for SPH density computation to be exported to other processors */
*StarsDensDataGet; /*!< holds imported particle data for SPH density computation */
extern struct starsdensdata_out
{
FLOAT Rho;
FLOAT Y;
FLOAT DhsmlDensity;
FLOAT Ngb;
#ifdef CHIMIE_KINETIC_FEEDBACK
FLOAT NgbMass;
#endif
#if CHIMIE_EJECTA_RADIUS == 2
FLOAT Pressure;
#endif
}
*StarsDensDataResult, /*!< stores the locally computed SPH density results for imported particles */
*StarsDensDataPartialResult; /*!< imported partial SPH density results from other processors */
#endif /*CHIMIE*/
#ifdef DISSIPATION_FORCES
extern struct dissipationforcesdata_in
{
FLOAT Pos[3];
FLOAT Vel[3];
FLOAT Hsml;
FLOAT Mass;
FLOAT Density;
int Task;
int Index;
}
*DissipationForcesDataIn, /*!< holds particle data for SPH hydro-force computation to be exported to other processors */
*DissipationForcesDataGet; /*!< holds imported particle data for SPH hydro-force computation */
extern struct dissipationforcesdata_out
{
FLOAT Acc[3];
FLOAT DtEnergy;
}
*DissipationForcesDataResult, /*!< stores the locally computed SPH hydro results for imported particles */
*DissipationForcesDataPartialResult; /*!< imported partial SPH hydro-force results from other processors */
#endif /* DISSIPATION_FORCES */
#ifdef FOF
extern struct FOFdata_in
{
FLOAT Pos[3];
FLOAT Hsml;
FLOAT Density;
int ID;
int FOF_Head;
int FOF_Tail;
int FOF_Prev;
int FOF_Next;
int FOF_CPUHead; /*!< index of the particle in its local proc */
int FOF_CPUPrev; /*!< index of the particle in its local proc */
int FOF_idx;
FLOAT FOF_DensMax;
int Task;
int Index;
}
*FOFDataIn, /*!< holds particle data for SPH hydro-force computation to be exported to other processors */
*FOFDataGet; /*!< holds imported particle data for SPH hydro-force computation */
extern struct FOFdata_out
{
int FOF_Head;
int FOF_Prev;
FLOAT FOF_DensMax;
int FOF_CPUHead;
int FOF_CPUPrev;
int FOF_Done;
}
*FOFDataResult, /*!< stores the locally computed SPH hydro results for imported particles */
*FOFDataPartialResult; /*!< imported partial SPH hydro-force results from other processors */
#endif /* FOF */
#ifdef TESSEL
extern struct ghostdata_in
{
FLOAT Pos[3];
FLOAT rSearch;
int Index;
int Task;
}
*GhostDataIn, /*!< holds particle data for SPH density computation to be exported to other processors */
*GhostDataGet; /*!< holds imported particle data for SPH density computation */
extern struct ghostdata_out
{
FLOAT Value;
}
*GhostDataResult, /*!< stores the locally computed SPH density results for imported particles */
*GhostDataPartialResult; /*!< imported partial SPH density results from other processors */
/* ghost particles */
//extern struct ghost_particle_data
//{
// FLOAT Pos[3]; /*!< particle position at its current time */
// FLOAT Mass; /*!< particle mass */
//}
// *gP;
extern int NumgPart;
#endif /* TESSEL */
#ifdef SYNCHRONIZE_NGB_TIMESTEP
extern struct SynchroinzeNgbTimestepdata_in
{
FLOAT Pos[3];
FLOAT Hsml;
int Ti_step;
int Ti_endstep;
int Index;
int Task;
#ifdef MULTIPHASE
int Phase;
#endif
}
*SynchroinzeNgbTimestepDataIn,
*SynchroinzeNgbTimestepDataGet;
#endif
#ifdef PY_INTERFACE
extern struct denssphdata_in
{
FLOAT Pos[3];
FLOAT Vel[3];
FLOAT Hsml;
FLOAT Density;
FLOAT DhsmlDensityFactor;
int Index;
int Task;
FLOAT Observable;
}
*DensSphDataIn, /*!< holds particle data for SPH density computation to be exported to other processors */
*DensSphDataGet; /*!< holds imported particle data for SPH density computation */
extern struct denssphdata_out
{
FLOAT Rho;
FLOAT Div, Rot[3];
FLOAT DhsmlDensity;
FLOAT Ngb;
FLOAT GradObservable[3];
}
*DensSphDataResult, /*!< stores the locally computed SPH density results for imported particles */
*DensSphDataPartialResult; /*!< imported partial SPH density results from other processors */
extern struct sphdata_in
{
FLOAT Pos[3];
FLOAT Vel[3];
FLOAT Hsml;
FLOAT Density;
FLOAT DhsmlDensityFactor;
FLOAT ObsMoment0;
FLOAT ObsMoment1;
FLOAT Observable;
int Task;
int Index;
}
*SphDataIn, /*!< holds particle data for SPH hydro-force computation to be exported to other processors */
*SphDataGet; /*!< holds imported particle data for SPH hydro-force computation */
extern struct sphdata_out
{
FLOAT ObsMoment0;
FLOAT ObsMoment1;
FLOAT GradObservable[3];
}
*SphDataResult, /*!< stores the locally computed SPH hydro results for imported particles */
*SphDataPartialResult; /*!< imported partial SPH hydro-force results from other processors */
#endif /*PY_INTERFACE*/
#endif
diff --git a/src/begrun.c b/src/begrun.c
index 6bc04ef..e34938b 100644
--- a/src/begrun.c
+++ b/src/begrun.c
@@ -1,2441 +1,2446 @@
#include <stdio.h>
#include <stdlib.h>
#include <string.h>
#include <math.h>
#include <mpi.h>
#include <sys/types.h>
#include <unistd.h>
#include <gsl/gsl_rng.h>
#include "allvars.h"
#include "proto.h"
/*! \file begrun.c
* \brief initial set-up of a simulation run
*
* This file contains various functions to initialize a simulation run. In
* particular, the parameterfile is read in and parsed, the initial
* conditions or restart files are read, and global variables are
* initialized to their proper values.
*/
/*! This function performs the initial set-up of the simulation. First, the
* parameterfile is set, then routines for setting units, reading
* ICs/restart-files are called, auxialiary memory is allocated, etc.
*/
void begrun(void)
{
struct global_data_all_processes all;
#ifdef DETAILED_CPU
double tstart,tend;
tstart = second();
#endif
if(ThisTask == 0)
{
printf("\nThis is Gadget, version `%s'.\n", GADGETVERSION);
printf("\nRunning on %d processors.\n", NTask);
}
read_parameter_file(ParameterFile); /* ... read in parameters for this run */
allocate_commbuffers(); /* ... allocate buffer-memory for particle
exchange during force computation */
set_units();
#if defined(PERIODIC) && (!defined(PMGRID) || defined(FORCETEST))
ewald_init();
#endif
open_outputfiles();
random_generator = gsl_rng_alloc(gsl_rng_ranlxd1);
#ifdef RANDOMSEED_AS_PARAMETER
if(ThisTask == 0)
printf("Using %d as initial random seed\n",All.RandomSeed);
gsl_rng_set(random_generator, All.RandomSeed); /* start-up seed */
#else
if(ThisTask == 0)
printf("Using %d as initial random seed\n",42);
gsl_rng_set(random_generator, 42); /* start-up seed */
#endif
#ifdef PMGRID
long_range_init();
#endif
All.TimeLastRestartFile = CPUThisRun;
#ifdef MULTIPHASE
All.StickyLastCollisionTime = All.TimeBegin;
#endif
#ifdef COSMICTIME
if(All.ComovingIntegrationOn)
{
if (ThisTask==0)
printf("Initialize cosmic table\n");
init_cosmictime_table();
if (ThisTask==0)
printf("Initialize cosmic table done.\n");
}
if (ThisTask==0)
printf("Initialize full cosmic table\n");
init_full_cosmictime_table();
if (ThisTask==0)
printf("Initialize full cosmic table done.\n");
#endif
/* other physics initialization */
#ifdef COOLING
if (All.CoolingType==0) /* sutherland */
{
if(ThisTask == 0) printf("Initialize cooling function...\n");
init_cooling(0);
if(ThisTask == 0) printf("Initialize cooling function done.\n");
}
if (All.CoolingType==2) /* cooling with metals */
{
if(ThisTask == 0) printf("Initialize cooling function...\n");
#ifdef COOLING_WIERSMA
//InitWiersmaCooling("/home/epfl/revaz/code/gear/PyCool/tables_wiersma/coolingtables/");
InitWiersmaCooling(All.CoolingDirectory);
//SetRedshiftInterpolationOff();
#else
#ifdef COOLING_GRACKLE
init_cooling_GRACKLE();
#else
init_cooling_with_metals();
#endif
#endif
if(ThisTask == 0) printf("Initialize cooling function done.\n");
}
#endif
#ifdef CHIMIE
int i;
if(ThisTask == 0) printf("Initialize chimie...\n");
init_chimie();
check_chimie();
if(ThisTask == 0)
{
for (i=0;i<get_nelts();i++)
printf("solar mass abundance %s\t= %g\n",get_Element(i),get_SolarMassAbundance(i));
}
if(ThisTask == 0) printf("Initialize chimie done...\n");
#endif
#ifdef COOLING
#ifdef CHIMIE
All.CoolingParameters_FeHSolar = get_SolarMassAbundance(FE); /* for consitency, use the value defined in chimie file */
#else
All.CoolingParameters_FeHSolar = FEH_SOLAR; /* use a default value */
#endif
#endif
#ifdef AB_TURB
init_turb();
#endif
#ifdef ART_VISCO_CD
art_visc_allocate();
#endif
#ifdef CHIMIE_ONE_SN_ONLY
All.ChimieOneSN=0;
#endif
if(RestartFlag == 0 || RestartFlag == 2)
{
set_random_numbers();
init(); /* ... read in initial model */
init_local_sys_state();
}
else
{
all = All; /* save global variables. (will be read from restart file) */
restart(RestartFlag); /* ... read restart file. Note: This also resets
all variables in the struct `All'.
However, during the run, some variables in the parameter
file are allowed to be changed, if desired. These need to
copied in the way below.
Note: All.PartAllocFactor is treated in restart() separately.
*/
/* yr
if we want a parameter to be taken as the one written in the parameter file,
we have to save it below,
instead, the value of the restart file will be taken.
This is usefull, for example, if stop a run and want it to be restarted with
different parameters.
*/
All.MinSizeTimestep = all.MinSizeTimestep;
All.MaxSizeTimestep = all.MaxSizeTimestep;
All.BufferSize = all.BufferSize;
All.BunchSizeForce = all.BunchSizeForce;
All.BunchSizeDensity = all.BunchSizeDensity;
All.BunchSizeHydro = all.BunchSizeHydro;
All.BunchSizeDomain = all.BunchSizeDomain;
#ifdef MULTIPHASE
All.BunchSizeSticky = all.BunchSizeSticky;
#endif
#ifdef CHIMIE
All.BunchSizeChimie = all.BunchSizeChimie;
#endif
All.TimeLimitCPU = all.TimeLimitCPU;
All.ResubmitOn = all.ResubmitOn;
All.TimeBetSnapshot = all.TimeBetSnapshot;
All.TimeBetStatistics = all.TimeBetStatistics;
All.CpuTimeBetRestartFile = all.CpuTimeBetRestartFile;
All.ErrTolIntAccuracy = all.ErrTolIntAccuracy;
All.MaxRMSDisplacementFac = all.MaxRMSDisplacementFac;
All.ErrTolForceAcc = all.ErrTolForceAcc;
All.TypeOfTimestepCriterion = all.TypeOfTimestepCriterion;
All.TypeOfOpeningCriterion = all.TypeOfOpeningCriterion;
All.NumFilesWrittenInParallel = all.NumFilesWrittenInParallel;
All.TreeDomainUpdateFrequency = all.TreeDomainUpdateFrequency;
All.SnapFormat = all.SnapFormat;
All.NumFilesPerSnapshot = all.NumFilesPerSnapshot;
All.MaxNumNgbDeviation = all.MaxNumNgbDeviation;
All.ArtBulkViscConst = all.ArtBulkViscConst;
#ifdef ART_CONDUCTIVITY
All.ArtCondConst = all.ArtCondConst;
All.ArtCondThreshold = all.ArtCondThreshold;
#endif
All.OutputListOn = all.OutputListOn;
All.CourantFac = all.CourantFac;
All.OutputListLength = all.OutputListLength;
memcpy(All.OutputListTimes, all.OutputListTimes, sizeof(double) * All.OutputListLength);
#ifdef RANDOMSEED_AS_PARAMETER
All.RandomSeed = all.RandomSeed;
#endif
#ifdef MULTIPHASE
All.CriticalTemperature = all.CriticalTemperature;
All.CriticalNonCollisionalTemperature = all.CriticalNonCollisionalTemperature;
All.StickyUseGridForCollisions = all.StickyUseGridForCollisions;
All.StickyTime = all.StickyTime;
All.StickyCollisionTime = all.StickyCollisionTime;
All.StickyIdleTime = all.StickyIdleTime;
All.StickyMinVelocity = all.StickyMinVelocity;
All.StickyMaxVelocity = all.StickyMaxVelocity;
All.StickyLambda = all.StickyLambda;
All.StickyDensity = all.StickyDensity;
All.StickyDensityPower = all.StickyDensityPower;
All.StickyRsphFact = all.StickyRsphFact;
All.StickyBetaR = all.StickyBetaR;
All.StickyBetaT = all.StickyBetaT;
All.StickyGridNx = all.StickyGridNx;
All.StickyGridNy = all.StickyGridNy;
All.StickyGridNz = all.StickyGridNz;
All.StickyGridXmin = all.StickyGridXmin;
All.StickyGridXmax = all.StickyGridXmax;
All.StickyGridYmin = all.StickyGridYmin;
All.StickyGridYmax = all.StickyGridYmax;
All.StickyGridZmin = all.StickyGridZmin;
All.StickyGridZmax = all.StickyGridZmax;
#ifdef COLDGAS_CYCLE
All.ColdGasCycleTransitionTime = all.ColdGasCycleTransitionTime;
All.ColdGasCycleTransitionParameter = all.ColdGasCycleTransitionParameter;
#endif
#endif
#ifdef OUTERPOTENTIAL
#ifdef NFW
All.HaloConcentration = all.HaloConcentration;
All.HaloMass = all.HaloMass;
All.GasMassFraction = all.GasMassFraction;
#endif
#ifdef PLUMMER
All.PlummerMass = all.PlummerMass;
All.PlummerSoftenning = all.PlummerSoftenning;
#endif
#ifdef MIYAMOTONAGAI
All.MiyamotoNagaiMass = all.MiyamotoNagaiMass;
All.MiyamotoNagaiHr = all.MiyamotoNagaiHr;
All.MiyamotoNagaiHz = all.MiyamotoNagaiHz;
#endif
#ifdef PISOTHERM
All.Rho0 = all.Rho0;
All.Rc = all.Rc;
All.GasMassFraction = all.GasMassFraction;
#endif
#ifdef CORIOLIS
All.CoriolisOmegaX0 = all.CoriolisOmegaX0;
All.CoriolisOmegaY0 = all.CoriolisOmegaY0;
All.CoriolisOmegaZ0 = all.CoriolisOmegaZ0;
#endif
#endif
#ifdef SFR
//All.StarFormationNStarsFromGas = all.StarFormationNStarsFromGas; /* do not change the param. if restarting, else, StarFormationStarMass will be wrong */
//All.StarFormationStarMass = all.StarFormationStarMass;
All.StarFormationMgMsFraction = all.StarFormationMgMsFraction;
All.StarFormationType = all.StarFormationType;
All.StarFormationCstar = all.StarFormationCstar;
All.StarFormationTime = all.StarFormationTime;
All.StarFormationDensity = all.StarFormationDensity;
All.StarFormationTemperature = all.StarFormationTemperature;
All.ThresholdDensity = all.ThresholdDensity;
#endif
#ifdef FOF
All.FoF_Density = all.FoF_Density;
All.FoF_ThresholdDensityFactor = all.FoF_ThresholdDensityFactor;
All.FoF_MinHeadDensityFactor = all.FoF_MinHeadDensityFactor;
All.FoF_MinGroupMembers = all.FoF_MinGroupMembers;
All.FoF_MinGroupMass = all.FoF_MinGroupMass;
All.FoF_TimeBetFoF = all.FoF_TimeBetFoF;
All.FoF_HsmlSearchRadiusFactor = all.FoF_HsmlSearchRadiusFactor;
All.FoF_HsmlMaxDistFactor = all.FoF_HsmlMaxDistFactor;
+ All.FoF_StarFormationType = all.FoF_StarFormationType;
#endif
#ifdef COOLING
All.CoolingType = all.CoolingType;
All.CutofCoolingTemperature = all.CutofCoolingTemperature;
All.InitGasMetallicity = all.InitGasMetallicity;
#endif
#ifdef CHIMIE
All.ChimieSupernovaEnergy = all.ChimieSupernovaEnergy; /* do not use this value, use the restartfile one */
All.ChimieKineticFeedbackFraction = all.ChimieKineticFeedbackFraction;
All.ChimieWindSpeed = all.ChimieWindSpeed;
All.ChimieWindTime = all.ChimieWindTime;
All.ChimieSNIaThermalTime = all.ChimieSNIaThermalTime;
All.ChimieSNIIThermalTime = all.ChimieSNIIThermalTime;
All.ChimieMaxSizeTimestep = all.ChimieMaxSizeTimestep;
#ifdef CHIMIE_ONE_SN_ONLY
All.ChimieOneSNMass = all.ChimieOneSNMass;
#endif
#if CHIMIE_EJECTA_RADIUS == 1
All.ChimieEjectaRadius = all.ChimieEjectaRadius;
#endif
#endif
#if defined (HEATING_PE)
All.HeatingPeElectronFraction = all.HeatingPeElectronFraction;
#endif
#if defined (HEATING_PE) || defined (STELLAR_FLUX) || defined (EXTERNAL_FLUX)
All.HeatingPeSolarEnergyDensity = all.HeatingPeSolarEnergyDensity;
#endif
#if defined (HEATING_PE) || defined (STELLAR_FLUX)
All.HeatingPeLMRatioGas = all.HeatingPeLMRatioGas;
All.HeatingPeLMRatioHalo = all.HeatingPeLMRatioHalo;
All.HeatingPeLMRatioDisk = all.HeatingPeLMRatioDisk;
All.HeatingPeLMRatioBulge = all.HeatingPeLMRatioBulge;
All.HeatingPeLMRatioStars = all.HeatingPeLMRatioStars;
All.HeatingPeLMRatioBndry = all.HeatingPeLMRatioBndry;
All.HeatingPeLMRatio[0] = all.HeatingPeLMRatio[0];
All.HeatingPeLMRatio[1] = all.HeatingPeLMRatio[1];
All.HeatingPeLMRatio[2] = all.HeatingPeLMRatio[2];
All.HeatingPeLMRatio[3] = all.HeatingPeLMRatio[3];
All.HeatingPeLMRatio[4] = all.HeatingPeLMRatio[4];
All.HeatingPeLMRatio[5] = all.HeatingPeLMRatio[5];
#endif
#ifdef EXTERNAL_FLUX
All.HeatingExternalFLuxEnergyDensity = all.HeatingExternalFLuxEnergyDensity;
#endif
#ifdef FEEDBACK
All.SupernovaEgySpecPerMassUnit = all.SupernovaEgySpecPerMassUnit;
All.SupernovaFractionInEgyKin = all.SupernovaFractionInEgyKin;
All.SupernovaTime = all.SupernovaTime;
#endif
#ifdef FEEDBACK_WIND
All.SupernovaWindEgySpecPerMassUnit = all.SupernovaWindEgySpecPerMassUnit;
All.SupernovaWindFractionInEgyKin = all.SupernovaWindFractionInEgyKin;
All.SupernovaWindParameter = all.SupernovaWindParameter;
All.SupernovaWindIntAccuracy = all.SupernovaWindIntAccuracy;
#endif
#ifdef BUBBLES
All.BubblesDelta = all.BubblesDelta;
All.BubblesAlpha = all.BubblesAlpha;
All.BubblesRadiusFactor = all.BubblesRadiusFactor;
All.BubblesR = all.BubblesR;
#endif
#ifdef AGN_HEATING
All.AGNHeatingPower = all.AGNHeatingPower;
All.AGNHeatingRmax = all.AGNHeatingRmax;
#endif
#ifdef AGN_ACCRETION
All.TimeBetAccretion = all.TimeBetAccretion;
All.AccretionRadius = all.AccretionRadius;
All.AGNFactor = all.AGNFactor;
All.MinMTotInRa = all.MinMTotInRa;
#endif
#ifdef BONDI_ACCRETION
All.BondiEfficiency = all.BondiEfficiency;
All.BondiBlackHoleMass = all.BondiBlackHoleMass;
All.BondiHsmlFactor = all.BondiHsmlFactor;
All.BondiPower = all.BondiPower;
All.BondiTimeBet = all.BondiTimeBet;
#endif
#if defined(ART_VISCO_MM)|| defined(ART_VISCO_RO) || defined(ART_VISCO_CD)
All.ArtBulkViscConstMin = all.ArtBulkViscConstMin;
All.ArtBulkViscConstMax = all.ArtBulkViscConstMax;
All.ArtBulkViscConstL = all.ArtBulkViscConstL;
#endif
#ifdef METAL_DIFFUSION
All.MetalDiffusionConst = all.MetalDiffusionConst;
#endif
#ifdef AB_TURB
All.StDecay = all.StDecay;
All.StEnergy = all.StEnergy;
All.StDtFreq = all.StDtFreq;
All.StKmin = all.StKmin;
All.StKmax = all.StKmax;
All.StSolWeight = all.StSolWeight;
All.StAmplFac = all.StAmplFac;
All.StSpectForm = all.StSpectForm;
All.StSeed = all.StSeed;
#endif
#ifdef SYNCHRONIZE_NGB_TIMESTEP
All.NgbFactorTimestep = all.NgbFactorTimestep;
#endif
strcpy(All.ResubmitCommand, all.ResubmitCommand);
strcpy(All.OutputListFilename, all.OutputListFilename);
strcpy(All.OutputDir, all.OutputDir);
strcpy(All.RestartFile, all.RestartFile);
strcpy(All.EnergyFile, all.EnergyFile);
#ifdef SYSTEMSTATISTICS
strcpy(All.SystemFile, all.SystemFile);
#endif
strcpy(All.InfoFile, all.InfoFile);
strcpy(All.CpuFile, all.CpuFile);
strcpy(All.LogFile, all.LogFile);
#ifdef SFR
strcpy(All.SfrFile, all.SfrFile);
#endif
#ifdef CHIMIE
strcpy(All.ChimieFile, all.ChimieFile);
#endif
#ifdef MULTIPHASE
strcpy(All.PhaseFile, all.PhaseFile);
strcpy(All.StickyFile, all.StickyFile);
#endif
#ifdef AGN_ACCRETION
strcpy(All.AccretionFile, all.AccretionFile);
#endif
#ifdef BONDI_ACCRETION
strcpy(All.BondiFile, all.BondiFile);
#endif
#ifdef BUBBLES
strcpy(All.BubbleFile, all.BubbleFile);
#endif
strcpy(All.TimingsFile, all.TimingsFile);
strcpy(All.SnapshotFileBase, all.SnapshotFileBase);
#ifdef FOF
strcpy(All.FoF_SnapshotFileBase, all.FoF_SnapshotFileBase);
#endif
if(All.TimeMax != all.TimeMax)
readjust_timebase(All.TimeMax, all.TimeMax);
}
#ifdef PMGRID
long_range_init_regionsize();
#endif
if(All.ComovingIntegrationOn)
init_drift_table();
#ifdef COSMICTIME
if(All.ComovingIntegrationOn)
{
if (ThisTask==0)
printf("Initialize cosmic table\n");
init_cosmictime_table();
if (ThisTask==0)
printf("Initialize cosmic table done.\n");
}
if (ThisTask==0)
printf("Initialize full cosmic table\n");
init_full_cosmictime_table();
if (ThisTask==0)
printf("Initialize full cosmic table done.\n");
#endif
if(RestartFlag == 2)
All.Ti_nextoutput = find_next_outputtime(All.Ti_Current + 1);
else
All.Ti_nextoutput = find_next_outputtime(All.Ti_Current);
All.TimeLastRestartFile = CPUThisRun;
/* other initialization for special behavior */
#ifdef SFR
if (ThisTask == 0)
printf("StarFormationStarMass = %g\n\n",All.StarFormationStarMass);
#endif
#ifdef OUTERPOTENTIAL
if(ThisTask == 0) printf("Initialize outer potential...\n");
init_outer_potential();
if(ThisTask == 0) printf("Initialize outer potential done.\n");
#endif
#ifdef BUBBLES
if(ThisTask == 0) printf("Initialize bubble function...\n");
init_bubble();
if(ThisTask == 0) printf("Initialize bubble function done.\n");
#endif
#ifdef MULTIPHASE
if(ThisTask == 0) printf("Initialize sticky...\n");
header.critical_energy_spec = All.CriticalEgySpec;
init_sticky();
if(ThisTask == 0) printf("Initialize sticky done.\n");
#endif
#ifdef PNBODY
if(ThisTask == 0) printf("Initialize pnbody...\n");
init_pnbody();
if(ThisTask == 0) printf("Initialize pnbody done.\n");
#endif
#ifdef DETAILED_CPU
tend = second();
All.CPU_Begrun += timediff(tstart, tend);
All.CPU_Begrun -= All.CPU_Leapfrog;
All.CPU_Begrun -= All.CPU_Domain;
All.CPU_Begrun -= All.CPU_Snapshot;
#endif
}
/*! Computes conversion factors between internal code units and the
* cgs-system.
*/
void set_units(void)
{
double meanweight;
All.UnitTime_in_s = All.UnitLength_in_cm / All.UnitVelocity_in_cm_per_s;
All.UnitTime_in_Megayears = All.UnitTime_in_s / SEC_PER_MEGAYEAR;
if(All.GravityConstantInternal == 0)
All.G = GRAVITY / pow(All.UnitLength_in_cm, 3) * All.UnitMass_in_g * pow(All.UnitTime_in_s, 2);
else
All.G = All.GravityConstantInternal;
All.UnitDensity_in_cgs = All.UnitMass_in_g / pow(All.UnitLength_in_cm, 3);
All.UnitPressure_in_cgs = All.UnitMass_in_g / All.UnitLength_in_cm / pow(All.UnitTime_in_s, 2);
All.UnitCoolingRate_in_cgs = All.UnitPressure_in_cgs / All.UnitTime_in_s;
All.UnitEnergy_in_cgs = All.UnitMass_in_g * pow(All.UnitLength_in_cm, 2) / pow(All.UnitTime_in_s, 2);
/* convert some physical input parameters to internal units */
All.Hubble = HUBBLE * All.UnitTime_in_s;
meanweight = 4.0 / (1 + 3 * HYDROGEN_MASSFRAC); /* note: we assume neutral gas here */
/*meanweight = 4 / (8 - 5 * (1 - HYDROGEN_MASSFRAC));*/ /* note: we assume FULL ionized gas here */
All.Boltzmann = BOLTZMANN /All.UnitEnergy_in_cgs;
All.ProtonMass = PROTONMASS/All.UnitMass_in_g;
All.mumh = All.ProtonMass*meanweight;
#ifdef MULTIPHASE
All.StickyTime *= 3.1536e+13*All.HubbleParam/All.UnitTime_in_s; /* Myr to code unit */
All.StickyCollisionTime *= 3.1536e+13*All.HubbleParam/All.UnitTime_in_s; /* Myr to code unit */
All.StickyIdleTime *= 3.1536e+13*All.HubbleParam/All.UnitTime_in_s; /* Myr to code unit */
All.StickyMinVelocity *=1e5/All.UnitVelocity_in_cm_per_s; /* km/s to code unit */
All.StickyMaxVelocity *=1e5/All.UnitVelocity_in_cm_per_s; /* km/s to code unit */
if (All.StickyTime==0)
All.StickyLambda = 0;
else
All.StickyLambda = 1./All.StickyTime;
All.CriticalEgySpec = 1./GAMMA_MINUS1 * All.Boltzmann/All.mumh * All.CriticalTemperature;
All.CriticalNonCollisionalEgySpec = 1./GAMMA_MINUS1 * All.Boltzmann/All.mumh * All.CriticalNonCollisionalTemperature;
All.StickyDensity = All.StickyDensity/All.UnitDensity_in_cgs/(All.HubbleParam*All.HubbleParam);
//if((All.StickyLambda > 0.1/All.MaxSizeTimestep)&&(ThisTask==0))
// {
// printf("\nStickyLambda is to big and you may experiment numerical problems !\n");
// printf("You should either decrease StickyLambda or decrease MaxSizeTimestep.\n");
// printf("(StickyLambda=%g,maxStickyLambda=%g)\n",All.StickyLambda,0.01/All.MaxSizeTimestep);
// printf("try \n");
// printf("StickyLambda <= %g or MaxSizeTimestep <= %g \n",(0.01/All.MaxSizeTimestep),(0.01/All.StickyLambda));
// fflush(stdout);
// endrun(121212);
// }
#ifdef COLDGAS_CYCLE
All.ColdGasCycleTransitionTime *= 3.1536e+13*All.HubbleParam/All.UnitTime_in_s; /* Myr to code unit */
#endif
#endif
#ifdef SFR
All.StarFormationTime = All.StarFormationTime/All.UnitTime_in_s * 3.1536e16*All.HubbleParam;
All.StarFormationDensity = All.StarFormationDensity/All.UnitDensity_in_cgs/(All.HubbleParam*All.HubbleParam);
#endif
#ifdef FOF
All.FoF_Density = All.FoF_Density/All.UnitDensity_in_cgs/(All.HubbleParam*All.HubbleParam);
All.FoF_ThresholdDensity = All.FoF_ThresholdDensityFactor*All.FoF_Density;
All.FoF_MinHeadDensity = All.FoF_MinHeadDensityFactor *All.FoF_Density;
All.FoF_MinGroupMass *=SOLAR_MASS/All.UnitMass_in_g*All.HubbleParam; /* to CMU */
#endif
#if defined (HEATING_PE) || defined (STELLAR_FLUX)
All.HeatingPeLMRatio[0] = All.HeatingPeLMRatioGas;
All.HeatingPeLMRatio[1] = All.HeatingPeLMRatioHalo;
All.HeatingPeLMRatio[2] = All.HeatingPeLMRatioDisk;
All.HeatingPeLMRatio[3] = All.HeatingPeLMRatioBulge;
All.HeatingPeLMRatio[4] = All.HeatingPeLMRatioStars;
All.HeatingPeLMRatio[5] = All.HeatingPeLMRatioBndry;
int k;
for (k=0;k<6;k++)
{
All.HeatingPeLMRatio[k] *= 1./SOLAR_MASS; /* erg/s/Msol to erg/s/g */
All.HeatingPeLMRatio[k] *= All.UnitMass_in_g*All.UnitTime_in_s / All.UnitEnergy_in_cgs / All.HubbleParam; /* erg/s/g to code unit */
}
#endif
#ifdef FEEDBACK
All.SupernovaEgySpecPerMassUnit *= All.UnitMass_in_g / All.UnitEnergy_in_cgs;
All.SupernovaTime *= 3.1536e+13*All.HubbleParam/All.UnitTime_in_s; /* Myr to code unit */
#endif
#ifdef FEEDBACK_WIND
All.SupernovaWindEgySpecPerMassUnit *= All.UnitMass_in_g / All.UnitEnergy_in_cgs;
All.SupernovaWindSpeed = sqrt( 2*All.SupernovaWindFractionInEgyKin * All.SupernovaWindEgySpecPerMassUnit / All.SupernovaWindParameter );
#endif
#if defined (AGN_ACCRETION) || defined (BONDI_ACCRETION)
All.LightSpeed = C/All.UnitVelocity_in_cm_per_s;
#endif
#ifdef CHIMIE
All.ChimieSupernovaEnergy = All.ChimieSupernovaEnergy/All.UnitMass_in_g/pow(All.UnitVelocity_in_cm_per_s,2)*All.HubbleParam;
All.ChimieWindSpeed = All.ChimieWindSpeed*1e5/All.UnitVelocity_in_cm_per_s;
All.ChimieWindTime = All.ChimieWindTime*3.1536e13/All.UnitTime_in_s*All.HubbleParam;
All.ChimieSNIaThermalTime = All.ChimieSNIaThermalTime*3.1536e13/All.UnitTime_in_s*All.HubbleParam;
All.ChimieSNIIThermalTime = All.ChimieSNIIThermalTime*3.1536e13/All.UnitTime_in_s*All.HubbleParam;
All.ChimieMaxSizeTimestep = All.ChimieMaxSizeTimestep*3.1536e13/All.UnitTime_in_s*All.HubbleParam;
#endif
#if defined(CHIMIE) || defined(FOF)
All.CMUtoMsol = All.UnitMass_in_g/SOLAR_MASS/All.HubbleParam; /* convertion factor from Code Mass Unit to Solar Mass */
All.MsoltoCMU = 1/All.CMUtoMsol; /* convertion factor from Solar Mass to Code Mass Unit */
#endif
#ifdef CHIMIE
#ifdef CHIMIE_ONE_SN_ONLY
All.ChimieOneSNMass = All.ChimieOneSNMass*All.MsoltoCMU;
#endif
#if CHIMIE_EJECTA_RADIUS == 1
All.ChimieEjectaRadius = All.ChimieEjectaRadius * KPC_IN_CM/All.UnitLength_in_cm * All.HubbleParam; /* kpc to code length units */
#endif
#endif
if(ThisTask == 0)
{
printf("\nHubble (internal units) = %g\n", All.Hubble);
printf("G (internal units) = %g\n", All.G);
printf("Boltzmann = %g \n", All.Boltzmann);
printf("ProtonMass = %g \n", All.ProtonMass);
printf("mumh = %g \n", All.mumh);
printf("UnitMass_in_g = %g \n", All.UnitMass_in_g);
printf("UnitTime_in_s = %g \n", All.UnitTime_in_s);
printf("UnitVelocity_in_cm_per_s = %g \n", All.UnitVelocity_in_cm_per_s);
printf("UnitDensity_in_cgs = %g \n", All.UnitDensity_in_cgs);
printf("UnitEnergy_in_cgs = %g \n", All.UnitEnergy_in_cgs);
printf("\n");
#ifdef SFR
printf("StarFormationDensity (internal units) = %g \n", All.StarFormationDensity);
printf("StarFormationTime (internal units) = %g \n", All.StarFormationTime);
#endif
#ifdef FEEDBACK
printf("SupernovaTime (internal units) = %g \n", All.SupernovaTime);
printf("SupernovaEgySpecPerMassUnit (internal units) = %g \n", All.SupernovaEgySpecPerMassUnit);
#endif
#ifdef FEEDBACK_WIND
printf("SupernovaWindEgySpecPerMassUnit (internal units) = %g \n", All.SupernovaWindEgySpecPerMassUnit);
printf("SupernovaWindSpeed (internal units) = %g \n", All.SupernovaWindSpeed);
#endif
#ifdef MULTIPHASE
printf("CriticalEgySpec (internal units) = %g \n", All.CriticalEgySpec);
printf("CriticalNonCollisionalEgySpec (internal units) = %g \n", All.CriticalNonCollisionalEgySpec);
printf("StickyCollisionTime (internal units) = %g \n", All.StickyCollisionTime);
printf("StickyIdleTime (internal units) = %g \n", All.StickyIdleTime);
printf("StickyDensity (internal units) = %g \n", All.StickyDensity);
printf("StickyTime (internal units) = %g \n", All.StickyTime);
printf("StickyMinVelocity (internal units) = %g \n", All.StickyMinVelocity);
printf("StickyMaxVelocity (internal units) = %g \n", All.StickyMaxVelocity);
#endif
#ifdef COLDGAS_CYCLE
printf("ColdGasCycleTransitionTime (internal units) = %g \n", All.ColdGasCycleTransitionTime);
#endif
#ifdef CHIMIE
printf("ChimieSupernovaEnergy (internal units) = %g \n", All.ChimieSupernovaEnergy);
printf("ChimieWindSpeed (internal units) = %g \n", All.ChimieWindSpeed);
printf("ChimieWindTime (internal units) = %g \n", All.ChimieWindTime);
printf("ChimieSNIaThermalTime (internal units) = %g \n", All.ChimieSNIaThermalTime);
printf("ChimieSNIIThermalTime (internal units) = %g \n", All.ChimieSNIIThermalTime);
printf("ChimieMaxSizeTimestep (internal units) = %g \n", All.ChimieMaxSizeTimestep);
#endif
#ifdef FOF
printf("FoF_Density (internal units) = %g \n",All.FoF_Density);
printf("FoF_ThresholdDensity (internal units) = %g \n",All.FoF_ThresholdDensity);
printf("FoF_MinHeadDensity (internal units) = %g \n",All.FoF_MinHeadDensity);
printf("FoF_MinGroupMass (internal units) = %g \n",All.FoF_MinGroupMass);
printf("FoF_HsmlSearchRadiusFactor (internal units) = %g \n",All.FoF_HsmlSearchRadiusFactor);
#endif
printf("\n");
}
#ifdef ISOTHERM_EQS
All.MinEgySpec = 0;
#else
All.MinEgySpec = 1 / meanweight * (1.0 / GAMMA_MINUS1) * (BOLTZMANN / PROTONMASS) * All.MinGasTemp;
All.MinEgySpec *= All.UnitMass_in_g / All.UnitEnergy_in_cgs;
#endif
}
/*! Initialize local system state variables
*/
void init_local_sys_state(void)
{
#ifdef SFR
LocalSysState.StarEnergyInt = 0.;
#ifdef COOLING
LocalSysState.RadiatedEnergy = 0.;
#endif
#endif
#ifdef CHIMIE_THERMAL_FEEDBACK
LocalSysState.EnergyThermalFeedback = 0.;
#endif
#ifdef CHIMIE_KINETIC_FEEDBACK
LocalSysState.EnergyKineticFeedback = 0.;
#endif
#ifdef MULTIPHASE
LocalSysState.EnergyRadSticky = 0.;
#endif
#ifdef FEEDBACK_WIND
LocalSysState.EnergyFeedbackWind = 0.;
#endif
#ifdef INTEGRAL_CONSERVING_DISSIPATION
LocalSysState.EnergyICDissipation = 0.;
#endif
}
/*! This function opens various log-files that report on the status and
* performance of the simulstion. On restart from restart-files
* (start-option 1), the code will append to these files.
*/
void open_outputfiles(void)
{
char mode[2], buf[200];
#ifdef ADVANCEDSTATISTICS
int i=0;
#endif
if(RestartFlag == 0)
strcpy(mode, "w");
else
strcpy(mode, "a");
/* for this kind of log, all tasks write its own file */
#ifdef CHIMIE
#ifdef CHIMIE_STATS
sprintf(buf, "%s%s_%s.%d", All.OutputDir, All.ChimieFile,"SNs",ThisTask);
if(!(FdChimieStatsSNs = fopen(buf, mode)))
{
printf("error in opening file '%s'\n", buf);
endrun(1);
}
sprintf(buf, "%s%s_%s.%d", All.OutputDir, All.ChimieFile,"Gas",ThisTask);
if(!(FdChimieStatsGas = fopen(buf, mode)))
{
printf("error in opening file '%s'\n", buf);
endrun(1);
}
#endif
#endif
if(ThisTask != 0) /* only the root processor writes to the log files */
return;
sprintf(buf, "%s%s", All.OutputDir, All.CpuFile);
if(!(FdCPU = fopen(buf, mode)))
{
printf("error in opening file '%s'\n", buf);
endrun(1);
}
#ifdef ADVANCEDCPUSTATISTICS
else
{
if(RestartFlag == 0) /* write the header */
{
fprintf(FdCPU,"# Step ");
fprintf(FdCPU,"Time ");
fprintf(FdCPU,"nCPUs ");
fprintf(FdCPU,"CPU_Total ");
#ifdef DETAILED_CPU
fprintf(FdCPU,"CPU_Leapfrog ");
fprintf(FdCPU,"CPU_Physics ");
fprintf(FdCPU,"CPU_Residual ");
fprintf(FdCPU,"CPU_Accel ");
fprintf(FdCPU,"CPU_Begrun ");
#endif
fprintf(FdCPU,"CPU_Gravity ");
fprintf(FdCPU,"CPU_Hydro ");
#ifdef COOLING
fprintf(FdCPU,"CPU_Cooling ");
#endif
#ifdef SFR
fprintf(FdCPU,"CPU_StarFormation ");
#endif
#ifdef CHIMIE
fprintf(FdCPU,"CPU_Chimie ");
#endif
#ifdef MULTIPHASE
fprintf(FdCPU,"CPU_Sticky ");
#endif
fprintf(FdCPU,"CPU_Domain ");
fprintf(FdCPU,"CPU_Potential ");
fprintf(FdCPU,"CPU_Predict ");
fprintf(FdCPU,"CPU_TimeLine ");
fprintf(FdCPU,"CPU_Snapshot ");
fprintf(FdCPU,"CPU_TreeWalk ");
fprintf(FdCPU,"CPU_TreeConstruction ");
fprintf(FdCPU,"CPU_CommSum ");
fprintf(FdCPU,"CPU_Imbalance ");
fprintf(FdCPU,"CPU_HydCompWalk ");
fprintf(FdCPU,"CPU_HydCommSumm ");
fprintf(FdCPU,"CPU_HydImbalance ");
fprintf(FdCPU,"CPU_EnsureNgb ");
fprintf(FdCPU,"CPU_PM ");
fprintf(FdCPU,"CPU_Peano ");
#ifdef DETAILED_CPU_DOMAIN
fprintf(FdCPU,"CPU_Domain_findExtend ");
fprintf(FdCPU,"CPU_Domain_determineTopTree ");
fprintf(FdCPU,"CPU_Domain_sumCost ");
fprintf(FdCPU,"CPU_Domain_findSplit ");
fprintf(FdCPU,"CPU_Domain_shiftSplit ");
fprintf(FdCPU,"CPU_Domain_countToGo ");
fprintf(FdCPU,"CPU_Domain_exchange ");
#endif
#ifdef DETAILED_CPU_GRAVITY
fprintf(FdCPU,"CPU_Gravity_TreeWalk1 ");
fprintf(FdCPU,"CPU_Gravity_TreeWalk2 ");
fprintf(FdCPU,"CPU_Gravity_CommSum1 ");
fprintf(FdCPU,"CPU_Gravity_CommSum2 ");
fprintf(FdCPU,"CPU_Gravity_Imbalance1 ");
fprintf(FdCPU,"CPU_Gravity_Imbalance2 ");
#endif
/* return */
fprintf(FdCPU,"\n");
fflush(FdCPU);
}
}
#endif
sprintf(buf, "%s%s", All.OutputDir, All.InfoFile);
if(!(FdInfo = fopen(buf, mode)))
{
printf("error in opening file '%s'\n", buf);
endrun(1);
}
sprintf(buf, "%s%s", All.OutputDir, All.LogFile);
if(!(FdLog = fopen(buf, mode)))
{
printf("error in opening file '%s'\n", buf);
endrun(1);
}
sprintf(buf, "%s%s", All.OutputDir, All.EnergyFile);
if(!(FdEnergy = fopen(buf, mode)))
{
printf("error in opening file '%s'\n", buf);
endrun(1);
}
#ifdef ADVANCEDSTATISTICS
else
{
if(RestartFlag == 0) /* write the header */
{
fprintf(FdEnergy,"# Time EnergyInt EnergyPot EnergyKin ");
#ifdef COOLING
fprintf(FdEnergy,"EnergyRadSph ");
#endif
#ifdef AGN_HEATING
fprintf(FdEnergy,"EnergyAGNHeat ");
#endif
#ifdef DISSIPATION_FORCES
fprintf(FdEnergy,"EnergyDissipationForces ");
#endif
#ifdef INTEGRAL_CONSERVING_DISSIPATION
fprintf(FdEnergy,"EnergyICDissipation ");
#endif
#ifdef MULTIPHASE
fprintf(FdEnergy,"EnergyRadSticky ");
#endif
#ifdef FEEDBACK_WIND
fprintf(FdEnergy,"EnergyFeedbackWind ");
#endif
#ifdef BUBBLES
fprintf(FdEnergy,"EnergyBubbles ");
#endif
#ifdef CHIMIE_THERMAL_FEEDBACK
fprintf(FdEnergy,"EnergyThermalFeedback ");
#endif
#ifdef CHIMIE_KINETIC_FEEDBACK
fprintf(FdEnergy,"EnergyKineticFeedback ");
#endif
for (i=0;i<6;i++)
{
fprintf(FdEnergy,"EnergyIntComp%d EnergyPotComp%d EnergyKinComp%d ",i+1,i+1,i+1);
#ifdef COOLING
fprintf(FdEnergy,"EnergyRadSphComp%d ",i+1);
#endif
#ifdef MULTIPHASE
fprintf(FdEnergy,"EnergyRadStickyComp%d ",i+1);
#endif
#ifdef FEEDBACK_WIND
fprintf(FdEnergy,"EnergyFeedbackWindComp%d ",i+1);
#endif
#ifdef BUBBLES
fprintf(FdEnergy,"EnergyBubblesComp%d ",i+1);
#endif
#ifdef CHIMIE_THERMAL_FEEDBACK
fprintf(FdEnergy,"EnergyThermalFeedbackComp%d ",i+1);
#endif
#ifdef CHIMIE_KINETIC_FEEDBACK
fprintf(FdEnergy,"EnergyKineticFeedbackComp%d ",i+1);
#endif
}
for (i=0;i<6;i++)
fprintf(FdEnergy,"MassComp%d ",i+1);
/* return */
fprintf(FdEnergy,"\n");
fflush(FdEnergy);
}
}
#endif
#ifdef SYSTEMSTATISTICS
sprintf(buf, "%s%s", All.OutputDir, All.SystemFile);
if(!(FdSystem = fopen(buf, mode)))
{
printf("error in opening file '%s'\n", buf);
endrun(1);
}
#endif
sprintf(buf, "%s%s", All.OutputDir, All.TimingsFile);
if(!(FdTimings = fopen(buf, mode)))
{
printf("error in opening file '%s'\n", buf);
endrun(1);
}
#ifdef FORCETEST
if(RestartFlag == 0)
{
sprintf(buf, "%s%s", All.OutputDir, "forcetest.txt");
if(!(FdForceTest = fopen(buf, "w")))
{
printf("error in opening file '%s'\n", buf);
endrun(1);
}
fclose(FdForceTest);
}
#endif
#ifdef SFR
sprintf(buf, "%s%s", All.OutputDir, All.SfrFile);
if(!(FdSfr = fopen(buf, mode)))
{
printf("error in opening file '%s'\n", buf);
endrun(1);
}
#endif
#ifdef CHIMIE
sprintf(buf, "%s%s", All.OutputDir, All.ChimieFile);
if(!(FdChimie = fopen(buf, mode)))
{
printf("error in opening file '%s'\n", buf);
endrun(1);
}
#endif
#ifdef MULTIPHASE
sprintf(buf, "%s%s", All.OutputDir, All.PhaseFile);
if(!(FdPhase = fopen(buf, mode)))
{
printf("error in opening file '%s'\n", buf);
endrun(1);
}
sprintf(buf, "%s%s", All.OutputDir, All.StickyFile);
if(!(FdSticky = fopen(buf, mode)))
{
printf("error in opening file '%s'\n", buf);
endrun(1);
}
#endif
#ifdef AGN_ACCRETION
sprintf(buf, "%s%s", All.OutputDir, All.AccretionFile);
if(!(FdAccretion = fopen(buf, mode)))
{
printf("error in opening file '%s'\n", buf);
endrun(1);
}
#endif
#ifdef BONDI_ACCRETION
sprintf(buf, "%s%s", All.OutputDir, All.BondiFile);
if(!(FdBondi = fopen(buf, mode)))
{
printf("error in opening file '%s'\n", buf);
endrun(1);
}
#endif
#ifdef BUBBLES
sprintf(buf, "%s%s", All.OutputDir, All.BubbleFile);
if(!(FdBubble = fopen(buf, mode)))
{
printf("error in opening file '%s'\n", buf);
endrun(1);
}
#endif
#ifdef GAS_ACCRETION
sprintf(buf, "%s%s", All.OutputDir, All.GasAccretionFile);
if(!(FdGasAccretion = fopen(buf, mode)))
{
printf("error in opening file '%s'\n", buf);
endrun(1);
}
#endif
}
/*! This function closes the global log-files.
*/
void close_outputfiles(void)
{
/* for this kind of log, all tasks write its own file */
#ifdef CHIMIE
#ifdef CHIMIE_STATS
fclose(FdChimieStatsSNs);
fclose(FdChimieStatsGas);
#endif
#endif
if(ThisTask != 0) /* only the root processor writes to the log files */
return;
fclose(FdCPU);
fclose(FdInfo);
fclose(FdLog);
fclose(FdEnergy);
#ifdef SYSTEMSTATISTICS
fclose(FdSystem);
#endif
fclose(FdTimings);
#ifdef FORCETEST
fclose(FdForceTest);
#endif
#ifdef SFR
fclose(FdSfr);
#endif
#ifdef CHIMIE
fclose(FdChimie);
#endif
#ifdef MULTIPHASE
fclose(FdPhase);
fclose(FdSticky);
#endif
#ifdef AGN_ACCRETION
fclose(FdAccretion);
#endif
#ifdef BONDI_ACCRETION
fclose(FdBondi);
#endif
#ifdef BUBBLES
fclose(FdBubble);
#endif
#ifdef GAS_ACCRETION
fclose(FdGasAccretion);
#endif
}
/*! This function parses the parameterfile in a simple way. Each paramater
* is defined by a keyword (`tag'), and can be either of type double, int,
* or character string. The routine makes sure that each parameter
* appears exactly once in the parameterfile, otherwise error messages are
* produced that complain about the missing parameters.
*/
void read_parameter_file(char *fname)
{
#define DOUBLE 1
#define STRING 2
#define INT 3
#define MAXTAGS 300
FILE *fd, *fdout;
char buf[200], buf1[200], buf2[200], buf3[400];
int i, j, nt;
int id[MAXTAGS];
void *addr[MAXTAGS];
char tag[MAXTAGS][50];
int errorFlag = 0;
if(sizeof(long long) != 8)
{
if(ThisTask == 0)
printf("\nType `long long' is not 64 bit on this platform. Stopping.\n\n");
endrun(0);
}
if(sizeof(int) != 4)
{
if(ThisTask == 0)
printf("\nType `int' is not 32 bit on this platform. Stopping.\n\n");
endrun(0);
}
if(sizeof(float) != 4)
{
if(ThisTask == 0)
printf("\nType `float' is not 32 bit on this platform. Stopping.\n\n");
endrun(0);
}
if(sizeof(double) != 8)
{
if(ThisTask == 0)
printf("\nType `double' is not 64 bit on this platform. Stopping.\n\n");
endrun(0);
}
if(ThisTask == 0) /* read parameter file on process 0 */
{
nt = 0;
strcpy(tag[nt], "InitCondFile");
addr[nt] = All.InitCondFile;
id[nt++] = STRING;
strcpy(tag[nt], "OutputDir");
addr[nt] = All.OutputDir;
id[nt++] = STRING;
strcpy(tag[nt], "SnapshotFileBase");
addr[nt] = All.SnapshotFileBase;
id[nt++] = STRING;
strcpy(tag[nt], "EnergyFile");
addr[nt] = All.EnergyFile;
id[nt++] = STRING;
#ifdef SYSTEMSTATISTICS
strcpy(tag[nt], "SystemFile");
addr[nt] = All.SystemFile;
id[nt++] = STRING;
#endif
strcpy(tag[nt], "CpuFile");
addr[nt] = All.CpuFile;
id[nt++] = STRING;
#ifdef SFR
strcpy(tag[nt], "SfrFile");
addr[nt] = All.SfrFile;
id[nt++] = STRING;
#endif
#ifdef CHIMIE
strcpy(tag[nt], "ChimieFile");
addr[nt] = All.ChimieFile;
id[nt++] = STRING;
#endif
#ifdef MULTIPHASE
strcpy(tag[nt], "PhaseFile");
addr[nt] = All.PhaseFile;
id[nt++] = STRING;
strcpy(tag[nt], "StickyFile");
addr[nt] = All.StickyFile;
id[nt++] = STRING;
#endif
#ifdef AGN_ACCRETION
strcpy(tag[nt], "AccretionFile");
addr[nt] = All.AccretionFile;
id[nt++] = STRING;
#endif
#ifdef BONDI_ACCRETION
strcpy(tag[nt], "BondiFile");
addr[nt] = All.BondiFile;
id[nt++] = STRING;
#endif
#ifdef BUBBLES
strcpy(tag[nt], "BubbleFile");
addr[nt] = All.BubbleFile;
id[nt++] = STRING;
#endif
#ifdef GAS_ACCRETION
strcpy(tag[nt], "GasAccretionFile");
addr[nt] = All.GasAccretionFile;
id[nt++] = STRING;
#endif
strcpy(tag[nt], "InfoFile");
addr[nt] = All.InfoFile;
id[nt++] = STRING;
strcpy(tag[nt], "LogFile");
addr[nt] = All.LogFile;
id[nt++] = STRING;
strcpy(tag[nt], "TimingsFile");
addr[nt] = All.TimingsFile;
id[nt++] = STRING;
strcpy(tag[nt], "RestartFile");
addr[nt] = All.RestartFile;
id[nt++] = STRING;
strcpy(tag[nt], "ResubmitCommand");
addr[nt] = All.ResubmitCommand;
id[nt++] = STRING;
strcpy(tag[nt], "OutputListFilename");
addr[nt] = All.OutputListFilename;
id[nt++] = STRING;
strcpy(tag[nt], "OutputListOn");
addr[nt] = &All.OutputListOn;
id[nt++] = INT;
strcpy(tag[nt], "Omega0");
addr[nt] = &All.Omega0;
id[nt++] = DOUBLE;
strcpy(tag[nt], "OmegaBaryon");
addr[nt] = &All.OmegaBaryon;
id[nt++] = DOUBLE;
strcpy(tag[nt], "OmegaLambda");
addr[nt] = &All.OmegaLambda;
id[nt++] = DOUBLE;
strcpy(tag[nt], "HubbleParam");
addr[nt] = &All.HubbleParam;
id[nt++] = DOUBLE;
strcpy(tag[nt], "BoxSize");
addr[nt] = &All.BoxSize;
id[nt++] = DOUBLE;
strcpy(tag[nt], "PeriodicBoundariesOn");
addr[nt] = &All.PeriodicBoundariesOn;
id[nt++] = INT;
strcpy(tag[nt], "TimeOfFirstSnapshot");
addr[nt] = &All.TimeOfFirstSnapshot;
id[nt++] = DOUBLE;
strcpy(tag[nt], "CpuTimeBetRestartFile");
addr[nt] = &All.CpuTimeBetRestartFile;
id[nt++] = DOUBLE;
strcpy(tag[nt], "TimeBetStatistics");
addr[nt] = &All.TimeBetStatistics;
id[nt++] = DOUBLE;
strcpy(tag[nt], "TimeBegin");
addr[nt] = &All.TimeBegin;
id[nt++] = DOUBLE;
strcpy(tag[nt], "TimeMax");
addr[nt] = &All.TimeMax;
id[nt++] = DOUBLE;
strcpy(tag[nt], "TimeBetSnapshot");
addr[nt] = &All.TimeBetSnapshot;
id[nt++] = DOUBLE;
strcpy(tag[nt], "UnitVelocity_in_cm_per_s");
addr[nt] = &All.UnitVelocity_in_cm_per_s;
id[nt++] = DOUBLE;
strcpy(tag[nt], "UnitLength_in_cm");
addr[nt] = &All.UnitLength_in_cm;
id[nt++] = DOUBLE;
strcpy(tag[nt], "UnitMass_in_g");
addr[nt] = &All.UnitMass_in_g;
id[nt++] = DOUBLE;
strcpy(tag[nt], "TreeDomainUpdateFrequency");
addr[nt] = &All.TreeDomainUpdateFrequency;
id[nt++] = DOUBLE;
strcpy(tag[nt], "ErrTolIntAccuracy");
addr[nt] = &All.ErrTolIntAccuracy;
id[nt++] = DOUBLE;
strcpy(tag[nt], "ErrTolTheta");
addr[nt] = &All.ErrTolTheta;
id[nt++] = DOUBLE;
strcpy(tag[nt], "ErrTolForceAcc");
addr[nt] = &All.ErrTolForceAcc;
id[nt++] = DOUBLE;
strcpy(tag[nt], "MinGasHsmlFractional");
addr[nt] = &All.MinGasHsmlFractional;
id[nt++] = DOUBLE;
strcpy(tag[nt], "MaxSizeTimestep");
addr[nt] = &All.MaxSizeTimestep;
id[nt++] = DOUBLE;
strcpy(tag[nt], "MinSizeTimestep");
addr[nt] = &All.MinSizeTimestep;
id[nt++] = DOUBLE;
strcpy(tag[nt], "MaxRMSDisplacementFac");
addr[nt] = &All.MaxRMSDisplacementFac;
id[nt++] = DOUBLE;
strcpy(tag[nt], "ArtBulkViscConst");
addr[nt] = &All.ArtBulkViscConst;
id[nt++] = DOUBLE;
#ifdef ART_CONDUCTIVITY
strcpy(tag[nt], "ArtCondConst");
addr[nt] = &All.ArtCondConst;
id[nt++] = DOUBLE;
strcpy(tag[nt], "ArtCondThreshold");
addr[nt] = &All.ArtCondThreshold;
id[nt++] = DOUBLE;
#endif
#if defined(ART_VISCO_MM)|| defined(ART_VISCO_RO) || defined(ART_VISCO_CD)
strcpy(tag[nt], "ArtBulkViscConstMin");
addr[nt] = &All.ArtBulkViscConstMin;
id[nt++] = DOUBLE;
strcpy(tag[nt], "ArtBulkViscConstMax");
addr[nt] = &All.ArtBulkViscConstMax;
id[nt++] = DOUBLE;
strcpy(tag[nt], "ArtBulkViscConstL");
addr[nt] = &All.ArtBulkViscConstL;
id[nt++] = DOUBLE;
#endif
#if METAL_DIFFUSION
strcpy(tag[nt], "MetalDiffusionConst");
addr[nt] = &All.MetalDiffusionConst;
id[nt++] = DOUBLE;
#endif
#ifdef AB_TURB
strcpy(tag[nt], "ST_decay");
addr[nt] = &All.StDecay;
id[nt++] = DOUBLE;
strcpy(tag[nt], "ST_energy");
addr[nt] = &All.StEnergy;
id[nt++] = DOUBLE;
strcpy(tag[nt], "ST_DtFreq");
addr[nt] = &All.StDtFreq;
id[nt++] = DOUBLE;
strcpy(tag[nt], "ST_Kmin");
addr[nt] = &All.StKmin;
id[nt++] = DOUBLE;
strcpy(tag[nt], "ST_Kmax");
addr[nt] = &All.StKmax;
id[nt++] = DOUBLE;
strcpy(tag[nt], "ST_SolWeight");
addr[nt] = &All.StSolWeight;
id[nt++] = DOUBLE;
strcpy(tag[nt], "ST_AmplFac");
addr[nt] = &All.StAmplFac;
id[nt++] = DOUBLE;
strcpy(tag[nt], "ST_SpectForm");
addr[nt] = &All.StSpectForm;
id[nt++] = INT;
strcpy(tag[nt], "ST_Seed");
addr[nt] = &All.StSeed;
id[nt++] = INT;
#endif
#ifdef SYNCHRONIZE_NGB_TIMESTEP
strcpy(tag[nt], "NgbFactorTimestep");
addr[nt] = &All.NgbFactorTimestep;
id[nt++] = INT;
#endif
strcpy(tag[nt], "CourantFac");
addr[nt] = &All.CourantFac;
id[nt++] = DOUBLE;
strcpy(tag[nt], "DesNumNgb");
addr[nt] = &All.DesNumNgb;
id[nt++] = DOUBLE;
strcpy(tag[nt], "MaxNumNgbDeviation");
addr[nt] = &All.MaxNumNgbDeviation;
id[nt++] = DOUBLE;
strcpy(tag[nt], "ComovingIntegrationOn");
addr[nt] = &All.ComovingIntegrationOn;
id[nt++] = INT;
strcpy(tag[nt], "ICFormat");
addr[nt] = &All.ICFormat;
id[nt++] = INT;
strcpy(tag[nt], "SnapFormat");
addr[nt] = &All.SnapFormat;
id[nt++] = INT;
strcpy(tag[nt], "NumFilesPerSnapshot");
addr[nt] = &All.NumFilesPerSnapshot;
id[nt++] = INT;
strcpy(tag[nt], "NumFilesWrittenInParallel");
addr[nt] = &All.NumFilesWrittenInParallel;
id[nt++] = INT;
strcpy(tag[nt], "ResubmitOn");
addr[nt] = &All.ResubmitOn;
id[nt++] = INT;
strcpy(tag[nt], "TypeOfTimestepCriterion");
addr[nt] = &All.TypeOfTimestepCriterion;
id[nt++] = INT;
strcpy(tag[nt], "TypeOfOpeningCriterion");
addr[nt] = &All.TypeOfOpeningCriterion;
id[nt++] = INT;
strcpy(tag[nt], "TimeLimitCPU");
addr[nt] = &All.TimeLimitCPU;
id[nt++] = DOUBLE;
strcpy(tag[nt], "SofteningHalo");
addr[nt] = &All.SofteningHalo;
id[nt++] = DOUBLE;
strcpy(tag[nt], "SofteningDisk");
addr[nt] = &All.SofteningDisk;
id[nt++] = DOUBLE;
strcpy(tag[nt], "SofteningBulge");
addr[nt] = &All.SofteningBulge;
id[nt++] = DOUBLE;
strcpy(tag[nt], "SofteningGas");
addr[nt] = &All.SofteningGas;
id[nt++] = DOUBLE;
strcpy(tag[nt], "SofteningStars");
addr[nt] = &All.SofteningStars;
id[nt++] = DOUBLE;
strcpy(tag[nt], "SofteningBndry");
addr[nt] = &All.SofteningBndry;
id[nt++] = DOUBLE;
strcpy(tag[nt], "SofteningHaloMaxPhys");
addr[nt] = &All.SofteningHaloMaxPhys;
id[nt++] = DOUBLE;
strcpy(tag[nt], "SofteningDiskMaxPhys");
addr[nt] = &All.SofteningDiskMaxPhys;
id[nt++] = DOUBLE;
strcpy(tag[nt], "SofteningBulgeMaxPhys");
addr[nt] = &All.SofteningBulgeMaxPhys;
id[nt++] = DOUBLE;
strcpy(tag[nt], "SofteningGasMaxPhys");
addr[nt] = &All.SofteningGasMaxPhys;
id[nt++] = DOUBLE;
strcpy(tag[nt], "SofteningStarsMaxPhys");
addr[nt] = &All.SofteningStarsMaxPhys;
id[nt++] = DOUBLE;
strcpy(tag[nt], "SofteningBndryMaxPhys");
addr[nt] = &All.SofteningBndryMaxPhys;
id[nt++] = DOUBLE;
strcpy(tag[nt], "BufferSize");
addr[nt] = &All.BufferSize;
id[nt++] = INT;
strcpy(tag[nt], "PartAllocFactor");
addr[nt] = &All.PartAllocFactor;
id[nt++] = DOUBLE;
strcpy(tag[nt], "TreeAllocFactor");
addr[nt] = &All.TreeAllocFactor;
id[nt++] = DOUBLE;
#ifdef SFR
strcpy(tag[nt], "StarsAllocFactor");
addr[nt] = &All.StarsAllocFactor;
id[nt++] = DOUBLE;
#endif
strcpy(tag[nt], "GravityConstantInternal");
addr[nt] = &All.GravityConstantInternal;
id[nt++] = DOUBLE;
strcpy(tag[nt], "InitGasTemp");
addr[nt] = &All.InitGasTemp;
id[nt++] = DOUBLE;
strcpy(tag[nt], "MinGasTemp");
addr[nt] = &All.MinGasTemp;
id[nt++] = DOUBLE;
#ifdef RANDOMSEED_AS_PARAMETER
strcpy(tag[nt], "RandomSeed");
addr[nt] = &All.RandomSeed;
id[nt++] = INT;
#endif
#ifdef COOLING
strcpy(tag[nt], "CoolingFile");
addr[nt] = All.CoolingFile;
id[nt++] = STRING;
#ifdef COOLING_WIERSMA
strcpy(tag[nt], "CoolingDirectory");
addr[nt] = All.CoolingDirectory;
id[nt++] = STRING;
#endif
#ifdef COOLING_GRACKLE
strcpy(tag[nt], "GrackleCloudyTable");
addr[nt] = All.GrackleCloudyTable;
id[nt++] = STRING;
strcpy(tag[nt], "GrackleUVbackground");
addr[nt] = &All.GrackleUVbackground;
id[nt++] = INT;
strcpy(tag[nt], "GrackleRedshift");
addr[nt] = &All.GrackleRedshift;
id[nt++] = DOUBLE;
#endif
strcpy(tag[nt], "CutofCoolingTemperature");
addr[nt] = &All.CutofCoolingTemperature;
id[nt++] = DOUBLE;
strcpy(tag[nt], "InitGasMetallicity");
addr[nt] = &All.InitGasMetallicity;
id[nt++] = DOUBLE;
strcpy(tag[nt], "CoolingType");
addr[nt] = &All.CoolingType;
id[nt++] = DOUBLE;
#endif
#ifdef CHIMIE
strcpy(tag[nt], "ChimieNumberOfParameterFiles");
addr[nt] = &All.ChimieNumberOfParameterFiles;
id[nt++] = INT;
strcpy(tag[nt], "ChimieParameterFile");
addr[nt] = All.ChimieParameterFile;
id[nt++] = STRING;
strcpy(tag[nt], "ChimieSupernovaEnergy");
addr[nt] = &All.ChimieSupernovaEnergy;
id[nt++] = DOUBLE;
strcpy(tag[nt], "ChimieKineticFeedbackFraction");
addr[nt] = &All.ChimieKineticFeedbackFraction;
id[nt++] = DOUBLE;
strcpy(tag[nt], "ChimieWindSpeed");
addr[nt] = &All.ChimieWindSpeed;
id[nt++] = DOUBLE;
strcpy(tag[nt], "ChimieWindTime");
addr[nt] = &All.ChimieWindTime;
id[nt++] = DOUBLE;
strcpy(tag[nt], "ChimieSNIaThermalTime");
addr[nt] = &All.ChimieSNIaThermalTime;
id[nt++] = DOUBLE;
strcpy(tag[nt], "ChimieSNIIThermalTime");
addr[nt] = &All.ChimieSNIIThermalTime;
id[nt++] = DOUBLE;
strcpy(tag[nt], "ChimieMaxSizeTimestep");
addr[nt] = &All.ChimieMaxSizeTimestep;
id[nt++] = DOUBLE;
#ifdef CHIMIE_ONE_SN_ONLY
strcpy(tag[nt], "ChimieOneSNMass");
addr[nt] = &All.ChimieOneSNMass;
id[nt++] = DOUBLE;
#endif
#if CHIMIE_EJECTA_RADIUS == 1
strcpy(tag[nt], "ChimieEjectaRadius");
addr[nt] = &All.ChimieEjectaRadius;
id[nt++] = DOUBLE;
#endif
#endif
#if defined (HEATING_PE)
strcpy(tag[nt], "HeatingPeElectronFraction");
addr[nt] = &All.HeatingPeElectronFraction;
id[nt++] = DOUBLE;
#endif
#if defined (HEATING_PE) || defined (STELLAR_FLUX) || defined (EXTERNAL_FLUX)
strcpy(tag[nt], "HeatingPeSolarEnergyDensity");
addr[nt] = &All.HeatingPeSolarEnergyDensity;
id[nt++] = DOUBLE;
#endif
#if defined (HEATING_PE) || defined (STELLAR_FLUX)
strcpy(tag[nt], "HeatingPeLMRatioGas");
addr[nt] = &All.HeatingPeLMRatioGas;
id[nt++] = DOUBLE;
strcpy(tag[nt], "HeatingPeLMRatioHalo");
addr[nt] = &All.HeatingPeLMRatioHalo;
id[nt++] = DOUBLE;
strcpy(tag[nt], "HeatingPeLMRatioDisk");
addr[nt] = &All.HeatingPeLMRatioDisk;
id[nt++] = DOUBLE;
strcpy(tag[nt], "HeatingPeLMRatioBulge");
addr[nt] = &All.HeatingPeLMRatioBulge;
id[nt++] = DOUBLE;
strcpy(tag[nt], "HeatingPeLMRatioStars");
addr[nt] = &All.HeatingPeLMRatioStars;
id[nt++] = DOUBLE;
strcpy(tag[nt], "HeatingPeLMRatioBndry");
addr[nt] = &All.HeatingPeLMRatioBndry;
id[nt++] = DOUBLE;
#endif
#ifdef EXTERNAL_FLUX
strcpy(tag[nt], "HeatingExternalFLuxEnergyDensity");
addr[nt] = &All.HeatingExternalFLuxEnergyDensity;
id[nt++] = DOUBLE;
#endif
#ifdef MULTIPHASE
strcpy(tag[nt], "CriticalTemperature");
addr[nt] = &All.CriticalTemperature;
id[nt++] = DOUBLE;
strcpy(tag[nt], "CriticalNonCollisionalTemperature");
addr[nt] = &All.CriticalNonCollisionalTemperature;
id[nt++] = DOUBLE;
strcpy(tag[nt], "StickyUseGridForCollisions");
addr[nt] = &All.StickyUseGridForCollisions;
id[nt++] = INT;
strcpy(tag[nt], "StickyTime");
addr[nt] = &All.StickyTime;
id[nt++] = DOUBLE;
strcpy(tag[nt], "StickyCollisionTime");
addr[nt] = &All.StickyCollisionTime;
id[nt++] = DOUBLE;
strcpy(tag[nt], "StickyIdleTime");
addr[nt] = &All.StickyIdleTime;
id[nt++] = DOUBLE;
strcpy(tag[nt], "StickyMinVelocity");
addr[nt] = &All.StickyMinVelocity;
id[nt++] = DOUBLE;
strcpy(tag[nt], "StickyMaxVelocity");
addr[nt] = &All.StickyMaxVelocity;
id[nt++] = DOUBLE;
strcpy(tag[nt], "StickyBetaR");
addr[nt] = &All.StickyBetaR;
id[nt++] = DOUBLE;
strcpy(tag[nt], "StickyBetaT");
addr[nt] = &All.StickyBetaT;
id[nt++] = DOUBLE;
strcpy(tag[nt], "StickyGridNx");
addr[nt] = &All.StickyGridNx;
id[nt++] = INT;
strcpy(tag[nt], "StickyGridNy");
addr[nt] = &All.StickyGridNy;
id[nt++] = INT;
strcpy(tag[nt], "StickyGridNz");
addr[nt] = &All.StickyGridNz;
id[nt++] = INT;
strcpy(tag[nt], "StickyGridXmin");
addr[nt] = &All.StickyGridXmin;
id[nt++] = DOUBLE;
strcpy(tag[nt], "StickyGridXmax");
addr[nt] = &All.StickyGridXmax;
id[nt++] = DOUBLE;
strcpy(tag[nt], "StickyGridYmin");
addr[nt] = &All.StickyGridYmin;
id[nt++] = DOUBLE;
strcpy(tag[nt], "StickyGridYmax");
addr[nt] = &All.StickyGridYmax;
id[nt++] = DOUBLE;
strcpy(tag[nt], "StickyGridZmin");
addr[nt] = &All.StickyGridZmin;
id[nt++] = DOUBLE;
strcpy(tag[nt], "StickyGridZmax");
addr[nt] = &All.StickyGridZmax;
id[nt++] = DOUBLE;
strcpy(tag[nt], "StickyDensity");
addr[nt] = &All.StickyDensity;
id[nt++] = DOUBLE;
strcpy(tag[nt], "StickyDensityPower");
addr[nt] = &All.StickyDensityPower;
id[nt++] = DOUBLE;
strcpy(tag[nt], "StickyRsphFact");
addr[nt] = &All.StickyRsphFact;
id[nt++] = DOUBLE;
#ifdef COLDGAS_CYCLE
strcpy(tag[nt], "ColdGasCycleTransitionTime");
addr[nt] = &All.ColdGasCycleTransitionTime;
id[nt++] = DOUBLE;
strcpy(tag[nt], "ColdGasCycleTransitionParameter");
addr[nt] = &All.ColdGasCycleTransitionParameter;
id[nt++] = DOUBLE;
#endif
#endif
#ifdef OUTERPOTENTIAL
#ifdef NFW
strcpy(tag[nt], "HaloConcentration");
addr[nt] = &All.HaloConcentration;
id[nt++] = DOUBLE;
strcpy(tag[nt], "HaloMass");
addr[nt] = &All.HaloMass;
id[nt++] = DOUBLE;
strcpy(tag[nt], "GasMassFraction");
addr[nt] = &All.GasMassFraction;
id[nt++] = DOUBLE;
#endif
#ifdef PLUMMER
strcpy(tag[nt], "PlummerMass");
addr[nt] = &All.PlummerMass;
id[nt++] = DOUBLE;
strcpy(tag[nt], "PlummerSoftenning");
addr[nt] = &All.PlummerSoftenning;
id[nt++] = DOUBLE;
#endif
#ifdef MIYAMOTONAGAI
strcpy(tag[nt], "MiyamotoNagaiMass");
addr[nt] = &All.MiyamotoNagaiMass;
id[nt++] = DOUBLE;
strcpy(tag[nt], "MiyamotoNagaiHr");
addr[nt] = &All.MiyamotoNagaiHr;
id[nt++] = DOUBLE;
strcpy(tag[nt], "MiyamotoNagaiHz");
addr[nt] = &All.MiyamotoNagaiHz;
id[nt++] = DOUBLE;
#endif
#ifdef PISOTHERM
strcpy(tag[nt], "Rho0");
addr[nt] = &All.Rho0;
id[nt++] = DOUBLE;
strcpy(tag[nt], "Rc");
addr[nt] = &All.Rc;
id[nt++] = DOUBLE;
strcpy(tag[nt], "GasMassFraction");
addr[nt] = &All.GasMassFraction;
id[nt++] = DOUBLE;
#endif
#ifdef CORIOLIS
strcpy(tag[nt], "CoriolisOmegaX0");
addr[nt] = &All.CoriolisOmegaX0;
id[nt++] = DOUBLE;
strcpy(tag[nt], "CoriolisOmegaY0");
addr[nt] = &All.CoriolisOmegaY0;
id[nt++] = DOUBLE;
strcpy(tag[nt], "CoriolisOmegaZ0");
addr[nt] = &All.CoriolisOmegaZ0;
id[nt++] = DOUBLE;
#endif
#endif
#ifdef SFR
strcpy(tag[nt], "StarFormationNStarsFromGas");
addr[nt] = &All.StarFormationNStarsFromGas;
id[nt++] = INT;
strcpy(tag[nt], "StarFormationMgMsFraction");
addr[nt] = &All.StarFormationMgMsFraction;
id[nt++] = DOUBLE;
strcpy(tag[nt], "StarFormationStarMass");
addr[nt] = &All.StarFormationStarMass;
id[nt++] = DOUBLE;
strcpy(tag[nt], "StarFormationType");
addr[nt] = &All.StarFormationType;
id[nt++] = INT;
strcpy(tag[nt], "StarFormationCstar");
addr[nt] = &All.StarFormationCstar;
id[nt++] = DOUBLE;
strcpy(tag[nt], "StarFormationTime");
addr[nt] = &All.StarFormationTime;
id[nt++] = DOUBLE;
strcpy(tag[nt], "StarFormationDensity");
addr[nt] = &All.StarFormationDensity;
id[nt++] = DOUBLE;
strcpy(tag[nt], "StarFormationTemperature");
addr[nt] = &All.StarFormationTemperature;
id[nt++] = DOUBLE;
#endif
#ifdef FOF
strcpy(tag[nt], "FoF_Density");
addr[nt] = &All.FoF_Density;
id[nt++] = DOUBLE;
strcpy(tag[nt], "FoF_ThresholdDensityFactor");
addr[nt] = &All.FoF_ThresholdDensityFactor;
id[nt++] = DOUBLE;
strcpy(tag[nt], "FoF_MinHeadDensityFactor");
addr[nt] = &All.FoF_MinHeadDensityFactor;
id[nt++] = DOUBLE;
strcpy(tag[nt], "FoF_MinGroupMembers");
addr[nt] = &All.FoF_MinGroupMembers;
id[nt++] = INT;
strcpy(tag[nt], "FoF_MinGroupMass");
addr[nt] = &All.FoF_MinGroupMass;
id[nt++] = DOUBLE;
strcpy(tag[nt], "FoF_HsmlSearchRadiusFactor");
addr[nt] = &All.FoF_HsmlSearchRadiusFactor;
id[nt++] = DOUBLE;
strcpy(tag[nt], "FoF_HsmlMaxDistFactor");
addr[nt] = &All.FoF_HsmlMaxDistFactor;
id[nt++] = DOUBLE;
strcpy(tag[nt], "FoF_TimeBetFoF");
addr[nt] = &All.FoF_TimeBetFoF;
id[nt++] = DOUBLE;
strcpy(tag[nt], "FoF_SnapshotFileBase");
addr[nt] = All.FoF_SnapshotFileBase;
id[nt++] = STRING;
+
+ strcpy(tag[nt], "FoF_StarFormationType");
+ addr[nt] = &All.FoF_StarFormationType;
+ id[nt++] = INT;
#endif
#ifdef FEEDBACK
strcpy(tag[nt], "SupernovaEgySpecPerMassUnit");
addr[nt] = &All.SupernovaEgySpecPerMassUnit;
id[nt++] = DOUBLE;
strcpy(tag[nt], "SupernovaFractionInEgyKin");
addr[nt] = &All.SupernovaFractionInEgyKin;
id[nt++] = DOUBLE;
strcpy(tag[nt], "SupernovaTime");
addr[nt] = &All.SupernovaTime;
id[nt++] = DOUBLE;
#endif
#ifdef FEEDBACK_WIND
strcpy(tag[nt], "SupernovaWindEgySpecPerMassUnit");
addr[nt] = &All.SupernovaWindEgySpecPerMassUnit;
id[nt++] = DOUBLE;
strcpy(tag[nt], "SupernovaWindFractionInEgyKin");
addr[nt] = &All.SupernovaWindFractionInEgyKin;
id[nt++] = DOUBLE;
strcpy(tag[nt], "SupernovaWindParameter");
addr[nt] = &All.SupernovaWindParameter;
id[nt++] = DOUBLE;
strcpy(tag[nt], "SupernovaWindIntAccuracy");
addr[nt] = &All.SupernovaWindIntAccuracy;
id[nt++] = DOUBLE;
#endif
#ifdef AGN_ACCRETION
strcpy(tag[nt], "TimeBetAccretion");
addr[nt] = &All.TimeBetAccretion;
id[nt++] = DOUBLE;
strcpy(tag[nt], "AccretionRadius");
addr[nt] = &All.AccretionRadius;
id[nt++] = DOUBLE;
strcpy(tag[nt], "AGNFactor");
addr[nt] = &All.AGNFactor;
id[nt++] = DOUBLE;
strcpy(tag[nt], "MinMTotInRa");
addr[nt] = &All.MinMTotInRa;
id[nt++] = DOUBLE;
#endif
#ifdef BUBBLES
strcpy(tag[nt], "BubblesDelta");
addr[nt] = &All.BubblesDelta;
id[nt++] = DOUBLE;
strcpy(tag[nt], "BubblesAlpha");
addr[nt] = &All.BubblesAlpha;
id[nt++] = DOUBLE;
strcpy(tag[nt], "BubblesRadiusFactor");
addr[nt] = &All.BubblesRadiusFactor;
id[nt++] = DOUBLE;
strcpy(tag[nt], "BubblesInitFile");
addr[nt] = All.BubblesInitFile;
id[nt++] = STRING;
#endif
#ifdef AGN_HEATING
strcpy(tag[nt], "AGNHeatingPower");
addr[nt] = &All.AGNHeatingPower;
id[nt++] = DOUBLE;
strcpy(tag[nt], "AGNHeatingRmax");
addr[nt] = &All.AGNHeatingRmax;
id[nt++] = DOUBLE;
#endif
#ifdef BONDI_ACCRETION
strcpy(tag[nt], "BondiEfficiency");
addr[nt] = &All.BondiEfficiency;
id[nt++] = DOUBLE;
strcpy(tag[nt], "BondiBlackHoleMass");
addr[nt] = &All.BondiBlackHoleMass;
id[nt++] = DOUBLE;
strcpy(tag[nt], "BondiHsmlFactor");
addr[nt] = &All.BondiHsmlFactor;
id[nt++] = DOUBLE;
strcpy(tag[nt], "BondiTimeBet");
addr[nt] = &All.BondiTimeBet;
id[nt++] = DOUBLE;
#endif
if((fd = fopen(fname, "r")))
{
sprintf(buf, "%s%s", fname, "-usedvalues");
if(!(fdout = fopen(buf, "w")))
{
printf("error opening file '%s' \n", buf);
errorFlag = 1;
}
else
{
while(!feof(fd))
{
*buf = 0;
fgets(buf, 200, fd);
if(sscanf(buf, "%s%s%s", buf1, buf2, buf3) < 2)
continue;
if(buf1[0] == '%')
continue;
for(i = 0, j = -1; i < nt; i++)
if(strcmp(buf1, tag[i]) == 0)
{
j = i;
tag[i][0] = 0;
break;
}
if(j >= 0)
{
switch (id[j])
{
case DOUBLE:
*((double *) addr[j]) = atof(buf2);
fprintf(fdout, "%-35s%g\n", buf1, *((double *) addr[j]));
break;
case STRING:
strcpy(addr[j], buf2);
fprintf(fdout, "%-35s%s\n", buf1, buf2);
break;
case INT:
*((int *) addr[j]) = atoi(buf2);
fprintf(fdout, "%-35s%d\n", buf1, *((int *) addr[j]));
break;
}
}
else
{
fprintf(stdout, "Error in file %s: Tag '%s' not allowed or multiple defined.\n",
fname, buf1);
errorFlag = 1;
}
}
fclose(fd);
fclose(fdout);
i = strlen(All.OutputDir);
if(i > 0)
if(All.OutputDir[i - 1] != '/')
strcat(All.OutputDir, "/");
/* copy parameters-usedvalues file*/
sprintf(buf1, "%s%s", fname, "-usedvalues");
sprintf(buf2, "%s%s", All.OutputDir, "parameters-usedvalues");
fd = fopen(buf1,"r");
fdout = fopen(buf2,"w");
while(1)
{
fgets(buf, 200, fd);
if (feof(fd)) break;
fprintf(fdout, buf, 200);
}
fclose(fd);
fclose(fdout);
}
}
else
{
printf("\nParameter file %s not found.\n\n", fname);
errorFlag = 2;
}
if(errorFlag != 2)
for(i = 0; i < nt; i++)
{
if(*tag[i])
{
printf("Error. I miss a value for tag '%s' in parameter file '%s'.\n", tag[i], fname);
errorFlag = 1;
}
}
if(All.OutputListOn && errorFlag == 0)
errorFlag += read_outputlist(All.OutputListFilename);
else
All.OutputListLength = 0;
}
MPI_Bcast(&errorFlag, 1, MPI_INT, 0, MPI_COMM_WORLD);
if(errorFlag)
{
MPI_Finalize();
exit(0);
}
/* now communicate the relevant parameters to the other processes */
MPI_Bcast(&All, sizeof(struct global_data_all_processes), MPI_BYTE, 0, MPI_COMM_WORLD);
if(All.NumFilesWrittenInParallel < 1)
{
if(ThisTask == 0)
printf("NumFilesWrittenInParallel MUST be at least 1\n");
endrun(0);
}
if(All.NumFilesWrittenInParallel > NTask)
{
if(ThisTask == 0)
printf("NumFilesWrittenInParallel MUST be smaller than number of processors\n");
endrun(0);
}
#ifdef PERIODIC
if(All.PeriodicBoundariesOn == 0)
{
if(ThisTask == 0)
{
printf("Code was compiled with periodic boundary conditions switched on.\n");
printf("You must set `PeriodicBoundariesOn=1', or recompile the code.\n");
}
endrun(0);
}
#else
if(All.PeriodicBoundariesOn == 1)
{
if(ThisTask == 0)
{
printf("Code was compiled with periodic boundary conditions switched off.\n");
printf("You must set `PeriodicBoundariesOn=0', or recompile the code.\n");
}
endrun(0);
}
#endif
if(All.TypeOfTimestepCriterion >= 1)
{
if(ThisTask == 0)
{
printf("The specified timestep criterion\n");
printf("is not valid\n");
}
endrun(0);
}
#if defined(LONG_X) || defined(LONG_Y) || defined(LONG_Z)
#ifndef NOGRAVITY
if(ThisTask == 0)
{
printf("Code was compiled with LONG_X/Y/Z, but not with NOGRAVITY.\n");
printf("Stretched periodic boxes are not implemented for gravity yet.\n");
}
endrun(0);
#endif
#endif
#ifdef SYNCHRONIZE_NGB_TIMESTEP
int ti = 1;
while((ti != All.NgbFactorTimestep) && (ti!=TIMEBASE))
ti <<= 1;
if (ti==TIMEBASE)
{
if(ThisTask == 0)
{
printf("\nThe parameter NgbFactorTimestep must be a power of two\n");
printf("NgbFactorTimestep=%d is not valid\n\n",All.NgbFactorTimestep);
endrun(7);
}
}
#endif
#undef DOUBLE
#undef STRING
#undef INT
#undef MAXTAGS
}
/*! this function reads a table with a list of desired output times. The
* table does not have to be ordered in any way, but may not contain more
* than MAXLEN_OUTPUTLIST entries.
*/
int read_outputlist(char *fname)
{
FILE *fd;
if(!(fd = fopen(fname, "r")))
{
printf("can't read output list in file '%s'\n", fname);
return 1;
}
All.OutputListLength = 0;
do
{
if(fscanf(fd, " %lg ", &All.OutputListTimes[All.OutputListLength]) == 1)
All.OutputListLength++;
else
break;
}
while(All.OutputListLength < MAXLEN_OUTPUTLIST);
fclose(fd);
printf("\nfound %d times in output-list.\n", All.OutputListLength);
return 0;
}
/*! If a restart from restart-files is carried out where the TimeMax
* variable is increased, then the integer timeline needs to be
* adjusted. The approach taken here is to reduce the resolution of the
* integer timeline by factors of 2 until the new final time can be
* reached within TIMEBASE.
*/
void readjust_timebase(double TimeMax_old, double TimeMax_new)
{
int i;
long long ti_end;
if(ThisTask == 0)
{
printf("\nAll.TimeMax has been changed in the parameterfile\n");
printf("Need to adjust integer timeline\n\n\n");
}
if(TimeMax_new < TimeMax_old)
{
if(ThisTask == 0)
printf("\nIt is not allowed to reduce All.TimeMax\n\n");
endrun(556);
}
if(All.ComovingIntegrationOn)
ti_end = log(TimeMax_new / All.TimeBegin) / All.Timebase_interval;
else
ti_end = (TimeMax_new - All.TimeBegin) / All.Timebase_interval;
while(ti_end > TIMEBASE)
{
All.Timebase_interval *= 2.0;
ti_end /= 2;
All.Ti_Current /= 2;
#ifdef PMGRID
All.PM_Ti_begstep /= 2;
All.PM_Ti_endstep /= 2;
#endif
for(i = 0; i < NumPart; i++)
{
P[i].Ti_begstep /= 2;
P[i].Ti_endstep /= 2;
}
}
All.TimeMax = TimeMax_new;
}
diff --git a/src/fof.c b/src/fof.c
index 7af2147..4613c4f 100644
--- a/src/fof.c
+++ b/src/fof.c
@@ -1,3325 +1,3331 @@
#include <stdio.h>
#include <stdlib.h>
#include <string.h>
#include <math.h>
#include <mpi.h>
#include <gsl/gsl_math.h>
#include "allvars.h"
#include "proto.h"
#ifdef FOF
#ifdef PERIODIC
static double boxSize, boxHalf;
#ifdef LONG_X
static double boxSize_X, boxHalf_X;
#else
#define boxSize_X boxSize
#define boxHalf_X boxHalf
#endif
#ifdef LONG_Y
static double boxSize_Y, boxHalf_Y;
#else
#define boxSize_Y boxSize
#define boxHalf_Y boxHalf
#endif
#ifdef LONG_Z
static double boxSize_Z, boxHalf_Z;
#else
#define boxSize_Z boxSize
#define boxHalf_Z boxHalf
#endif
#endif
#define MAX_STARS_PER_PART 100
static int NpHead;
static int NHead;
static double a3;
static struct fof_phdata
{
int index;
int prev;
int cpuprev;
FLOAT density;
}
*fofd;
static struct fof_topgroups_exchange
{
int Head; /*!< head index */
int Task; /*!< task hosting the true head */
}
*TopTSfrGroups,*TopTSfrGroups_local;
void fof(void)
{
/* check if it is time to do an fof */
if((All.Time - All.FoF_TimeLastFoF) >= All.FoF_TimeBetFoF)
{
if(ThisTask == 0)
{
printf("FoF: Starting...\n");
printf("FoF: last FoF=%g\n",All.FoF_TimeLastFoF);
fflush(stdout);
}
fof_init();
//fof_write_particles_id_and_indicies();
fof_find_densest_neighbour();
fof_find_local_heads();
fof_link_particles_to_local_head();
fof_clean_local_groups();
fof_compute_local_tails();
//printf("(%d) NHead=%08d NpHead=%08d\n",ThisTask,NHead,NpHead);
fof_regroup_pseudo_heads();
//fof_group_info();
//printf("(%d) NHead=%08d NpHead=%08d\n",ThisTask,NHead,NpHead);
//fof_write_local_groups();
fof_send_and_link_pseudo_heads();
fof_regroup_exported_pseudo_heads();
//fof_write_all_groups();
fof_allocate_groups();
fof_compute_groups_properties();
#ifdef SFR
//fof_star_formation();
fof_star_formation_and_IMF_sampling();
#endif
//fof_write_groups_properties();
fof_free_groups();
All.FoF_TimeLastFoF += All.FoF_TimeBetFoF;
if(ThisTask == 0)
{
printf("FoF: next FoF=%g \n",All.FoF_TimeLastFoF);
printf("FoF: done.\n");
fflush(stdout);
}
}
}
void fof_init(void)
{
#ifdef PERIODIC
boxSize = All.BoxSize;
boxHalf = 0.5 * All.BoxSize;
#ifdef LONG_X
boxHalf_X = boxHalf * LONG_X;
boxSize_X = boxSize * LONG_X;
#endif
#ifdef LONG_Y
boxHalf_Y = boxHalf * LONG_Y;
boxSize_Y = boxSize * LONG_Y;
#endif
#ifdef LONG_Z
boxHalf_Z = boxHalf * LONG_Z;
boxSize_Z = boxSize * LONG_Z;
#endif
#endif
if(All.ComovingIntegrationOn)
{
a3 = All.Time * All.Time * All.Time;
}
else
{
a3 = 1;
}
}
void fof_find_densest_neighbour(void)
{
if(ThisTask == 0)
{
printf("FoF: find densest neighbour\n");
fflush(stdout);
}
long long ntot, ntotleft;
int i, j, k, n, ngrp, maxfill, source, ndone;
int *nbuffer, *noffset, *nsend_local, *nsend, *numlist, *ndonelist;
int level, sendTask, recvTask, nexport, place;
double tstart, tend, sumt, sumcomm;
MPI_Status status;
/*
for(n = 0, NumSphUpdate = 0; n < N_gas; n++)
{
if(P[n].Type == 0)
{
SphP[n].FOF_Head=n;
SphP[n].FOF_DensMax=-1;
SphP[n].FOF_CPUHead=-1;
}
}
N_gas=10;
*/
//compute_potential();
/* `NumSphUpdate' gives the number of particles on this processor that want a force update */
for(n = 0, NumSphUpdate = 0; n < N_gas; n++)
{
if ( (P[n].Type == 0) && (SphP[n].Density>All.FoF_ThresholdDensity) )
{
NumSphUpdate++;
SphP[n].FOF_Len=1;
SphP[n].FOF_Head=-1;
SphP[n].FOF_Tail=-1;
SphP[n].FOF_Next=-1;
SphP[n].FOF_Prev=-1;
SphP[n].FOF_CPUHead=-1;
SphP[n].FOF_CPUTail=-1;
SphP[n].FOF_CPUNext=-1;
SphP[n].FOF_CPUPrev=-1;
SphP[n].FOF_DensMax=-1;
SphP[n].FOF_Done=0;
}
}
numlist = malloc(NTask * sizeof(int) * NTask);
MPI_Allgather(&NumSphUpdate, 1, MPI_INT, numlist, 1, MPI_INT, MPI_COMM_WORLD);
for(i = 0, ntot = 0; i < NTask; i++)
ntot += numlist[i];
free(numlist);
noffset = malloc(sizeof(int) * NTask); /* offsets of bunches in common list */
nbuffer = malloc(sizeof(int) * NTask);
nsend_local = malloc(sizeof(int) * NTask);
nsend = malloc(sizeof(int) * NTask * NTask);
ndonelist = malloc(sizeof(int) * NTask);
i = 0; /* first particle for this task */
ntotleft = ntot; /* particles left for all tasks together */
while(ntotleft > 0)
{
for(j = 0; j < NTask; j++)
nsend_local[j] = 0;
/* do local particles and prepare export list */
for(nexport = 0, ndone = 0; i < N_gas && nexport < All.BunchSizeFOF - NTask; i++)
if((P[i].Type == 0) && (SphP[i].Density>All.FoF_ThresholdDensity))
{
ndone++;
for(j = 0; j < NTask; j++)
Exportflag[j] = 0;
fof_evaluate(i, 0);
for(j = 0; j < NTask; j++)
{
if(Exportflag[j])
{
for(k = 0; k < 3; k++)
{
FOFDataIn[nexport].Pos[k] = P[i].Pos[k];
}
FOFDataIn[nexport].Hsml = SphP[i].Hsml;
FOFDataIn[nexport].FOF_Prev = SphP[i].FOF_Prev;
FOFDataIn[nexport].FOF_DensMax = SphP[i].FOF_DensMax;
FOFDataIn[nexport].FOF_CPUPrev = SphP[i].FOF_CPUPrev;
FOFDataIn[nexport].Index = i;
FOFDataIn[nexport].Task = j;
nexport++;
nsend_local[j]++;
}
}
}
qsort(FOFDataIn, nexport, sizeof(struct FOFdata_in), fof_compare_key);
for(j = 1, noffset[0] = 0; j < NTask; j++)
noffset[j] = noffset[j - 1] + nsend_local[j - 1];
MPI_Allgather(nsend_local, NTask, MPI_INT, nsend, NTask, MPI_INT, MPI_COMM_WORLD);
/* now do the particles that need to be exported */
for(level = 1; level < (1 << PTask); level++)
{
for(j = 0; j < NTask; j++)
nbuffer[j] = 0;
for(ngrp = level; ngrp < (1 << PTask); ngrp++)
{
maxfill = 0;
for(j = 0; j < NTask; j++)
{
if((j ^ ngrp) < NTask)
if(maxfill < nbuffer[j] + nsend[(j ^ ngrp) * NTask + j])
maxfill = nbuffer[j] + nsend[(j ^ ngrp) * NTask + j];
}
if(maxfill >= All.BunchSizeFOF)
break;
sendTask = ThisTask;
recvTask = ThisTask ^ ngrp;
if(recvTask < NTask)
{
if(nsend[ThisTask * NTask + recvTask] > 0 || nsend[recvTask * NTask + ThisTask] > 0)
{
/* get the particles */
MPI_Sendrecv(&FOFDataIn[noffset[recvTask]],
nsend_local[recvTask] * sizeof(struct FOFdata_in), MPI_BYTE,
recvTask, TAG_HYDRO_A,
&FOFDataGet[nbuffer[ThisTask]],
nsend[recvTask * NTask + ThisTask] * sizeof(struct FOFdata_in), MPI_BYTE,
recvTask, TAG_HYDRO_A, MPI_COMM_WORLD, &status);
}
}
for(j = 0; j < NTask; j++)
if((j ^ ngrp) < NTask)
nbuffer[j] += nsend[(j ^ ngrp) * NTask + j];
}
/* now do the imported particles */
for(j = 0; j < nbuffer[ThisTask]; j++)
fof_evaluate(j, 1);
/* do a block to measure imbalance */
MPI_Barrier(MPI_COMM_WORLD);
/* get the result */
for(j = 0; j < NTask; j++)
nbuffer[j] = 0;
for(ngrp = level; ngrp < (1 << PTask); ngrp++)
{
maxfill = 0;
for(j = 0; j < NTask; j++)
{
if((j ^ ngrp) < NTask)
if(maxfill < nbuffer[j] + nsend[(j ^ ngrp) * NTask + j])
maxfill = nbuffer[j] + nsend[(j ^ ngrp) * NTask + j];
}
if(maxfill >= All.BunchSizeFOF)
break;
sendTask = ThisTask;
recvTask = ThisTask ^ ngrp;
if(recvTask < NTask)
{
if(nsend[ThisTask * NTask + recvTask] > 0 || nsend[recvTask * NTask + ThisTask] > 0)
{
/* send the results */
MPI_Sendrecv(&FOFDataResult[nbuffer[ThisTask]],
nsend[recvTask * NTask + ThisTask] * sizeof(struct FOFdata_out),
MPI_BYTE, recvTask, TAG_HYDRO_B,
&FOFDataPartialResult[noffset[recvTask]],
nsend_local[recvTask] * sizeof(struct FOFdata_out),
MPI_BYTE, recvTask, TAG_HYDRO_B, MPI_COMM_WORLD, &status);
/* add the result to the particles */
for(j = 0; j < nsend_local[recvTask]; j++)
{
source = j + noffset[recvTask];
place = FOFDataIn[source].Index;
if (FOFDataPartialResult[source].FOF_DensMax>SphP[place].FOF_DensMax)
{
SphP[place].FOF_DensMax = FOFDataPartialResult[source].FOF_DensMax;
SphP[place].FOF_Prev = FOFDataPartialResult[source].FOF_Prev;
SphP[place].FOF_CPUPrev = FOFDataPartialResult[source].FOF_CPUPrev;
}
}
}
}
for(j = 0; j < NTask; j++)
if((j ^ ngrp) < NTask)
nbuffer[j] += nsend[(j ^ ngrp) * NTask + j];
}
level = ngrp - 1;
}
MPI_Allgather(&ndone, 1, MPI_INT, ndonelist, 1, MPI_INT, MPI_COMM_WORLD);
for(j = 0; j < NTask; j++)
ntotleft -= ndonelist[j];
}
free(ndonelist);
free(nsend);
free(nsend_local);
free(nbuffer);
free(noffset);
}
/*! This function is the 'core' of the FOF computation.
*
* For each particle, we find its densest neighboring particle
* and store its index and cpu where its reside in the variables
*
* FOF_Prev = j;
* FOF_CPUPrev = ThisTask;
*
*/
void fof_evaluate(int target, int mode)
{
int j, n, startnode, numngb;
FLOAT *pos;
FLOAT h_i;
int phase=0;
double dx, dy, dz;
double r2, h2;
int FOF_Prev;
FLOAT FOF_DensMax;
int FOF_CPUPrev;
int id;
if(mode == 0)
{
pos = P[target].Pos;
h_i = SphP[target].Hsml;
FOF_Prev = SphP[target].FOF_Prev;
FOF_DensMax = SphP[target].FOF_DensMax;
FOF_CPUPrev = SphP[target].FOF_CPUPrev;
id = P[target].ID;
}
else
{
pos = FOFDataGet[target].Pos;
h_i = FOFDataGet[target].Hsml;
FOF_Prev = FOFDataGet[target].FOF_Prev;
FOF_DensMax = FOFDataGet[target].FOF_DensMax;
FOF_CPUPrev = FOFDataGet[target].FOF_CPUPrev;
id = FOFDataGet[target].ID;
}
h_i = h_i*All.FoF_HsmlSearchRadiusFactor;
h2 = h_i*h_i;
/* Now start the actual SPH computation for this particle */
startnode = All.MaxPart;
do
{
numngb = ngb_treefind_variable(&pos[0], h_i, phase, &startnode);
for(n = 0; n < numngb; n++)
{
j = Ngblist[n];
dx = pos[0] - P[j].Pos[0];
dy = pos[1] - P[j].Pos[1];
dz = pos[2] - P[j].Pos[2];
#ifdef PERIODIC /* find the closest image in the given box size */
if(dx > boxHalf_X)
dx -= boxSize_X;
if(dx < -boxHalf_X)
dx += boxSize_X;
if(dy > boxHalf_Y)
dy -= boxSize_Y;
if(dy < -boxHalf_Y)
dy += boxSize_Y;
if(dz > boxHalf_Z)
dz -= boxSize_Z;
if(dz < -boxHalf_Z)
dz += boxSize_Z;
#endif
r2 = dx * dx + dy * dy + dz * dz;
if (r2 < h2)
{
if (SphP[j].Density>FOF_DensMax)
{
FOF_DensMax = SphP[j].Density;
FOF_Prev = j;
FOF_CPUPrev = ThisTask;
}
}
}
}
while(startnode >= 0);
/* Now collect the result at the right place */
if(mode == 0)
{
SphP[target].FOF_DensMax = FOF_DensMax;
SphP[target].FOF_Prev = FOF_Prev;
SphP[target].FOF_CPUPrev = FOF_CPUPrev;
}
else
{
FOFDataResult[target].FOF_DensMax = FOF_DensMax;
FOFDataResult[target].FOF_Prev = FOF_Prev;
FOFDataResult[target].FOF_CPUPrev = FOF_CPUPrev;
}
}
/*! Compute the number of true head and pseudo head
*
* A true head is a particle for which the densest neighboring particle
* is itself (residing in the same cpu).
*
* (SphP[i].FOF_Prev==i) && (SphP[i].FOF_CPUPrev==ThisTask)
*
* -> SphP[i].FOF_Head = i;
* -> SphP[i].FOF_CPUHead = ThisTask;
*
* A pseudo head is a particle for which the densest neighboring particle
* is on another CPU
*
* SphP[i].FOF_CPUPrev!=ThisTask
*
* -> SphP[i].FOF_Head = i;
* -> SphP[i].FOF_CPUHead = SphP[i].FOF_CPUPrev;
*
*
* New definitions FROM HERE:
*
* a head is : SphP[i].FOF_Head==i
* a true head is : (SphP[i].FOF_Head==i) && (SphP[i].FOF_CPUHead==ThisTask)
* a pseudo head is : (SphP[i].FOF_Head==i) && (SphP[i].FOF_CPUHead!=ThisTask)
*
*/
void fof_find_local_heads(void)
{
int i;
NHead=0;
NpHead=0;
for(i = 0; i < N_gas; i++)
if ( (P[i].Type == 0) && (SphP[i].Density>All.FoF_ThresholdDensity) )
{
if ( (SphP[i].FOF_Prev==i) && (SphP[i].FOF_CPUPrev==ThisTask) ) /* a true head */
{
SphP[i].FOF_Head = i;
SphP[i].FOF_CPUHead = ThisTask;
NHead++;
}
if ( (SphP[i].FOF_CPUPrev!=ThisTask) && (SphP[i].FOF_CPUPrev>=0) ) /* if paticles needs to be exported */
{
SphP[i].FOF_Head = i; /* assume these particles to be (local) head */
SphP[i].FOF_CPUHead = SphP[i].FOF_CPUPrev;
NpHead++;
}
}
else
{
SphP[i].FOF_Head = -1;
SphP[i].FOF_Prev = -1;
}
}
/*! Link each particle to a head
*
*
*/
void fof_link_particles_to_local_head(void)
{
int i;
for(i = 0; i < N_gas; i++)
if ( (P[i].Type == 0) && (SphP[i].Density>All.FoF_ThresholdDensity) )
{
fof_link_to_local_head(i);
}
}
/*! Link each particle to a head
*
* Each particle i try to find recursively
* a particle that is a head.
*
* The variable SphP[i].FOF_Next is used here
* to link particles with their descendents.
*
*/
void fof_link_to_local_head(int i)
{
/*
FOF_Prev==-1 : dead end
FOF_Prev==i : head particle
FOF_Head==i : head particle
FOF_Next==-1 : particle at the queue
*/
int k;
int n;
double dx,dy,dz,r2;
if (SphP[i].FOF_Head!=-1) /* the particle is already in a list */
return;
if (SphP[i].FOF_Prev==-1) /* mark it as a dead end */
return;
/* some physical restrictions */
if (SphP[i].Density<All.FoF_ThresholdDensity)
{
SphP[i].FOF_Prev==-1; /* mark it as a dead end */
SphP[i].FOF_Head==-1;
return;
}
/* now, look for previous particle */
k = SphP[i].FOF_Prev;
/* the previous particle is ok, but is not included in a list */
if (SphP[k].FOF_Head==-1)
fof_link_to_local_head(k); /* find a head for this particle */
/* at this point k has a head or is a dead end */
if (SphP[k].FOF_Prev==-1) /* dead end */
{
SphP[i].FOF_Prev=-1;
SphP[i].FOF_Head=-1;
return;
}
else /* we can include it to the queue */
{
if (SphP[k].FOF_Head==-1)
endrun(1953);
/* !!! particle-particle comparison is not allowed here, as that may not be respected with multiple cpu !!! */
// if(All.FoF_HsmlMaxDistFactor>=0)
// {
//
// /* check the distance */
//
// dx = P[i].Pos[0] - P[k].Pos[0];
// dy = P[i].Pos[1] - P[k].Pos[1];
// dz = P[i].Pos[2] - P[k].Pos[2];
//
//
//#ifdef PERIODIC
// if(dx > boxHalf_X)
// dx -= boxSize_X;
// if(dx < -boxHalf_X)
// dx += boxSize_X;
// if(dy > boxHalf_Y)
// dy -= boxSize_Y;
// if(dy < -boxHalf_Y)
// dy += boxSize_Y;
// if(dz > boxHalf_Z)
// dz -= boxSize_Z;
// if(dz < -boxHalf_Z)
// dz += boxSize_Z;
//#endif
// r2 = dx * dx + dy * dy + dz * dz;
//
// if (r2 > pow(All.FoF_HsmlMaxDistFactor* SphP[i].Hsml,2)) /* the particle is too far away */
// {
// SphP[i].FOF_Prev=-1; /* mark it as a dead end */
// SphP[i].FOF_Head=-1;
// return;
// }
// }
/* now, everything is ok, add it to the list */
SphP[i].FOF_Head = SphP[k].FOF_Head;
/* deal with next */
n = SphP[k].FOF_Next;
SphP[k].FOF_Next = i;
SphP[i].FOF_Prev = k;
if (n!=-1) /* correct links with next particle */
{
SphP[i].FOF_Next = n;
SphP[n].FOF_Prev = i;
}
}
}
/*! Remove true heads based on some physical critteria
*
* Particles from groups that does not fit some physical critteria
* are marked as dead end, i.e.:
*
* SphP[next].FOF_Prev=-1;
* SphP[next].FOF_Head=-1;
*
*/
void fof_clean_local_groups(void)
{
int i;
int next;
for(i = 0; i < N_gas; i++)
if ( (P[i].Type == 0) && (SphP[i].Density>All.FoF_ThresholdDensity) )
if ( (SphP[i].FOF_Head==i) && (SphP[i].FOF_CPUHead==ThisTask) ) /* a true head */
{
//printf("a head : i=%d id=%08d (%g %g %g) rho=%g next=%d\n",i,P[i].ID,P[i].Pos[0],P[i].Pos[1],P[i].Pos[2],SphP[i].Density,SphP[i].FOF_Next);
/* here, we could select a group according to its central density or the number of particles linked to it */
if (SphP[i].Density<All.FoF_MinHeadDensity)
{
SphP[i].FOF_Prev=-1; /* flag as dead end */
SphP[i].FOF_Head=-1;
NHead--;
next=i;
while(next!=-1)
{
SphP[next].FOF_Prev=-1; /* flag as dead end */
SphP[next].FOF_Head=-1;
next=SphP[next].FOF_Next;
}
}
}
}
/*! Compute local tails
*
* For each head (true or pseudo), loop over particles from the groups
* and record the tail into the variable :
*
* SphP[i].FOF_Tail
*
*/
void fof_compute_local_tails(void)
{
int i;
int tail;
int next;
FLOAT Density;
for(i = 0; i < N_gas; i++)
if ( (P[i].Type == 0) && (SphP[i].Density>All.FoF_ThresholdDensity) )
if ( (SphP[i].FOF_Head==i) ) /* a head or pseudo head */
{
next=i;
Density = SphP[next].Density;
while(next!=-1)
{
if (SphP[next].Density>Density)
{
printf("(%d) i=%d iID=%d next=%d nextID=%d Density=%g SphP[next].Density=%g\n",ThisTask,i,P[i].ID,next,P[next].ID,Density,SphP[next].Density);
endrun(1255);
}
tail = next;
next=SphP[next].FOF_Next;
}
SphP[i].FOF_Tail = tail;
}
}
/*! Regroups pseudo head
*
* Pseudo heads that points towards the same distant particle
* are grouped
*
* SphP[i].FOF_Tail
*
*/
void fof_regroup_pseudo_heads(void)
{
int i,it;
int head,prev,cpuprev,tail,next;
int OldNpHead;
if (ThisTask==0)
printf("FoF: regroup pseudo heads\n");
printf("FoF: (%d) NpHead = %d\n",ThisTask,NpHead);
if (NpHead>0)
{
fofd = malloc(sizeof(struct fof_phdata) * NpHead);
for(i = 0,it = 0; i < N_gas; i++)
if ( (P[i].Type == 0) && (SphP[i].Density>All.FoF_ThresholdDensity) )
{
if ((SphP[i].FOF_Head==i) && (SphP[i].FOF_CPUHead!=ThisTask)) /* a pseudo head */
{
fofd[it].index = i;
fofd[it].prev = SphP[i].FOF_Prev;
fofd[it].cpuprev = SphP[i].FOF_CPUPrev;
fofd[it].density = SphP[i].Density;
it++;
}
}
qsort(fofd, NpHead, sizeof(struct fof_phdata), fof_compare_phdata);
/* now, loop over the sorted structure */
head = fofd[0].index;
prev = fofd[0].prev;
cpuprev = fofd[0].cpuprev;
OldNpHead = NpHead;
for(it = 1; it < OldNpHead; it++)
{
if( (fofd[it].prev != prev) || (fofd[it].cpuprev != cpuprev)) /* the pseudo head points towards another particle */
{
head = fofd[it].index; /* it becomes the new head */
prev = fofd[it].prev;
cpuprev = fofd[it].cpuprev;
}
else
{
NpHead--;
i = fofd[it].index;
if ( SphP[i].Density > SphP[head].Density) /* this allow the particle to be in density order */
{
/* the particle becomes the head */
i = head;
head = fofd[it].index;
prev = fofd[it].prev;
}
/* we can add the particle (i) to the tail of the pseudo head (head) */
/* change the head */
next = i;
while(next!=-1)
{
SphP[next].FOF_Head = head;
next = SphP[next].FOF_Next;
}
tail = SphP[head].FOF_Tail; /* !!! here, the density order is no longer conserved !!! */
SphP[head].FOF_Tail = SphP[i].FOF_Tail;
/* deal with tail */
SphP[tail].FOF_Next = i;
SphP[i].FOF_Prev = tail;
}
}
free(fofd);
}
}
/*! Regroups exported pseudo head
*
* 1) Link Pseudo heads (that have been exported) to local groups if needed
* 2) Pseudo heads (that have been exported) that points towards the same distant head
* are grouped
*
* SphP[i].FOF_Tail
*
*/
void fof_regroup_exported_pseudo_heads(void)
{
int i,it;
int head,prev,cpuprev,tail,next;
int OldNpHead;
if (ThisTask==0)
printf("FoF: regroup exported pseudo heads\n");
for(i = 0,it = 0; i < N_gas; i++)
if ( (P[i].Type == 0) && (SphP[i].Density>All.FoF_ThresholdDensity) )
{
if ((SphP[i].FOF_Head==i) && (SphP[i].FOF_CPUPrev==-2)) /* a true head, but among them, some may be old spseudo head */
{
if ( (SphP[i].FOF_CPUHead==ThisTask) ) /* its new head is now local, so, link it to local head */
{
NpHead--;
/* link it to the local true head */
head = SphP[i].FOF_Prev; /* as it is still a pseudo head */
/* change the head */
next = i;
while(next!=-1)
{
SphP[next].FOF_Head = head;
next = SphP[next].FOF_Next;
}
tail = SphP[head].FOF_Tail; /* !!! here, the density order is no longer conserved !!! */
SphP[head].FOF_Tail = SphP[i].FOF_Tail;
/* deal with tail */
SphP[tail].FOF_Next = i;
SphP[i].FOF_Prev = tail;
}
else
{
SphP[i].FOF_CPUPrev = SphP[i].FOF_CPUHead;
}
}
}
if (NpHead>0)
{
fofd = malloc(sizeof(struct fof_phdata) * NpHead);
NpHead = 0; /* re-count as some pHead have change their status after exportation */
for(i = 0,it = 0; i < N_gas; i++)
if ( (P[i].Type == 0) && (SphP[i].Density>All.FoF_ThresholdDensity) )
{
if ((SphP[i].FOF_Head==i) && (SphP[i].FOF_CPUHead!=ThisTask)) /* a pseudo head */
{
fofd[it].index = i;
fofd[it].prev = SphP[i].FOF_Prev;
fofd[it].cpuprev = SphP[i].FOF_CPUPrev;
fofd[it].density = SphP[i].Density;
it++;
NpHead++;
}
}
qsort(fofd, NpHead, sizeof(struct fof_phdata), fof_compare_phdata);
/* now, loop over the sorted structure */
head = fofd[0].index;
prev = fofd[0].prev;
cpuprev = fofd[0].cpuprev;
OldNpHead = NpHead;
for(it = 1; it < OldNpHead; it++)
{
if( (fofd[it].prev != prev) || (fofd[it].cpuprev != cpuprev)) /* the pseudo head points towards another particle */
{
head = fofd[it].index; /* it becomes the new head */
prev = fofd[it].prev;
cpuprev = fofd[it].cpuprev;
}
else /* the particle share the same head */
{
NpHead--;
i = fofd[it].index;
if ( SphP[i].Density > SphP[head].Density) /* this allow the particle to be in density order */
{
/* the particle becomes the head */
i = head;
head = fofd[it].index;
prev = fofd[it].prev;
}
/* we can add the particle (i) to the tail of the pseudo head (head) */
/* change the head */
next = i;
while(next!=-1)
{
SphP[next].FOF_Head = head;
next = SphP[next].FOF_Next;
}
tail = SphP[head].FOF_Tail; /* !!! here, the density order is no longer conserved !!! */
SphP[head].FOF_Tail = SphP[i].FOF_Tail;
/* deal with tail */
SphP[tail].FOF_Next = i;
SphP[i].FOF_Prev = tail;
}
}
free(fofd);
}
}
void fof_write_particles_id_and_indicies(void)
{
FILE *fd;
char fname[500];
int i;
sprintf(fname, "%d_snap.lst",ThisTask);
fd = fopen(fname, "w");
printf(".... writing particles...\n");
for(i = 0; i < N_gas; i++)
if ( (P[i].Type == 0) && (SphP[i].Density>All.FoF_ThresholdDensity) )
{
fprintf(fd,"%08d %08d\n",P[i].ID,i);
}
fclose(fd);
}
void fof_write_local_groups(void)
{
int i;
FILE *fd;
char fname[500];
int next;
for(i = 0; i < N_gas; i++)
if ( (P[i].Type == 0) && (SphP[i].Density>All.FoF_ThresholdDensity) )
if ( (SphP[i].FOF_Head==i) && (SphP[i].FOF_CPUHead==ThisTask) ) /* a true head */
{
printf("(%d) a head : i=%d id=%08d (%g %g %g) rho=%g next=%d\n",ThisTask,i,P[i].ID,P[i].Pos[0],P[i].Pos[1],P[i].Pos[2],SphP[i].Density,SphP[i].FOF_Next);
sprintf(fname, "groups/%d_group%08d.lst",ThisTask,P[i].ID);
fd = fopen(fname, "w");
next=i;
while(next!=-1)
{
fprintf(fd,"%08d\n",P[next].ID);
next=SphP[next].FOF_Next;
}
fclose(fd);
}
}
void fof_write_all_groups(void)
{
int i;
FILE *fd;
char fname[500];
int next;
if (ThisTask==0)
printf("FoF: write all groups\n");
for(i = 0; i < N_gas; i++)
if ( (P[i].Type == 0) && (SphP[i].Density>All.FoF_ThresholdDensity) )
if (SphP[i].FOF_Head==i)
{
if (SphP[i].FOF_CPUHead==ThisTask) /* a true head */
{
//printf("(%d) a head : i=%d head=%d on %d \n",ThisTask,i,SphP[i].FOF_Head,SphP[i].FOF_CPUHead);
sprintf(fname, "groups/%08dat%02d_group%08dat%02d.lst",i,ThisTask,SphP[i].FOF_Head,SphP[i].FOF_CPUHead);
}
else
{ /* a pseudo head */
//printf("(%d) a head (p) : i=%d head=%d on %d \n",ThisTask,i,SphP[i].FOF_Prev,SphP[i].FOF_CPUHead,SphP[i].FOF_CPUHead);
sprintf(fname, "groups/%08dat%02d_group%08dat%02d.lst",i,ThisTask,SphP[i].FOF_Prev,SphP[i].FOF_CPUHead);
}
fd = fopen(fname, "w");
next=i;
while(next!=-1)
{
fprintf(fd,"%08d\n",P[next].ID);
next=SphP[next].FOF_Next;
}
fclose(fd);
}
}
void fof_compute_groups_properties(void)
{
int i,j,k;
int ng;
int next;
int level,ngrp;
int sendTask,recvTask;
int *nsend_local, *nsend,*noffset;
int place;
int maxig,gid;
int ntg, npg;
MPI_Status status;
if (ThisTask==0)
printf("FoF: compute groups properties\n");
noffset = malloc(sizeof(int) * NTask); /* offsets of bunches in common list */
nsend_local = malloc(sizeof(int) * NTask);
nsend = malloc(sizeof(int) * NTask * NTask);
for(j = 0; j < NTask; j++)
nsend_local[j] = 0;
ng=0;
ntg = 0;
npg = 0;
for(i = 0; i < N_gas; i++)
if ( (P[i].Type == 0) && (SphP[i].Density>All.FoF_ThresholdDensity) )
if (SphP[i].FOF_Head==i)
{
if (ng==(NpHead+NHead))
{
printf("(%d) FoF: warning g=%d >= %d+%d !\n",ThisTask,ng,NpHead,NHead);
endrun(1961);
}
if (SphP[i].FOF_CPUHead==ThisTask) /* a true head */
{
//printf("(%d) a head : head i=%d on %d \n",ThisTask,SphP[i].FOF_Head,SphP[i].FOF_CPUHead);
Groups[ng].Head = SphP[i].FOF_Head;
Groups[ng].HeadID = P[i].ID;
for (k=0;k<3;k++)
Groups[ng].HeadPos[k] = P[i].Pos[k];
Groups[ng].HeadPotential = P[i].Potential * P[i].Mass;
ntg++;
}
else
{ /* a pseudo head */
//printf("(%d) a head (p) : head i=%d on %d \n",ThisTask,SphP[i].FOF_Prev,SphP[i].FOF_CPUHead,SphP[i].FOF_CPUHead);
Groups[ng].Head = SphP[i].FOF_Prev;
Groups[ng].HeadID = -1; /* don't know the ID */
npg++;
}
Groups[ng].Task = SphP[i].FOF_CPUHead;
Groups[ng].LocalHead = i;
nsend_local[SphP[i].FOF_CPUHead]++; /* count number of groups exported towards proc FOF_CPUHead */
/* some init */
fof_init_group_properties(ng);
ng++;
}
Ngroups = ng;
Ntgroups = ntg;
Npgroups = npg;
MPI_Allreduce(&Ngroups, &Tot_Ngroups, 1, MPI_INT, MPI_SUM, MPI_COMM_WORLD);
MPI_Allreduce(&Ntgroups, &Tot_Ntgroups, 1, MPI_INT, MPI_SUM, MPI_COMM_WORLD);
MPI_Allreduce(&Npgroups, &Tot_Npgroups, 1, MPI_INT, MPI_SUM, MPI_COMM_WORLD);
if (ThisTask==0)
{
printf("FoF: %d groups selected for star formation.\n",Tot_Ngroups);
printf("FoF: %d true groups. \n",Tot_Ntgroups);
printf("FoF: %d pseudo groups. \n",Tot_Npgroups);
}
/* sort groups */
qsort(Groups, Ngroups, sizeof(struct fof_groups_data), fof_compare_groups_key);
for (i=0;i<ng;i++)
{
Groups[i].Index = i; /* compute index */
if( Groups[i].Task == ThisTask ) /* a true head */
SphP[Groups[i].Head].FOF_gid = i; /* link towards the group id */
}
for(j = 1, noffset[0] = 0; j < NTask; j++)
noffset[j] = noffset[j - 1] + nsend_local[j - 1];
/* gather number of exported groups */
/* info : nsend[j * NTask + i] : number of elements of j send to i */
MPI_Allgather(nsend_local, NTask, MPI_INT, nsend, NTask, MPI_INT, MPI_COMM_WORLD);
/* find the max number of imported groups */
for (i=0,maxig=0;i<NTask;i++)
{
for (j=0;j<NTask;j++)
{
/* number of groups received by i */
if (i!=j)
maxig = dmax(maxig ,nsend[j * NTask + i] );
}
}
GroupsGet = malloc(sizeof(struct fof_groups_data) * maxig);
GroupsRecv = malloc(sizeof(struct fof_groups_data) * maxig);
/*
/* first communication
/*
/* get Head ID and Head Position
/*
*/
for(level = 1; level < (1 << PTask); level++)
{
for(ngrp = level; ngrp < (1 << PTask); ngrp++)
{
sendTask = ThisTask;
recvTask = ThisTask ^ ngrp;
if((recvTask < NTask))
{
if(nsend[ThisTask * NTask + recvTask] > 0 || nsend[recvTask * NTask + ThisTask] > 0)
{
if (nsend[recvTask * NTask + ThisTask]>maxig)
endrun(1963);
/* get the groups */
MPI_Sendrecv(&Groups[noffset[recvTask]],
nsend_local[recvTask] * sizeof(struct fof_groups_data), MPI_BYTE,
recvTask, TAG_HYDRO_A,
&GroupsGet[0],
nsend[recvTask * NTask + ThisTask] * sizeof(struct fof_groups_data), MPI_BYTE,
recvTask, TAG_HYDRO_A, MPI_COMM_WORLD, &status);
/* do the computation */
for(j = 0; j < nsend[recvTask * NTask + ThisTask]; j++)
{
if (GroupsGet[j].Task!=ThisTask)
endrun(1965);
GroupsGet[j].HeadID = P[GroupsGet[j].Head].ID;
for (k=0;k<3;k++)
GroupsGet[j].HeadPos[k] = P[GroupsGet[j].Head].Pos[k];
GroupsGet[j].HeadPotential = P[GroupsGet[j].Head].Potential*P[GroupsGet[j].Head].Mass;
}
/* get the result */
MPI_Sendrecv(&GroupsGet[0],
nsend[recvTask * NTask + ThisTask] * sizeof(struct fof_groups_data), MPI_BYTE,
recvTask, TAG_HYDRO_A,
&GroupsRecv[0],
nsend_local[recvTask] * sizeof(struct fof_groups_data),MPI_BYTE,
recvTask, TAG_HYDRO_A, MPI_COMM_WORLD, &status
);
/* add the result to the groups */
for(j = 0; j < nsend_local[recvTask]; j++)
{
place = GroupsRecv[j].Index;
Groups[place].HeadID = GroupsRecv[j].HeadID;
for (k=0;k<3;k++)
Groups[place].HeadPos[k] = GroupsRecv[j].HeadPos[k];
Groups[place].HeadPotential = GroupsRecv[j].HeadPotential;
}
}
}
}
level = ngrp - 1;
}
/*
/* compute properties of groups using local particles
*/
for (i=0;i<Ngroups;i++)
{
next=Groups[i].LocalHead; /* indice towards Head or Pseudo Head */
Groups[i].Nlocal=0;
while(next!=-1) /* loop over all local members */
{
fof_add_particle_properties(next,i,0);
/* count local particles linked to the head */
Groups[i].Nlocal++;
next=SphP[next].FOF_Next;
}
}
/*
/* second communication
*/
/* now, need to communicate */
for(level = 1; level < (1 << PTask); level++)
{
for(ngrp = level; ngrp < (1 << PTask); ngrp++)
{
sendTask = ThisTask;
recvTask = ThisTask ^ ngrp;
if((recvTask < NTask))
{
//printf("(%02d) -> %02d (level=%02d ngrp=%02d)\n",sendTask,recvTask,level,ngrp);
if(nsend[ThisTask * NTask + recvTask] > 0 || nsend[recvTask * NTask + ThisTask] > 0)
{
if (nsend[recvTask * NTask + ThisTask]>maxig)
endrun(1963);
/* get the particles */
MPI_Sendrecv(&Groups[noffset[recvTask]],
nsend_local[recvTask] * sizeof(struct fof_groups_data), MPI_BYTE,
recvTask, TAG_HYDRO_A,
&GroupsGet[0],
nsend[recvTask * NTask + ThisTask] * sizeof(struct fof_groups_data), MPI_BYTE,
recvTask, TAG_HYDRO_A, MPI_COMM_WORLD, &status);
for(j = 0; j < nsend[recvTask * NTask + ThisTask]; j++)
{
//if (ThisTask==0)
// printf("(%d) head=%08d \n",ThisTask,GroupsGet[j].Head);
if (GroupsGet[j].Task!=ThisTask)
endrun(1967);
gid = SphP[ GroupsGet[j].Head ].FOF_gid ;
if (Groups[gid].Head!=GroupsGet[j].Head)
{
printf("(%d) %d -> %d\n ",ThisTask,sendTask,recvTask);
printf("(%d) something is wrong here... GroupsGet[j].Head=%d GroupsGet[j].Task=%d gid=%d Groups[gid].Head=%d\n",ThisTask, GroupsGet[j].Head,GroupsGet[j].Task,gid,Groups[gid].Head);
endrun(1968);
}
fof_add_particle_properties(j,gid,1);
}
}
}
}
level = ngrp - 1;
}
fof_final_operations_on_groups_properties();
fof_set_groups_for_sfr();
/* now, each pseudo groups needs to be exported */
/* WARNING : in term of communication, this part is not optimized at all
as we communicte the whole structure while only some items are needed
*/
for(level = 1; level < (1 << PTask); level++)
{
for(ngrp = level; ngrp < (1 << PTask); ngrp++)
{
sendTask = ThisTask;
recvTask = ThisTask ^ ngrp;
if((recvTask < NTask))
{
if(nsend[ThisTask * NTask + recvTask] > 0 || nsend[recvTask * NTask + ThisTask] > 0)
{
if (nsend[recvTask * NTask + ThisTask]>maxig)
endrun(1963);
/* get the groups */
MPI_Sendrecv(&Groups[noffset[recvTask]],
nsend_local[recvTask] * sizeof(struct fof_groups_data), MPI_BYTE,
recvTask, TAG_HYDRO_A,
&GroupsGet[0],
nsend[recvTask * NTask + ThisTask] * sizeof(struct fof_groups_data), MPI_BYTE,
recvTask, TAG_HYDRO_A, MPI_COMM_WORLD, &status);
/* do the computation */
for(j = 0; j < nsend[recvTask * NTask + ThisTask]; j++)
{
if (GroupsGet[j].Task!=ThisTask)
endrun(1965);
GroupsGet[j].SfrFlag = Groups[ SphP[ GroupsGet[j].Head ].FOF_gid ].SfrFlag;
}
/* get the result */
MPI_Sendrecv(&GroupsGet[0],
nsend[recvTask * NTask + ThisTask] * sizeof(struct fof_groups_data), MPI_BYTE,
recvTask, TAG_HYDRO_A,
&GroupsRecv[0],
nsend_local[recvTask] * sizeof(struct fof_groups_data),MPI_BYTE,
recvTask, TAG_HYDRO_A, MPI_COMM_WORLD, &status
);
/* add the result to the groups */
for(j = 0; j < nsend_local[recvTask]; j++)
{
place = GroupsRecv[j].Index;
Groups[place].SfrFlag = GroupsRecv[j].SfrFlag;
}
}
}
}
level = ngrp - 1;
}
/* count star forming groups */
Nsfrgroups=0;
if (Ngroups>0)
{
for (gid=0;gid<Ngroups;gid++)
{
if( Groups[gid].SfrFlag == 1 ) /* the group must be flagged as forming stars */
Nsfrgroups++;
}
}
MPI_Allreduce(&Nsfrgroups, &Tot_Nsfrgroups, 1, MPI_INT, MPI_SUM, MPI_COMM_WORLD);
if (ThisTask==0)
printf("FoF: %d groups flagged for star formation.\n",Tot_Nsfrgroups);
free(nsend);
free(nsend_local);
free(noffset);
free(GroupsRecv);
free(GroupsGet);
}
void fof_init_group_properties(int gid)
{
int k;
Groups[gid].Mass = 0;
for (k=0;k<3;k++)
{
Groups[gid].MassCenter[k] = 0;
Groups[gid].MV2[k] = 0;
Groups[gid].MV[k] = 0;
}
Groups[gid].DensityMax = 0;
Groups[gid].DensityMin = pow(2,32);
Groups[gid].RadiusMax = 0;
Groups[gid].W = 0;
Groups[gid].K = 0;
Groups[gid].U = 0;
Groups[gid].N = 0;
}
/*! Include particle properties into a group
*
*/
void fof_add_particle_properties(int i, int gid, int mode)
{
int k;
int N;
float Mass;
float DensityMax;
float DensityMin;
float MassCenter[3];
float MV[3];
float MV2[3];
float W;
float U;
float RadiusMax;
float dx,dy,dz;
if (mode==0)
{
N = 1;
Mass = P[i].Mass;
DensityMax = SphP[i].Density;
DensityMin = SphP[i].Density;
W = P[i].Mass*P[i].Potential;
#ifdef ISOTHERM_EQS
U = P[i].Mass*SphP[i].Entropy;
#else
#ifdef MULTIPHASE
if (SphP[i].Phase== GAS_SPH)
#ifdef DENSITY_INDEPENDENT_SPH
U = P[i].Mass*SphP[i].Entropy / (GAMMA_MINUS1) * pow(SphP[i].EgyWtDensity / a3, GAMMA_MINUS1);
#else
U = P[i].Mass*SphP[i].Entropy / (GAMMA_MINUS1) * pow(SphP[i].Density / a3, GAMMA_MINUS1);
#endif
else
U = P[i].Mass*SphP[i].Entropy;
#else /* MULTIPHASE */
#ifdef DENSITY_INDEPENDENT_SPH
U = P[i].Mass*SphP[i].Entropy / (GAMMA_MINUS1) * pow(SphP[i].EgyWtDensity / a3, GAMMA_MINUS1);
#else
U = P[i].Mass*SphP[i].Entropy / (GAMMA_MINUS1) * pow(SphP[i].Density / a3, GAMMA_MINUS1);
#endif
#endif /*MULTIPHASE*/
#endif /*ISOTHERM_EQS*/
for (k=0;k<3;k++)
{
MassCenter[k] = P[i].Mass * P[i].Pos[k];
MV[k] = P[i].Mass * P[i].Vel[k];
MV2[k] = P[i].Mass * P[i].Vel[k] * P[i].Vel[k];
}
dx = Groups[gid].HeadPos[0] - P[i].Pos[0];
dy = Groups[gid].HeadPos[1] - P[i].Pos[1];
dz = Groups[gid].HeadPos[2] - P[i].Pos[2];
#ifdef PERIODIC /* find the closest image in the given box size */
if(dx > boxHalf_X)
dx -= boxSize_X;
if(dx < -boxHalf_X)
dx += boxSize_X;
if(dy > boxHalf_Y)
dy -= boxSize_Y;
if(dy < -boxHalf_Y)
dy += boxSize_Y;
if(dz > boxHalf_Z)
dz -= boxSize_Z;
if(dz < -boxHalf_Z)
dz += boxSize_Z;
#endif
RadiusMax = sqrt(dx * dx + dy * dy + dz * dz);
}
else
{
N = GroupsGet[i].N;
Mass = GroupsGet[i].Mass;
DensityMax = GroupsGet[i].DensityMax;
DensityMin = GroupsGet[i].DensityMin;
W = GroupsGet[i].W;
U = GroupsGet[i].U;
for (k=0;k<3;k++)
{
MassCenter[k] = GroupsGet[i].MassCenter[k];
MV[k] = GroupsGet[i].MV[k];
MV2[k] = GroupsGet[i].MV2[k];
}
RadiusMax = GroupsGet[i].RadiusMax;
}
Groups[gid].N += N;
Groups[gid].Mass += Mass;
Groups[gid].DensityMax = dmax(Groups[gid].DensityMax,DensityMax);
Groups[gid].DensityMin = dmin(Groups[gid].DensityMin,DensityMin);
Groups[gid].W += W;
Groups[gid].U += U;
for (k=0;k<3;k++)
{
Groups[gid].MassCenter[k] += MassCenter[k];
Groups[gid].MV[k] += MV[k];
Groups[gid].MV2[k] += MV2[k];
}
Groups[gid].RadiusMax = dmax(Groups[gid].RadiusMax,RadiusMax);
}
/*! Do some final opperations on groups properties
*
*/
void fof_final_operations_on_groups_properties()
{
int gid,k;
for (gid=0;gid<Ngroups;gid++)
{
Groups[gid].K =0;
for (k=0;k<3;k++)
{
Groups[gid].MassCenter[k] = Groups[gid].MassCenter[k]/Groups[gid].Mass;
Groups[gid].K += Groups[gid].MV2[k] - (Groups[gid].MV[k]*Groups[gid].MV[k])/Groups[gid].Mass ;
}
Groups[gid].K *= 0.5;
Groups[gid].W *= 0.5;
Groups[gid].T = (Groups[gid].U/Groups[gid].Mass) * GAMMA_MINUS1*All.mumh/All.Boltzmann;
//Groups[gid].Density = Groups[gid].Mass/( 4/3. * PI * pow(Groups[gid].RadiusMax,3) );
Groups[gid].Density = Groups[gid].DensityMax;
}
}
/*! Write groups properties
*
*/
void fof_write_groups_properties()
{
FILE *fd;
char buf[500];
int gid;
float vir1,vir2,Wp;
if (Ngroups>0)
{
if (ThisTask==0)
printf("FoF: write groups properties\n");
sprintf(buf, "%s%s.%d", All.OutputDir, "groups", ThisTask);
fd = fopen(buf,"w");
fprintf(fd,"# HeadID N Headx Heady Headz Mass CMx CMy CMz DensityMax DensityMin RadiusMax K U W Wp Vir1 Vir2\n");
for (gid=0;gid<Ngroups;gid++)
if( Groups[gid].Task == ThisTask )
{
//printf("(%02d)--> a true group (head=%d) mass=%g N=%d\n",ThisTask,Groups[gid].HeadID,Groups[i].Mass,Groups[i].N);
Wp = -All.G * Groups[gid].Mass * Groups[gid].Mass / Groups[gid].RadiusMax;
vir1 = -2*(Groups[gid].K +Groups[gid].U )/Groups[gid].W;
vir2 = -2*(Groups[gid].K +Groups[gid].U )/Wp;
fprintf(fd,"%08d %08d %g %g %g %g %g %g %g %g %g %g %g %g %g %g %g %g \n", Groups[gid].HeadID,Groups[gid].N,Groups[gid].HeadPos[0],Groups[gid].HeadPos[1],Groups[gid].HeadPos[2] , Groups[gid].Mass , Groups[gid].MassCenter[0],Groups[gid].MassCenter[1],Groups[gid].MassCenter[2],Groups[gid].DensityMax,Groups[gid].DensityMin,Groups[gid].RadiusMax,Groups[gid].K,Groups[gid].U,Groups[gid].W,Wp,vir1,vir2);
}
fclose(fd);
}
}
/*! Here, each group is flaged to form stars or not.
* The decision is based on physical properties of the group.
*
*/
void fof_set_groups_for_sfr()
{
int gid;
if (ThisTask==0)
printf("FoF: set groups for sfr\n");
Ntsfrgroups=0;
for (gid=0;gid<Ngroups;gid++)
if( Groups[gid].Task == ThisTask ) /* a true group */
{
/* init to 0 */
Groups[gid].SfrFlag = 0;
/* here, we needs to flag for sfr, according to physical quantities */
//printf("FoF: (%d) Members=%d MinMembers=%d\n",ThisTask,Groups[gid].N,All.FoF_MinGroupMembers);
if (Groups[gid].N<All.FoF_MinGroupMembers)
continue;
//printf("FoF: (%d) Mass=%g MinMass%g\n",ThisTask,Groups[gid].Mass*All.CMUtoMsol,All.FoF_MinGroupMass*All.CMUtoMsol);
if (Groups[gid].Mass<All.FoF_MinGroupMass)
continue;
#ifdef SFR
//printf("FoF: (%d) Temperature=%g MaxTemperature%g\n",ThisTask, Groups[gid].T, All.StarFormationTemperature);
if (Groups[gid].T>All.StarFormationTemperature)
continue;
/* compute the sfr probability */
double p,r;
double dt=0;
double tstar=1.;
double MeanBaryonicDensity;
double a3inv,hubble_a;
if(All.ComovingIntegrationOn)
{
hubble_a = All.Omega0 / (All.Time * All.Time * All.Time)
+ (1 - All.Omega0 - All.OmegaLambda) / (All.Time * All.Time) + All.OmegaLambda;
hubble_a = All.Hubble * sqrt(hubble_a);
a3inv = 1 / (All.Time * All.Time * All.Time);
}
else
{
hubble_a = 1.;
a3inv = 1.;
}
switch (All.StarFormationType)
{
case 0:
All.ThresholdDensity = All.StarFormationDensity;
break;
case 1:
MeanBaryonicDensity = All.OmegaBaryon * (3 * All.Hubble * All.Hubble / (8 * M_PI * All.G));
All.ThresholdDensity = dmax(All.StarFormationDensity/a3inv,200*MeanBaryonicDensity);
break;
case 2:
All.ThresholdDensity = All.StarFormationDensity;
All.StarFormationTime = 1./All.StarFormationCstar / pow(4*PI*All.G*All.StarFormationDensity,0.5);
break;
case 3:
All.StarFormationTime = 1./All.StarFormationCstar / pow(4*PI*All.G*All.StarFormationDensity,0.5);
/* All.ThresholdDensity is fixed further */
break;
}
dt = All.FoF_TimeBetFoF / hubble_a;
tstar = All.StarFormationTime / pow(Groups[gid].Density*a3inv/All.StarFormationDensity,0.5);
p = (1. - exp(-dt/tstar) );
- r = get_StarFormation_random_number( Groups[gid].HeadID);
+ if (All.FoF_StarFormationType==1)
+ p = 1;
+
+
+ r = get_StarFormation_random_number(Groups[gid].HeadID);
printf("FoF: (%d) Probability=%g Random=%g tstar=%g dt=%g GroupDensity=%g StarFormationDensity=%g \n",ThisTask, p,r,tstar,dt,Groups[gid].Density,All.StarFormationDensity );
if (r>p)
continue;
+
+
#endif
/* the groups may form stars */
Groups[gid].SfrFlag = 1;
Ntsfrgroups+=1;
//printf("%08d %08d %g %g %g %g %g %g %g %g %g %g %g %g %g \n", Groups[gid].HeadID,Groups[gid].N,Groups[gid].HeadPos[0],Groups[gid].HeadPos[1],Groups[gid].HeadPos[2] , Groups[gid].Mass , Groups[gid].MassCenter[0],Groups[gid].MassCenter[1],Groups[gid].MassCenter[2],Groups[gid].DensityMax,Groups[gid].DensityMin,Groups[gid].RadiusMax,Groups[gid].K,Groups[gid].U,Groups[gid].W);
}
MPI_Allreduce(&Ntsfrgroups, &Tot_Ntsfrgroups, 1, MPI_INT, MPI_SUM, MPI_COMM_WORLD);
if (ThisTask==0)
printf("FoF: %d true groups flagged for star formation.\n",Tot_Ntsfrgroups);
}
#ifdef SFR
/*! Flag particles for star formation based on their groups
*
*/
void fof_star_formation()
{
int gid;
int next;
int i;
FILE *fd;
char buf[500];
double mnewstars=0,Tot_mnewstars=0;
double mstars=0,Tot_mstars=0;
int Nnewstars=0,Tot_Nnewstars=0;
double star_formation_rate;
if (ThisTask==0)
printf("FoF: star formation\n");
if (Ngroups>0)
{
sprintf(buf, "%s%s.%d", All.OutputDir, "sfp", ThisTask);
fd = fopen(buf,"w");
for (gid=0;gid<Ngroups;gid++)
{
if( Groups[gid].SfrFlag == 1 ) /* the group must be flagged as forming stars */
{
/* loop over particles of the group */
next= Groups[gid].LocalHead ;
while(next!=-1)
{
/* create a new star */
P[next].Type = ST;
RearrangeParticlesFlag=1;
/* count mass */
mnewstars+=P[i].Mass;
Nnewstars+=1;
fprintf(fd,"%d\n",P[next].ID);
next=SphP[next].FOF_Next;
}
}
}
fflush(fd);
close(fd);
}
/* compute star mass */
mstars=0;
for (i=0;i< NumPart;i++)
{
if (P[i].Type==ST)
mstars+= P[i].Mass;
}
/* share results */
MPI_Allreduce(&mstars, &Tot_mstars, 1, MPI_DOUBLE, MPI_SUM, MPI_COMM_WORLD);
MPI_Allreduce(&mnewstars, &Tot_mnewstars, 1, MPI_DOUBLE, MPI_SUM, MPI_COMM_WORLD);
MPI_Allreduce(&Nnewstars, &Tot_Nnewstars, 1, MPI_INT, MPI_SUM, MPI_COMM_WORLD);
if (All.TimeStep>0)
star_formation_rate = Tot_mnewstars/All.TimeStep;
else
star_formation_rate = 0.;
#ifndef PY_INTERFACE
if (ThisTask==0)
{
//fprintf(FdSfr, "Step %d, Time: %g, NewStarsPart: %g \n", All.NumCurrentTiStep, All.Time, Tot_mstars);
fprintf(FdSfr, "%15g %15g %15g %15g %15g\n", All.Time,All.TimeStep,Tot_mstars,Tot_mnewstars,star_formation_rate);
fflush(FdSfr);
}
#endif
if(ThisTask == 0)
{
printf("FoF: Total number of new star particles : %d \n",(int) Tot_Nnewstars);
printf("FoF: Total number of star particles : %d%09d\n",(int) (All.TotN_stars / 1000000000), (int) (All.TotN_stars % 1000000000));
fflush(stdout);
}
#ifdef CHECK_BLOCK_ORDER
int typenow;
rearrange_particle_sequence();
typenow = 0;
for(i = 0; i < NumPart; i++)
{
if ((P[i].Type<typenow)&&(typenow<=ST))
{
printf("\nBlock order error\n");
printf("(%d) i=%d id=%d Type=%d typenow=%d\n\n",ThisTask,i,P[i].ID,P[i].Type,typenow);
endrun(999004);
}
typenow = P[i].Type;
}
#endif
#ifdef CHECK_ID_CORRESPONDENCE
rearrange_particle_sequence();
for(i = N_gas; i < N_gas+N_stars; i++)
{
if( StP[P[i].StPIdx].PIdx != i )
{
printf("\nP/StP correspondance error\n");
printf("(%d) (in starformation) N_stars=%d N_gas=%d i=%d id=%d P[i].StPIdx=%d StP[P[i].StPIdx].PIdx=%d\n\n",ThisTask,N_stars,N_gas,i,P[i].ID,P[i].StPIdx,StP[P[i].StPIdx].PIdx);
endrun(999005);
}
if(StP[P[i].StPIdx].ID != P[i].ID)
{
printf("\nP/StP correspondance error\n");
printf("(%d) (in starformation) N_gas=%d N_stars=%d i=%d Type=%d P.Id=%d P[i].StPIdx=%d StP[P[i].StPIdx].ID=%d \n\n",ThisTask,N_gas,N_stars,i,P[i].Type,P[i].ID, P[i].StPIdx, StP[P[i].StPIdx].ID);
endrun(999006);
}
}
#endif
/* force domaine decomposition */
if (Tot_Nnewstars>1)
All.NumForcesSinceLastDomainDecomp = All.TotNumPart * All.TreeDomainUpdateFrequency *10;
}
#endif /* SFR */
/*! This function is responsible of sampling
* the IMF.
*/
void fof_IMF_sampling(int Np)
{
int i,j,k;
double fp;
char buf[500];
FILE *fd = 0;
double Mcl=0;
for (i=0;i<Np;i++)
{
Mcl += FoF_P[i].Mass*All.CMUtoMsol;
}
if (ThisTask==0)
printf("\nFoF: fof_IMF_sampling : members = %6d cluster mass = %6g [Msol]\n",Np,Mcl);
#ifdef CHIMIE_OPTIMAL_SAMPLING
double current_mass;
double Mtot;
int stop_discrete_imf;
double Mrem_cl;
double Mrem_p;
double m1,m2,mp;
current_mass = optimal_init_norm(Mcl); /* in Msol, compute Cp->k and Cp->m_max */
/*
* do the descrete part of the IMF
*/
stop_discrete_imf=0;
for (k=0;k<Np;k++)
{
if (stop_discrete_imf)
break;
/* add at least one star */
Mtot+=current_mass;
FoF_P[k].MassNew = current_mass;
FoF_P[k].MassMax = current_mass;
FoF_P[k].MassMin = current_mass;
FoF_P[k].MassSSP = Mcl;
FoF_P[k].NStars = 1;
FoF_P[k].k = optimal_get_k_normalisation_factor(); /* imf normalisation, Cp->k is set by optimal_init_norm above */
if (optimal_stop_loop(current_mass))
break;
current_mass = optimal_get_next_mass(current_mass);
while( fabs( FoF_P[k].MassNew-FoF_P[k].Mass*All.CMUtoMsol + current_mass ) < fabs( FoF_P[k].MassNew-FoF_P[k].Mass*All.CMUtoMsol ) )
{
Mtot+=current_mass;
FoF_P[k].MassNew += current_mass;
FoF_P[k].MassMin = current_mass;
FoF_P[k].NStars++;
if ( FoF_P[k].NStars >= MAX_STARS_PER_PART)
{
stop_discrete_imf=1;
break;
}
if (optimal_stop_loop(current_mass))
break;
current_mass = optimal_get_next_mass(current_mass);
}
}
/*
* do the continuous part of the IMF
*/
// remaining mass in the cluster
Mrem_cl = Mcl - Mtot;
// mass of remaining particles
Mrem_p=0;
j = k;
for (k=j;k<Np;k++)
Mrem_p+=FoF_P[k].Mass*All.CMUtoMsol;
for (k=j;k<Np;k++)
{
mp = (FoF_P[k].Mass*All.CMUtoMsol)*Mrem_cl/Mrem_p;
m2 = FoF_P[k-1].MassMin;
m1 = optimal_get_m1_from_m2(m2,mp);
Mtot += mp;
FoF_P[k].MassNew = mp;
FoF_P[k].MassMax = m2;
FoF_P[k].MassMin = m1;
FoF_P[k].NStars = -1;
FoF_P[k].MassSSP = Mcl;
}
/* write some info */
if (ThisTask==0)
{
sprintf(buf, "%s%s_%04d.txt", All.OutputDir, All.FoF_SnapshotFileBase, All.FoF_SnapshotFileCount++);
if(!(fd = fopen(buf, "w")))
{
printf("can't open file `%s' for savinf fof.\n", buf);
}
else
{
fprintf(fd,"fof_IMF_sampling :Time=%g members = %6d cluster mass = %6g [Msol]\n",All.Time,Np,Mcl);
fprintf(fd,"\n i ID #stars MassMin MassMax CurrentMass MassNew MassRatio\n\n");
for (i=0;i<Np;i++)
{
fp = 100*fabs(FoF_P[i].Mass*All.CMUtoMsol - FoF_P[i].MassNew) / (FoF_P[i].Mass*All.CMUtoMsol);
//if (fp>50)
//printf("FoF: fof_IMF_sampling : %3d %6d %4d %8.4g %8.4g %6.2f %6.2f %g\n",i,FoF_P[i].ID,FoF_P[i].NStars,FoF_P[i].MassMin,FoF_P[i].MassMax,FoF_P[i].MassNew,FoF_P[i].Mass*All.CMUtoMsol, FoF_P[i].Mass*All.CMUtoMsol/FoF_P[i].MassNew );
fprintf(fd,"%3d %6d %4d %8.4g %8.4g %6.2f %6.2f %6.3f %g %g %g\n",i, FoF_P[i].ID, FoF_P[i].NStars, FoF_P[i].MassMin, FoF_P[i].MassMax, FoF_P[i].Mass*All.CMUtoMsol, FoF_P[i].MassNew, FoF_P[i].Mass*All.CMUtoMsol/FoF_P[i].MassNew, FoF_P[i].Pos[0], FoF_P[i].Pos[1], FoF_P[i].Pos[2] );
}
/* check */
fp = 100* (Mcl-Mtot)/(Mcl);
//if (fp>1e-3)
{
printf("FoF: fof_IMF_sampling : Mtot=%8.2f mass difference %7.3f %\n", Mtot,100* (Mcl-Mtot)/(Mcl) );
fprintf(fd,"\nMtot=%8.2f mass difference %7.3f %\n", Mtot,100* (Mcl-Mtot)/(Mcl) );
}
fflush(fd);
}
fclose(fd);
}
/* convert all masses in Code Mass Unit */
for (k=0;k<Np;k++)
{
FoF_P[k].MassMax *= All.MsoltoCMU;
FoF_P[k].MassMin *= All.MsoltoCMU;
FoF_P[k].MassSSP *= All.MsoltoCMU;
}
#endif
}
#ifdef SFR
/*! Flag particles for star formation based on their groups
* in addition, we address to each particles Min and Max stellar
* masses that it will represent, according to an IMF
*
*/
void fof_star_formation_and_IMF_sampling()
{
int gid;
int next;
int index;
int i,j,k;
double mnewstars=0,Tot_mnewstars=0;
double mstars=0,Tot_mstars=0;
int Nnewstars=0,Tot_Nnewstars=0;
double star_formation_rate;
int ntop;
int *ntoplist, *ntopoffset;
int *npartlist, *npartoffset;
int Np=0,Np_local;
int Ns=0;
int pass;
if (ThisTask==0)
printf("FoF: star formation and IMF sampling\n");
/* create the TopTGroups structure
TopTSfrGroups is a structure shared by all Tasks and contains
the Task and Head of all true groups.
*/
TopTSfrGroups = malloc(sizeof(struct fof_topgroups_exchange)*Tot_Ntsfrgroups);
TopTSfrGroups_local = malloc(sizeof(struct fof_topgroups_exchange)*Ntsfrgroups);
j=0;
if (Ngroups>0)
{
for (gid=0;gid<Ngroups;gid++)
{
if( Groups[gid].Task == ThisTask ) /* a true group */
{
if( Groups[gid].SfrFlag == 1 ) /* the group must be flagged as forming stars */
{
if (j==Ntsfrgroups)
{
printf("j=%d == Nsfrgroups=%d !!!\n",j,Ntsfrgroups);
endrun(1970);
}
TopTSfrGroups_local[j].Task = Groups[gid].Task;
TopTSfrGroups_local[j].Head = Groups[gid].Head;
j++;
}
}
}
}
ntoplist = malloc(sizeof(int) * NTask);
ntopoffset = malloc(sizeof(int) * NTask);
MPI_Allgather(&Ntsfrgroups, 1, MPI_INT, ntoplist, 1, MPI_INT, MPI_COMM_WORLD);
for(i = 0, ntopoffset[0] = 0; i < NTask; i++)
{
if(i > 0)
ntopoffset[i] = ntopoffset[i - 1] + ntoplist[i - 1];
}
for(i = 0; i < NTask; i++)
{
ntoplist[i] *= sizeof(struct fof_topgroups_exchange);
ntopoffset[i] *= sizeof(struct fof_topgroups_exchange);
}
MPI_Allgatherv(TopTSfrGroups_local, Ntsfrgroups * sizeof(struct fof_topgroups_exchange), MPI_BYTE, TopTSfrGroups, ntoplist, ntopoffset, MPI_BYTE, MPI_COMM_WORLD);
free(ntoplist);
free(ntopoffset);
/* check that TopTGroups is correct */
/*
for (i=0;i<Ntsfrgroups;i++)
printf(">>> local (%d) i=%d Task=%d Head=%d \n",ThisTask,i,TopTSfrGroups_local[i].Task,TopTSfrGroups_local[i].Head);
if (ThisTask==0)
for (i=0;i<Tot_Ntsfrgroups;i++)
printf(">>> global (%d) i=%d Task=%d Head=%d \n",ThisTask,i,TopTSfrGroups[i].Task,TopTSfrGroups[i].Head);
*/
/*
Here, we want to fill the FoF_P structure that contains particles information for a group that will form an IMF. This structure is shared by all Tasks.
Loop over all TopTSfrGroups and check if a local Group corresponds to it.
1) fill FoF_P_local with local information
2) send FoF_P_local to all and create FoF_P
*/
RearrangeParticlesFlag=0;
for (i=0;i<Tot_Ntsfrgroups;i++)
{
Np_local=-1;
pass=0;
if (Ngroups>0)
{
for (gid=0;gid<Ngroups;gid++)
{
if( Groups[gid].SfrFlag == 1 ) /* the group must be flagged as forming stars */
{
if ( (Groups[gid].Task==TopTSfrGroups[i].Task) && ((Groups[gid].Head==TopTSfrGroups[i].Head))) /* the pseudo group fit the top group */
{
/* count number of stars */
/* Note : Groups[gid].N != Np_local as it corresponds to the total group for the true Groups */
Np_local = 0;
next= Groups[gid].LocalHead ;
while(next!=-1)
{
Np_local+=1;
next=SphP[next].FOF_Next;
}
if (pass!=0)
{
printf("(%d) we already found a group linked to Task=%d Head=%d in this proc. \n",ThisTask,TopTSfrGroups[i].Task,TopTSfrGroups[i].Head);
printf("we should reduce such groups before... we prefere to stop.\n");
endrun(1974);
}
pass++;
/* prepare stars */
FoF_P_local = malloc(Np_local*sizeof(struct fof_particles_in));
next= Groups[gid].LocalHead ;
j=0;
while(next!=-1)
{
FoF_P_local[j].Mass = P[next].Mass;
FoF_P_local[j].Task = ThisTask;
FoF_P_local[j].Index = next;
FoF_P_local[j].ID = P[next].ID;
FoF_P_local[j].Pos[0] = P[next].Pos[0];
FoF_P_local[j].Pos[1] = P[next].Pos[1];
FoF_P_local[j].Pos[2] = P[next].Pos[2];
j++;
next=SphP[next].FOF_Next;
}
/* sort particles according to some physical quantity */
qsort(FoF_P_local, Np_local, sizeof(struct fof_particles_in), fof_compare_particles);
}
}
}
}
/* all Tasks get all particles and sample the IMF, thus, we no longer needs to communicate back */
if (Np_local==-1) /* no particles for this Task */
{
Np_local = 0;
FoF_P_local = malloc(Np_local*sizeof(struct fof_particles_in));
}
npartlist = malloc(sizeof(int) * NTask);
npartoffset = malloc(sizeof(int) * NTask);
MPI_Allgather(&Np_local, 1, MPI_INT, npartlist, 1, MPI_INT, MPI_COMM_WORLD);
for(k = 0, Np=0, npartoffset[0] = 0; k < NTask; k++)
{
Np += npartlist[k];
if(k > 0)
npartoffset[k] = npartoffset[k - 1] + npartlist[k - 1];
}
FoF_P = malloc(Np * sizeof(struct fof_particles_in));
for(k = 0; k < NTask; k++)
{
npartlist[k] *= sizeof(struct fof_particles_in);
npartoffset[k] *= sizeof(struct fof_particles_in);
}
MPI_Allgatherv(FoF_P_local, Np_local * sizeof(struct fof_particles_in), MPI_BYTE, FoF_P, npartlist, npartoffset, MPI_BYTE, MPI_COMM_WORLD);
/* sort particles according to some physical quantity */
qsort(FoF_P, Np, sizeof(struct fof_particles_in), fof_compare_particles);
//Ns += Np;
//if (ThisTask==0)
// printf("check i=%d Np=%d Ns=%d Task=%d Head=%d\n",i,Np,Ns,TopTSfrGroups[i].Task,TopTSfrGroups[i].Head);
//if (ThisTask==0)
//{
// printf("check %d \n",i);
// for(k=0;k<Np;k++)
// printf("check %d %g\n",FoF_P[k].ID,FoF_P[k].Mass);
//}
/*
now, sample the IMF
*/
fof_IMF_sampling(Np);
/* now, each proc copy its particles from FoF_P */
for(k = 0; k < Np; k++)
{
if (FoF_P[k].Task==ThisTask)
{
index = FoF_P[k].Index;
/* at this point, we turn gas particles into stellar particles */
#ifdef STELLAR_PROP
if (N_stars+Nnewstars+1 > All.MaxPartStars)
{
printf("No memory left for new star particle : N_stars+1=%d MaxPartStars=%d\n\n",N_stars+1,All.MaxPartStars);
endrun(999008);
}
#else
if (N_stars+Nnewstars+1 > All.MaxPart-N_gas)
{
printf("No memory left for new star particle : N_stars+1=%d All.MaxPart-N_gas=%d\n\n",N_stars+1,All.MaxPart-N_gas);
endrun(999009);
}
#endif
RearrangeParticlesFlag=1;
P[index].Mass = FoF_P[k].MassNew*All.MsoltoCMU;
P[index].Type = ST;
//P[index].FoFidx = k; /* reference to the FoF_P structure (no longer used) */
/* we store IMF information in the SPH structure in order to use the information in the rearrange_particle_sequence routine
and as StP still doesn't exists for these particles. */
SphP[index].FOF_MassMax = FoF_P[k].MassMax;
SphP[index].FOF_MassMin = FoF_P[k].MassMin;
SphP[index].FOF_MassSSP = FoF_P[k].MassSSP;
SphP[index].FOF_NStars = FoF_P[k].NStars;
#ifdef CHIMIE_OPTIMAL_SAMPLING
SphP[index].OptIMF_k = FoF_P[k].k;
SphP[index].OptIMF_CurrentMass = FoF_P[k].MassMax*All.CMUtoMsol;
#endif
mnewstars+=P[index].Mass;
Nnewstars+=1;
/* gather energy */
#ifdef FEEDBACK
LocalSysState.StarEnergyFeedback += SphP[i].EgySpecFeedback * P[i].Mass;
#endif
}
}
free(npartlist);
free(npartoffset);
free(FoF_P);
free(FoF_P_local);
}
free(TopTSfrGroups_local);
free(TopTSfrGroups);
/* rearrange_particle_sequence
* this may not be done after each group, as we
* need to conserve particle order
*/
rearrange_particle_sequence();
/* compute star mass */
mstars=0;
for (i=0;i< NumPart;i++)
{
if (P[i].Type==ST)
mstars+= P[i].Mass;
}
/* share results */
MPI_Allreduce(&mstars, &Tot_mstars, 1, MPI_DOUBLE, MPI_SUM, MPI_COMM_WORLD);
MPI_Allreduce(&mnewstars, &Tot_mnewstars, 1, MPI_DOUBLE, MPI_SUM, MPI_COMM_WORLD);
MPI_Allreduce(&Nnewstars, &Tot_Nnewstars, 1, MPI_INT, MPI_SUM, MPI_COMM_WORLD);
if (All.TimeStep>0)
star_formation_rate = Tot_mnewstars/All.TimeStep;
else
star_formation_rate = 0.;
#ifndef PY_INTERFACE
if (ThisTask==0)
{
//fprintf(FdSfr, "Step %d, Time: %g, NewStarsPart: %g \n", All.NumCurrentTiStep, All.Time, Tot_mstars);
fprintf(FdSfr, "%15g %15g %15g %15g %15g\n", All.Time,All.TimeStep,Tot_mstars,Tot_mnewstars,star_formation_rate);
fflush(FdSfr);
}
#endif
if(ThisTask == 0)
{
printf("FoF: Total number of new star particles : %d \n",(int) Tot_Nnewstars);
printf("FoF: Total number of star particles : %d%09d\n",(int) (All.TotN_stars / 1000000000), (int) (All.TotN_stars % 1000000000));
fflush(stdout);
}
#ifdef CHECK_BLOCK_ORDER
int typenow;
rearrange_particle_sequence();
typenow = 0;
for(i = 0; i < NumPart; i++)
{
if ((P[i].Type<typenow)&&(typenow<=ST))
{
printf("\nBlock order error\n");
printf("(%d) i=%d id=%d Type=%d typenow=%d\n\n",ThisTask,i,P[i].ID,P[i].Type,typenow);
endrun(999004);
}
typenow = P[i].Type;
}
#endif
#ifdef CHECK_ID_CORRESPONDENCE
rearrange_particle_sequence();
for(i = N_gas; i < N_gas+N_stars; i++)
{
if( StP[P[i].StPIdx].PIdx != i )
{
printf("\nP/StP correspondance error\n");
printf("(%d) (in starformation) N_stars=%d N_gas=%d i=%d id=%d P[i].StPIdx=%d StP[P[i].StPIdx].PIdx=%d\n\n",ThisTask,N_stars,N_gas,i,P[i].ID,P[i].StPIdx,StP[P[i].StPIdx].PIdx);
endrun(999005);
}
if(StP[P[i].StPIdx].ID != P[i].ID)
{
printf("\nP/StP correspondance error\n");
printf("(%d) (in starformation) N_gas=%d N_stars=%d i=%d Type=%d P.Id=%d P[i].StPIdx=%d StP[P[i].StPIdx].ID=%d \n\n",ThisTask,N_gas,N_stars,i,P[i].Type,P[i].ID, P[i].StPIdx, StP[P[i].StPIdx].ID);
endrun(999006);
}
}
#endif
/* force domaine decomposition */
if (Tot_Nnewstars>1)
All.NumForcesSinceLastDomainDecomp = All.TotNumPart * All.TreeDomainUpdateFrequency *10;
}
#endif /* SFR */
void fof_group_info(void)
{
int i;
int next;
for(i = 0; i < N_gas; i++)
if ( (P[i].Type == 0) && (SphP[i].Density>All.FoF_ThresholdDensity) )
if (P[i].ID==3480)
if (SphP[i].FOF_Head==i)
{
printf("(%d) this is indeed a head (CPUHead=%d CPUPrev=%d prev=%d)\n",ThisTask,SphP[i].FOF_CPUHead,SphP[i].FOF_CPUPrev,SphP[i].FOF_Prev);
next=i;
while(next!=-1)
{
printf("%08d\n",P[next].ID);
next=SphP[next].FOF_Next;
}
}
}
/*! Send pseudo heads and find correct head in distant CPU
*
* Here, we call the routinie : fof_link_pseudo_heads(j)
*
*/
void fof_send_and_link_pseudo_heads(void)
{
long long ntot, ntotleft;
int i, j, k, n, ngrp, maxfill, source, ndone;
int level, sendTask, recvTask, nexport, place;
int *nbuffer, *noffset, *nsend_local, *nsend, *numlist, *ndonelist;
int npleft;
int iter=0;
MPI_Status status;
numlist = malloc(NTask * sizeof(int) * NTask);
MPI_Allgather(&NpHead, 1, MPI_INT, numlist, 1, MPI_INT, MPI_COMM_WORLD);
for(i = 0, ntot = 0; i < NTask; i++)
ntot += numlist[i];
free(numlist);
noffset = malloc(sizeof(int) * NTask); /* offsets of bunches in common list */
nbuffer = malloc(sizeof(int) * NTask);
nsend_local = malloc(sizeof(int) * NTask);
nsend = malloc(sizeof(int) * NTask * NTask);
ndonelist = malloc(sizeof(int) * NTask);
do
{
i=0;
ntotleft = ntot; /* particles left for all tasks together */
while(ntotleft > 0)
{
for(j = 0; j < NTask; j++)
nsend_local[j] = 0;
/* do local particles and prepare export list */
for(nexport = 0, ndone = 0; i < N_gas && nexport < All.BunchSizeFOF - NTask; i++)
if ( (SphP[i].FOF_Head==i) && (SphP[i].FOF_CPUHead!=ThisTask) && (SphP[i].FOF_Done==0) ) /* a pseudo head */
{
ndone++;
j = SphP[i].FOF_CPUHead;
for(k = 0; k < 3; k++)
{
FOFDataIn[nexport].Pos[k] = P[i].Pos[k];
}
FOFDataIn[nexport].Density = SphP[i].Density;
FOFDataIn[nexport].Hsml = SphP[i].Hsml;
FOFDataIn[nexport].ID = P[i].ID;
FOFDataIn[nexport].FOF_Prev = SphP[i].FOF_Prev;
FOFDataIn[nexport].FOF_Head = SphP[i].FOF_Head;
FOFDataIn[nexport].Index = i;
FOFDataIn[nexport].Task = j;
nexport++;
nsend_local[j]++;
}
qsort(FOFDataIn, nexport, sizeof(struct FOFdata_in), fof_compare_key);
for(j = 1, noffset[0] = 0; j < NTask; j++)
noffset[j] = noffset[j - 1] + nsend_local[j - 1];
MPI_Allgather(nsend_local, NTask, MPI_INT, nsend, NTask, MPI_INT, MPI_COMM_WORLD);
/* now do the particles that need to be exported */
for(level = 1; level < (1 << PTask); level++)
{
for(j = 0; j < NTask; j++)
nbuffer[j] = 0;
for(ngrp = level; ngrp < (1 << PTask); ngrp++)
{
maxfill = 0;
for(j = 0; j < NTask; j++)
{
if((j ^ ngrp) < NTask)
if(maxfill < nbuffer[j] + nsend[(j ^ ngrp) * NTask + j])
maxfill = nbuffer[j] + nsend[(j ^ ngrp) * NTask + j];
}
if(maxfill >= All.BunchSizeFOF)
break;
sendTask = ThisTask;
recvTask = ThisTask ^ ngrp;
if(recvTask < NTask)
{
if(nsend[ThisTask * NTask + recvTask] > 0 || nsend[recvTask * NTask + ThisTask] > 0)
{
/* get the particles */
MPI_Sendrecv(&FOFDataIn[noffset[recvTask]],
nsend_local[recvTask] * sizeof(struct FOFdata_in), MPI_BYTE,
recvTask, TAG_HYDRO_A,
&FOFDataGet[nbuffer[ThisTask]],
nsend[recvTask * NTask + ThisTask] * sizeof(struct FOFdata_in), MPI_BYTE,
recvTask, TAG_HYDRO_A, MPI_COMM_WORLD, &status);
}
}
for(j = 0; j < NTask; j++)
if((j ^ ngrp) < NTask)
nbuffer[j] += nsend[(j ^ ngrp) * NTask + j];
}
/* now do the imported particles */
for(j = 0; j < nbuffer[ThisTask]; j++)
fof_link_pseudo_heads(j);
/* do a block to measure imbalance */
/* get the result */
for(j = 0; j < NTask; j++)
nbuffer[j] = 0;
for(ngrp = level; ngrp < (1 << PTask); ngrp++)
{
maxfill = 0;
for(j = 0; j < NTask; j++)
{
if((j ^ ngrp) < NTask)
if(maxfill < nbuffer[j] + nsend[(j ^ ngrp) * NTask + j])
maxfill = nbuffer[j] + nsend[(j ^ ngrp) * NTask + j];
}
if(maxfill >= All.BunchSizeFOF)
break;
sendTask = ThisTask;
recvTask = ThisTask ^ ngrp;
if(recvTask < NTask)
{
if(nsend[ThisTask * NTask + recvTask] > 0 || nsend[recvTask * NTask + ThisTask] > 0)
{
MPI_Sendrecv(&FOFDataResult[nbuffer[ThisTask]],
nsend[recvTask * NTask + ThisTask] * sizeof(struct FOFdata_out),
MPI_BYTE, recvTask, TAG_HYDRO_B,
&FOFDataPartialResult[noffset[recvTask]],
nsend_local[recvTask] * sizeof(struct FOFdata_out),
MPI_BYTE, recvTask, TAG_HYDRO_B, MPI_COMM_WORLD, &status);
for(j = 0; j < nsend_local[recvTask]; j++)
{
source = j + noffset[recvTask];
place = FOFDataIn[source].Index;
SphP[place].FOF_Head = FOFDataPartialResult[source].FOF_Head;
SphP[place].FOF_CPUHead = FOFDataPartialResult[source].FOF_CPUHead;
SphP[place].FOF_Prev = FOFDataPartialResult[source].FOF_Prev;
SphP[place].FOF_CPUPrev = FOFDataPartialResult[source].FOF_CPUPrev;
SphP[place].FOF_Done = FOFDataPartialResult[source].FOF_Done;
}
}
}
for(j = 0; j < NTask; j++)
if((j ^ ngrp) < NTask)
nbuffer[j] += nsend[(j ^ ngrp) * NTask + j];
}
level = ngrp - 1;
}
MPI_Allgather(&ndone, 1, MPI_INT, ndonelist, 1, MPI_INT, MPI_COMM_WORLD);
for(j = 0; j < NTask; j++)
ntotleft -= ndonelist[j];
}
/* do final operations on results */
/* count particles that needs another loop */
MPI_Barrier(MPI_COMM_WORLD);
for(i = 0, npleft = 0; i < N_gas; i++)
if ( (SphP[i].FOF_Head==i) && (SphP[i].FOF_CPUHead!=ThisTask) ) /* a pseudo head */
if (SphP[i].FOF_Done==0) /* not done yet */
npleft++;
numlist = malloc(NTask * sizeof(int) * NTask);
MPI_Allgather(&npleft, 1, MPI_INT, numlist, 1, MPI_INT, MPI_COMM_WORLD);
for(i = 0, ntot = 0; i < NTask; i++)
ntot += numlist[i];
free(numlist);
if(ntot > 0)
{
iter++;
if (ThisTask==0)
{
printf("FoF: iteration %03d : need to repeat for %d%09d particles.\n",iter,(int) (ntot / 1000000000), (int) (ntot % 1000000000));
fflush(stdout);
}
if (iter>10)
{
endrun(1260);
}
}
}
while(ntot>0);
free(ndonelist);
free(nsend);
free(nsend_local);
free(nbuffer);
free(noffset);
}
void fof_allocate_groups(void)
{
Groups = malloc(sizeof(struct fof_groups_data) * (NpHead+NHead));
}
void fof_free_groups(void)
{
free(Groups);
}
/*! Link an imported pseudo head to a local head
*
* If the imported particle points towards a particle
* that is actually exported, wait for another loop..
* and flag it as not done : .FOF_Done=0.
*
*/
void fof_link_pseudo_heads(int target)
{
int prev,tail,head;
if (FOFDataGet[target].Task!=ThisTask)
{
printf("(%d) received ID=%d task=%d\n",ThisTask,FOFDataGet[target].ID,FOFDataGet[target].Task);
endrun(1956);
}
prev = FOFDataGet[target].FOF_Prev;
if (SphP[prev].FOF_Prev==-1) /* a dead end */
{
FOFDataResult[target].FOF_Prev = -1;
FOFDataResult[target].FOF_Head = -1;
FOFDataResult[target].FOF_Done = 1;
return;
}
/* find a valid head */
head = SphP[prev].FOF_Head;
if (head==-1)
endrun(1957);
if (SphP[head].FOF_Head==-1) /* a dead end */
{
FOFDataResult[target].FOF_Prev = -1;
FOFDataResult[target].FOF_Head = -1;
FOFDataResult[target].FOF_Done = 1;
return;
}
if (head!=SphP[head].FOF_Head)
{
printf("(%d) the head particle i=%d (i.FOF_Head=%d) is not a head !!! (i.FOF_CPUPrev=%d)\n",ThisTask,head,SphP[head].FOF_Head,SphP[head].FOF_CPUPrev);
endrun(1958);
}
/* head is now either
- a true head
- a pseudo head, but not done
- a pseudo head, done (prev=-2)
- a pseudo head, done
*/
/* a true head */
if ((SphP[head].FOF_CPUHead==ThisTask)&&(SphP[head].FOF_CPUPrev!=-2))
{
FOFDataResult[target].FOF_Prev = head; /* for this pseudo head, the head remains the same, but the real head is stored in prev */
FOFDataResult[target].FOF_CPUPrev = ThisTask;
FOFDataResult[target].FOF_Head = FOFDataGet[target].Index;
FOFDataResult[target].FOF_CPUHead = ThisTask;
FOFDataResult[target].FOF_Done = 1;
return;
}
/* a pseudo head, but not done */
if ( (SphP[head].FOF_CPUHead!=ThisTask) && (SphP[head].FOF_Done==0))
{
FOFDataResult[target].FOF_Prev = FOFDataGet[target].FOF_Prev; /* do nothing */
FOFDataResult[target].FOF_CPUPrev = ThisTask;
FOFDataResult[target].FOF_Head = FOFDataGet[target].FOF_Head; /* do nothing */
FOFDataResult[target].FOF_CPUHead = ThisTask;
FOFDataResult[target].FOF_Done = 0;
return;
}
/* a pseudo head, but done (prev=-2) */
if ((SphP[head].FOF_CPUHead==ThisTask)&&(SphP[head].FOF_CPUPrev==-2))
{
FOFDataResult[target].FOF_Prev = SphP[head].FOF_Prev;
FOFDataResult[target].FOF_CPUPrev = -2; /* this is to keep the trace that the particle was as pseudo head, as its new FOF_CPUHead could be now its own CPU */
FOFDataResult[target].FOF_Head = FOFDataGet[target].Index; /* WARNING : THOSE PARTICLES ARE PSEUDO HEAD THAT LINK TO OTHER CPU THAN THE INITIAL ONE */
FOFDataResult[target].FOF_CPUHead = SphP[head].FOF_CPUHead; /* instead of this ThisTask */
FOFDataResult[target].FOF_Done = 1;
return;
}
/* a pseudo head, but done */
if ( (SphP[head].FOF_CPUHead!=ThisTask) && (SphP[head].FOF_Done==1))
{
FOFDataResult[target].FOF_Prev = SphP[head].FOF_Prev;
FOFDataResult[target].FOF_CPUPrev = -2; /* this is to keep the trace that the particle was as pseudo head, as its new FOF_CPUHead could be now its own CPU */
FOFDataResult[target].FOF_Head = FOFDataGet[target].Index; /* WARNING : THOSE PARTICLES ARE PSEUDO HEAD THAT LINK TO OTHER CPU THAN THE INITIAL ONE */
FOFDataResult[target].FOF_CPUHead = SphP[head].FOF_CPUHead; /* instead of this ThisTask */
FOFDataResult[target].FOF_Done = 1;
return;
}
printf("we have a problem here !!\n");
endrun(1974);
}
/*! This is a comparison kernel for a sort routine, which is used to group
* particles that are going to be exported to the same CPU.
*/
int fof_compare_key(const void *a, const void *b)
{
if(((struct FOFdata_in *) a)->Task < (((struct FOFdata_in *) b)->Task))
return -1;
if(((struct FOFdata_in *) a)->Task > (((struct FOFdata_in *) b)->Task))
return +1;
return 0;
}
/*! This is a comparison kernel for a sort routine, which is used to group
* particles that are going to be exported to the same CPU.
*/
int fof_compare_phdata(const void *a, const void *b)
{
if(((struct fof_phdata *) a)->prev < (((struct fof_phdata *) b)->prev))
return -1;
if(((struct fof_phdata *) a)->prev > (((struct fof_phdata *) b)->prev))
return +1;
return 0;
}
/*! This is a comparison kernel for a sort routine, which is used to group
* particles that are going to be exported to the same CPU.
*/
int fof_compare_groups_key(const void *a, const void *b)
{
if(((struct fof_groups_data *) a)->Task < (((struct fof_groups_data *) b)->Task))
return -1;
if(((struct fof_groups_data *) a)->Task > (((struct fof_groups_data *) b)->Task))
return +1;
return 0;
}
/*! This is a comparison kernel for a sort routine, which is used to sort
* particles according to some physical quantity.
*/
int fof_compare_particles(const void *a, const void *b)
{
/* if the mass is equal, sort with respect to ID */
if(((struct fof_particles_in *) a)->Mass == (((struct fof_particles_in *) b)->Mass))
{
if(((struct fof_particles_in *) a)->ID < (((struct fof_particles_in *) b)->ID))
return +1;
if(((struct fof_particles_in *) a)->ID > (((struct fof_particles_in *) b)->ID))
return -1;
return 0;
}
else
{
if(((struct fof_particles_in *) a)->Mass < (((struct fof_particles_in *) b)->Mass))
return +1;
if(((struct fof_particles_in *) a)->Mass > (((struct fof_particles_in *) b)->Mass))
return -1;
return 0;
}
}
#endif // FOF
diff --git a/src/python_interface.c b/src/python_interface.c
index 892832f..5c0b1d7 100644
--- a/src/python_interface.c
+++ b/src/python_interface.c
@@ -1,4809 +1,4813 @@
#ifdef PY_INTERFACE
#include <Python.h>
#include <math.h>
#include <string.h>
#include <stdio.h>
#include <numpy/arrayobject.h>
#include <mpi.h>
#include "allvars.h"
#include "proto.h"
#define TO_INT(a) ( (PyArrayObject*) PyArray_CastToType(a, PyArray_DescrFromType(NPY_INT) ,0) )
#define TO_DOUBLE(a) ( (PyArrayObject*) PyArray_CastToType(a, PyArray_DescrFromType(NPY_DOUBLE) ,0) )
#define TO_FLOAT(a) ( (PyArrayObject*) PyArray_CastToType(a, PyArray_DescrFromType(NPY_FLOAT) ,0) )
static int Init()
{
/* main.c */
RestartFlag = 0;
All.CPU_TreeConstruction = All.CPU_TreeWalk = All.CPU_Gravity = All.CPU_Potential = All.CPU_Domain =
All.CPU_Snapshot = All.CPU_Total = All.CPU_CommSum = All.CPU_Imbalance = All.CPU_Hydro =
All.CPU_HydCompWalk = All.CPU_HydCommSumm = All.CPU_HydImbalance =
All.CPU_EnsureNgb = All.CPU_Predict = All.CPU_TimeLine = All.CPU_PM = All.CPU_Peano = 0;
CPUThisRun = 0;
/* from init.c, after read ic */
int i, j;
double a3;
All.Time = All.TimeBegin;
All.Ti_Current = 0;
if(All.ComovingIntegrationOn)
{
All.Timebase_interval = (log(All.TimeMax) - log(All.TimeBegin)) / TIMEBASE;
a3 = All.Time * All.Time * All.Time;
}
else
{
All.Timebase_interval = (All.TimeMax - All.TimeBegin) / TIMEBASE;
a3 = 1;
}
set_softenings();
All.NumCurrentTiStep = 0; /* setup some counters */
All.SnapshotFileCount = 0;
if(RestartFlag == 2)
All.SnapshotFileCount = atoi(All.InitCondFile + strlen(All.InitCondFile) - 3) + 1;
All.TotNumOfForces = 0;
All.NumForcesSinceLastDomainDecomp = 0;
if(All.ComovingIntegrationOn)
if(All.PeriodicBoundariesOn == 1)
check_omega();
All.TimeLastStatistics = All.TimeBegin - All.TimeBetStatistics;
#ifdef AGN_ACCRETION
All.TimeLastAccretion = All.TimeBegin - All.TimeBetAccretion;
All.LastMTotInRa = 0;
#endif
#ifdef BONDI_ACCRETION
All.BondiTimeLast = All.TimeBegin - All.BondiTimeBet;
#endif
#ifdef FOF
All.FoF_TimeLastFoF = All.TimeBegin - All.FoF_TimeBetFoF;
#endif
#ifdef BUBBLES
All.EnergyBubbles=0;
#endif
if(All.ComovingIntegrationOn) /* change to new velocity variable */
{
for(i = 0; i < NumPart; i++)
for(j = 0; j < 3; j++)
P[i].Vel[j] *= sqrt(All.Time) * All.Time;
}
for(i = 0; i < NumPart; i++) /* start-up initialization */
{
for(j = 0; j < 3; j++)
P[i].GravAccel[j] = 0;
#ifdef PMGRID
for(j = 0; j < 3; j++)
P[i].GravPM[j] = 0;
#endif
P[i].Ti_endstep = 0;
P[i].Ti_begstep = 0;
P[i].OldAcc = 0;
P[i].GravCost = 1;
P[i].Potential = 0;
}
#ifdef PMGRID
All.PM_Ti_endstep = All.PM_Ti_begstep = 0;
#endif
#ifdef FLEXSTEPS
All.PresentMinStep = TIMEBASE;
for(i = 0; i < NumPart; i++) /* start-up initialization */
{
P[i].FlexStepGrp = (int) (TIMEBASE * get_random_number(P[i].ID));
}
#endif
for(i = 0; i < N_gas; i++) /* initialize sph_properties */
{
for(j = 0; j < 3; j++)
{
SphP[i].VelPred[j] = P[i].Vel[j];
SphP[i].HydroAccel[j] = 0;
}
SphP[i].DtEntropy = 0;
if(RestartFlag == 0)
{
SphP[i].Hsml = 0;
SphP[i].Density = -1;
}
}
ngb_treeallocate(MAX_NGB);
force_treeallocate(All.TreeAllocFactor * All.MaxPart, All.MaxPart);
All.NumForcesSinceLastDomainDecomp = 1 + All.TotNumPart * All.TreeDomainUpdateFrequency;
Flag_FullStep = 1; /* to ensure that Peano-Hilber order is done */
domain_Decomposition(); /* do initial domain decomposition (gives equal numbers of particles) */
ngb_treebuild(); /* will build tree */
setup_smoothinglengths();
#ifdef CHIMIE
#ifndef CHIMIE_INPUT_ALL
stars_setup_smoothinglengths();
#endif
#endif
#ifdef TESSEL
setup_searching_radius();
#endif
TreeReconstructFlag = 1;
#ifndef TESSEL /*do not convert if tessel is used. In tessel, the conversion is done with tessel_convert_energy_to_entropy() */
/* at this point, the entropy variable normally contains the
* internal energy, read in from the initial conditions file, unless the file
* explicitly signals that the initial conditions contain the entropy directly.
* Once the density has been computed, we can convert thermal energy to entropy.
*/
#ifndef DENSITY_INDEPENDENT_SPH /* in this case, entropy is correctely defined in setup_smoothinglengths */
#ifndef ISOTHERM_EQS
if(header.flag_entropy_instead_u == 0)
{
for(i = 0; i < N_gas; i++)
{
#ifdef MULTIPHASE
{
switch(SphP[i].Phase)
{
case GAS_SPH:
SphP[i].Entropy = GAMMA_MINUS1 * SphP[i].Entropy / pow(SphP[i].Density / a3, GAMMA_MINUS1);
break;
case GAS_STICKY:
break;
case GAS_DARK:
SphP[i].Entropy = -SphP[i].Entropy;
break;
}
}
#else
SphP[i].Entropy = GAMMA_MINUS1 * SphP[i].Entropy / pow(SphP[i].Density / a3, GAMMA_MINUS1);
#endif
}
}
#endif
#endif /* DENSITY_INDEPENDENT_SPH */
#ifdef ENTROPYPRED
for(i = 0; i < N_gas; i++)
SphP[i].EntropyPred = SphP[i].Entropy;
#endif
#endif /* TESSEL */
return 1;
}
static void Begrun1()
{
struct global_data_all_processes all;
if(ThisTask == 0)
{
printf("\nThis is pyGadget, version `%s'.\n", GADGETVERSION);
printf("\nRunning on %d processors.\n", NTask);
}
//read_parameter_file(ParameterFile); /* ... read in parameters for this run */
allocate_commbuffers(); /* ... allocate buffer-memory for particle
exchange during force computation */
set_units();
#if defined(PERIODIC) && (!defined(PMGRID) || defined(FORCETEST))
ewald_init();
#endif
//open_outputfiles();
random_generator = gsl_rng_alloc(gsl_rng_ranlxd1);
gsl_rng_set(random_generator, 42); /* start-up seed */
#ifdef PMGRID
long_range_init();
#endif
All.TimeLastRestartFile = CPUThisRun;
if(RestartFlag == 0 || RestartFlag == 2)
{
set_random_numbers();
}
else
{
all = All; /* save global variables. (will be read from restart file) */
restart(RestartFlag); /* ... read restart file. Note: This also resets
all variables in the struct `All'.
However, during the run, some variables in the parameter
file are allowed to be changed, if desired. These need to
copied in the way below.
Note: All.PartAllocFactor is treated in restart() separately.
*/
All.MinSizeTimestep = all.MinSizeTimestep;
All.MaxSizeTimestep = all.MaxSizeTimestep;
All.BufferSize = all.BufferSize;
All.BunchSizeForce = all.BunchSizeForce;
All.BunchSizeDensity = all.BunchSizeDensity;
All.BunchSizeHydro = all.BunchSizeHydro;
All.BunchSizeDomain = all.BunchSizeDomain;
All.TimeLimitCPU = all.TimeLimitCPU;
All.ResubmitOn = all.ResubmitOn;
All.TimeBetSnapshot = all.TimeBetSnapshot;
All.TimeBetStatistics = all.TimeBetStatistics;
All.CpuTimeBetRestartFile = all.CpuTimeBetRestartFile;
All.ErrTolIntAccuracy = all.ErrTolIntAccuracy;
All.MaxRMSDisplacementFac = all.MaxRMSDisplacementFac;
All.ErrTolForceAcc = all.ErrTolForceAcc;
All.TypeOfTimestepCriterion = all.TypeOfTimestepCriterion;
All.TypeOfOpeningCriterion = all.TypeOfOpeningCriterion;
All.NumFilesWrittenInParallel = all.NumFilesWrittenInParallel;
All.TreeDomainUpdateFrequency = all.TreeDomainUpdateFrequency;
All.SnapFormat = all.SnapFormat;
All.NumFilesPerSnapshot = all.NumFilesPerSnapshot;
All.MaxNumNgbDeviation = all.MaxNumNgbDeviation;
All.ArtBulkViscConst = all.ArtBulkViscConst;
All.OutputListOn = all.OutputListOn;
All.CourantFac = all.CourantFac;
All.OutputListLength = all.OutputListLength;
memcpy(All.OutputListTimes, all.OutputListTimes, sizeof(double) * All.OutputListLength);
strcpy(All.ResubmitCommand, all.ResubmitCommand);
strcpy(All.OutputListFilename, all.OutputListFilename);
strcpy(All.OutputDir, all.OutputDir);
strcpy(All.RestartFile, all.RestartFile);
strcpy(All.EnergyFile, all.EnergyFile);
strcpy(All.InfoFile, all.InfoFile);
strcpy(All.CpuFile, all.CpuFile);
strcpy(All.TimingsFile, all.TimingsFile);
strcpy(All.SnapshotFileBase, all.SnapshotFileBase);
if(All.TimeMax != all.TimeMax)
readjust_timebase(All.TimeMax, all.TimeMax);
}
}
static void Begrun2()
{
if(RestartFlag == 0 || RestartFlag == 2)
Init(); /* ... read in initial model */
#ifdef PMGRID
long_range_init_regionsize();
#endif
if(All.ComovingIntegrationOn)
init_drift_table();
//if(RestartFlag == 2)
// All.Ti_nextoutput = find_next_outputtime(All.Ti_Current + 1);
//else
// All.Ti_nextoutput = find_next_outputtime(All.Ti_Current);
All.TimeLastRestartFile = CPUThisRun;
}
/************************************************************/
/* PYTHON INTERFACE */
/************************************************************/
static PyObject *gadget_Info(PyObject *self, PyObject *args, PyObject *kwds)
{
printf("I am proc %d among %d procs.\n",ThisTask,NTask);
return Py_BuildValue("i",1);
}
static PyObject *gadget_InitMPI(PyObject *self, PyObject *args, PyObject *kwds)
{
//MPI_Init(0, 0); /* this is done in mpi4py */
MPI_Comm_rank(MPI_COMM_WORLD, &ThisTask);
MPI_Comm_size(MPI_COMM_WORLD, &NTask);
for(PTask = 0; NTask > (1 << PTask); PTask++);
return Py_BuildValue("i",1);
}
static PyObject * gadget_InitDefaultParameters(PyObject* self)
{
/* list of Gadget parameters */
/*
All.InitCondFile ="ICs/cluster_littleendian.dat";
All.OutputDir ="cluster/";
All.EnergyFile ="energy.txt";
All.InfoFile ="info.txt";
All.TimingsFile ="timings.txt";
All.CpuFile ="cpu.txt";
All.RestartFile ="restart";
All.SnapshotFileBase ="snapshot";
All.OutputListFilename ="parameterfiles/outputs_lcdm_gas.txt";
*/
/* CPU time -limit */
All.TimeLimitCPU = 36000; /* = 10 hours */
All.ResubmitOn = 0;
//All.ResubmitCommand = "my-scriptfile";
All.ICFormat = 1;
All.SnapFormat = 1;
All.ComovingIntegrationOn = 0;
All.TypeOfTimestepCriterion = 0;
All.OutputListOn = 0;
All.PeriodicBoundariesOn = 0;
/* Caracteristics of run */
All.TimeBegin = 0.0; /*% Begin of the simulation (z=23)*/
All.TimeMax = 1.0;
All.Omega0 = 0;
All.OmegaLambda = 0;
All.OmegaBaryon = 0;
All.HubbleParam = 0;
All.BoxSize = 0;
/* Output frequency */
All.TimeBetSnapshot = 0.1;
All.TimeOfFirstSnapshot = 0.0; /*% 5 constant steps in log(a) */
All.CpuTimeBetRestartFile = 36000.0; /* here in seconds */
All.TimeBetStatistics = 0.05;
All.NumFilesPerSnapshot = 1;
All.NumFilesWrittenInParallel = 1;
/* Accuracy of time integration */
All.ErrTolIntAccuracy = 0.025;
All.MaxRMSDisplacementFac = 0.2;
All.CourantFac = 0.15;
All.MaxSizeTimestep = 0.03;
All.MinSizeTimestep = 0.0;
/* Tree algorithm, force accuracy, domain update frequency */
All.ErrTolTheta = 0.7;
All.TypeOfOpeningCriterion = 0;
All.ErrTolForceAcc = 0.005;
All.TreeDomainUpdateFrequency = 0.1;
/* Further parameters of SPH */
All.DesNumNgb = 50;
All.MaxNumNgbDeviation = 2;
All.ArtBulkViscConst = 0.8;
All.InitGasTemp = 0;
All.MinGasTemp = 0;
/* Memory allocation */
All.PartAllocFactor = 2.0;
All.TreeAllocFactor = 2.0;
All.BufferSize = 30;
/* System of units */
All.UnitLength_in_cm = 3.085678e21; /* 1.0 kpc */
All.UnitMass_in_g = 1.989e43; /* 1.0e10 solar masses */
All.UnitVelocity_in_cm_per_s = 1e5; /* 1 km/sec */
All.GravityConstantInternal = 0;
/* Softening lengths */
All.MinGasHsmlFractional = 0.25;
All.SofteningGas = 0.5;
All.SofteningHalo = 0.5;
All.SofteningDisk = 0.5;
All.SofteningBulge = 0.5;
All.SofteningStars = 0.5;
All.SofteningBndry = 0.5;
All.SofteningGasMaxPhys = 0.5;
All.SofteningHaloMaxPhys = 0.5;
All.SofteningDiskMaxPhys = 0.5;
All.SofteningBulgeMaxPhys = 0.5;
All.SofteningStarsMaxPhys = 0.5;
All.SofteningBndryMaxPhys = 0.5;
return Py_BuildValue("i",1);
}
static PyObject * gadget_GetParameters()
{
PyObject *dict;
PyObject *key;
PyObject *value;
dict = PyDict_New();
/* CPU time -limit */
key = PyString_FromString("TimeLimitCPU");
value = PyFloat_FromDouble(All.TimeLimitCPU);
PyDict_SetItem(dict,key,value);
key = PyString_FromString("ResubmitOn");
value = PyFloat_FromDouble(All.ResubmitOn);
PyDict_SetItem(dict,key,value);
//All.ResubmitCommand
key = PyString_FromString("ICFormat");
value = PyInt_FromLong(All.ICFormat);
PyDict_SetItem(dict,key,value);
key = PyString_FromString("SnapFormat");
value = PyInt_FromLong(All.SnapFormat);
PyDict_SetItem(dict,key,value);
key = PyString_FromString("ComovingIntegrationOn");
value = PyInt_FromLong(All.ComovingIntegrationOn);
PyDict_SetItem(dict,key,value);
key = PyString_FromString("TypeOfTimestepCriterion");
value = PyInt_FromLong(All.TypeOfTimestepCriterion);
PyDict_SetItem(dict,key,value);
key = PyString_FromString("OutputListOn");
value = PyInt_FromLong(All.OutputListOn);
PyDict_SetItem(dict,key,value);
key = PyString_FromString("PeriodicBoundariesOn");
value = PyInt_FromLong(All.PeriodicBoundariesOn);
PyDict_SetItem(dict,key,value);
/* Caracteristics of run */
key = PyString_FromString("TimeBegin");
value = PyFloat_FromDouble(All.TimeBegin);
PyDict_SetItem(dict,key,value);
key = PyString_FromString("TimeMax");
value = PyFloat_FromDouble(All.TimeMax);
PyDict_SetItem(dict,key,value);
key = PyString_FromString("Omega0");
value = PyFloat_FromDouble(All.Omega0);
PyDict_SetItem(dict,key,value);
key = PyString_FromString("OmegaLambda");
value = PyFloat_FromDouble(All.OmegaLambda);
PyDict_SetItem(dict,key,value);
key = PyString_FromString("OmegaBaryon");
value = PyFloat_FromDouble(All.OmegaBaryon);
PyDict_SetItem(dict,key,value);
key = PyString_FromString("HubbleParam");
value = PyFloat_FromDouble(All.HubbleParam);
PyDict_SetItem(dict,key,value);
key = PyString_FromString("BoxSize");
value = PyFloat_FromDouble(All.BoxSize);
PyDict_SetItem(dict,key,value);
/* Output frequency */
key = PyString_FromString("TimeBetSnapshot");
value = PyFloat_FromDouble(All.TimeBetSnapshot);
PyDict_SetItem(dict,key,value);
key = PyString_FromString("TimeOfFirstSnapshot");
value = PyFloat_FromDouble(All.TimeOfFirstSnapshot);
PyDict_SetItem(dict,key,value);
key = PyString_FromString("CpuTimeBetRestartFile");
value = PyFloat_FromDouble(All.CpuTimeBetRestartFile);
PyDict_SetItem(dict,key,value);
key = PyString_FromString("TimeBetStatistics");
value = PyFloat_FromDouble(All.TimeBetStatistics);
PyDict_SetItem(dict,key,value);
key = PyString_FromString("NumFilesPerSnapshot");
value = PyInt_FromLong(All.NumFilesPerSnapshot);
PyDict_SetItem(dict,key,value);
key = PyString_FromString("NumFilesWrittenInParallel");
value = PyInt_FromLong(All.NumFilesWrittenInParallel);
PyDict_SetItem(dict,key,value);
/* Accuracy of time integration */
key = PyString_FromString("ErrTolIntAccuracy");
value = PyFloat_FromDouble(All.ErrTolIntAccuracy);
PyDict_SetItem(dict,key,value);
key = PyString_FromString("MaxRMSDisplacementFac");
value = PyFloat_FromDouble(All.MaxRMSDisplacementFac);
PyDict_SetItem(dict,key,value);
key = PyString_FromString("CourantFac");
value = PyFloat_FromDouble(All.CourantFac);
PyDict_SetItem(dict,key,value);
key = PyString_FromString("MaxSizeTimestep");
value = PyFloat_FromDouble(All.MaxSizeTimestep);
PyDict_SetItem(dict,key,value);
key = PyString_FromString("MinSizeTimestep");
value = PyFloat_FromDouble(All.MinSizeTimestep);
PyDict_SetItem(dict,key,value);
/* Tree algorithm, force accuracy, domain update frequency */
key = PyString_FromString("ErrTolTheta");
value = PyFloat_FromDouble(All.ErrTolTheta);
PyDict_SetItem(dict,key,value);
key = PyString_FromString("TypeOfOpeningCriterion");
value = PyInt_FromLong(All.TypeOfOpeningCriterion);
PyDict_SetItem(dict,key,value);
key = PyString_FromString("ErrTolForceAcc");
value = PyFloat_FromDouble(All.ErrTolForceAcc);
PyDict_SetItem(dict,key,value);
key = PyString_FromString("TreeDomainUpdateFrequency");
value = PyFloat_FromDouble(All.TreeDomainUpdateFrequency);
PyDict_SetItem(dict,key,value);
/* Further parameters of SPH */
key = PyString_FromString("DesNumNgb");
value = PyInt_FromLong(All.DesNumNgb);
PyDict_SetItem(dict,key,value);
key = PyString_FromString("MaxNumNgbDeviation");
value = PyInt_FromLong(All.MaxNumNgbDeviation);
PyDict_SetItem(dict,key,value);
key = PyString_FromString("ArtBulkViscConst");
value = PyInt_FromLong(All.ArtBulkViscConst);
PyDict_SetItem(dict,key,value);
key = PyString_FromString("InitGasTemp");
value = PyInt_FromLong(All.InitGasTemp);
PyDict_SetItem(dict,key,value);
key = PyString_FromString("MinGasTemp");
value = PyInt_FromLong(All.MinGasTemp);
PyDict_SetItem(dict,key,value);
/* Memory allocation */
key = PyString_FromString("PartAllocFactor");
value = PyFloat_FromDouble(All.PartAllocFactor);
PyDict_SetItem(dict,key,value);
key = PyString_FromString("TreeAllocFactor");
value = PyFloat_FromDouble(All.TreeAllocFactor);
PyDict_SetItem(dict,key,value);
key = PyString_FromString("BufferSize");
value = PyInt_FromLong(All.BufferSize);
PyDict_SetItem(dict,key,value);
/* System of units */
key = PyString_FromString("UnitLength_in_cm");
value = PyFloat_FromDouble(All.UnitLength_in_cm);
PyDict_SetItem(dict,key,value);
key = PyString_FromString("UnitMass_in_g");
value = PyFloat_FromDouble(All.UnitMass_in_g);
PyDict_SetItem(dict,key,value);
key = PyString_FromString("UnitVelocity_in_cm_per_s");
value = PyFloat_FromDouble(All.UnitVelocity_in_cm_per_s);
PyDict_SetItem(dict,key,value);
key = PyString_FromString("GravityConstantInternal");
value = PyFloat_FromDouble(All.GravityConstantInternal);
PyDict_SetItem(dict,key,value);
/* Softening lengths */
key = PyString_FromString("MinGasHsmlFractional");
value = PyFloat_FromDouble(All.MinGasHsmlFractional);
PyDict_SetItem(dict,key,value);
key = PyString_FromString("SofteningGas");
value = PyFloat_FromDouble(All.SofteningGas);
PyDict_SetItem(dict,key,value);
key = PyString_FromString("SofteningHalo");
value = PyFloat_FromDouble(All.SofteningHalo);
PyDict_SetItem(dict,key,value);
key = PyString_FromString("SofteningDisk");
value = PyFloat_FromDouble(All.SofteningDisk);
PyDict_SetItem(dict,key,value);
key = PyString_FromString("SofteningBulge");
value = PyFloat_FromDouble(All.SofteningBulge);
PyDict_SetItem(dict,key,value);
key = PyString_FromString("SofteningStars");
value = PyFloat_FromDouble(All.SofteningStars);
PyDict_SetItem(dict,key,value);
key = PyString_FromString("SofteningBndry");
value = PyFloat_FromDouble(All.SofteningBndry);
PyDict_SetItem(dict,key,value);
key = PyString_FromString("SofteningGasMaxPhys");
value = PyFloat_FromDouble(All.SofteningGasMaxPhys);
PyDict_SetItem(dict,key,value);
key = PyString_FromString("SofteningHaloMaxPhys");
value = PyFloat_FromDouble(All.SofteningHaloMaxPhys);
PyDict_SetItem(dict,key,value);
key = PyString_FromString("SofteningDiskMaxPhys");
value = PyFloat_FromDouble(All.SofteningDiskMaxPhys);
PyDict_SetItem(dict,key,value);
key = PyString_FromString("SofteningBulgeMaxPhys");
value = PyFloat_FromDouble(All.SofteningBulgeMaxPhys);
PyDict_SetItem(dict,key,value);
key = PyString_FromString("SofteningStarsMaxPhys");
value = PyFloat_FromDouble(All.SofteningStarsMaxPhys);
PyDict_SetItem(dict,key,value);
key = PyString_FromString("SofteningBndryMaxPhys");
value = PyFloat_FromDouble(All.SofteningBndryMaxPhys);
PyDict_SetItem(dict,key,value);
/*
key = PyString_FromString("OutputInfo");
value = PyFloat_FromDouble(All.OutputInfo);
PyDict_SetItem(dict,key,value);
key = PyString_FromString("PeanoHilbertOrder");
value = PyFloat_FromDouble(All.PeanoHilbertOrder);
PyDict_SetItem(dict,key,value);
*/
#ifdef SFR
PyDict_Merge(dict,sfr_GetParameters(),1);
#endif
return Py_BuildValue("O",dict);
}
static PyObject * gadget_SetParameters(PyObject *self, PyObject *args)
{
PyObject *dict;
PyObject *key;
PyObject *value;
/* here, we can have either arguments or dict directly */
if(PyDict_Check(args))
{
dict = args;
}
else
{
if (! PyArg_ParseTuple(args, "O",&dict))
return NULL;
}
/* check that it is a PyDictObject */
if(!PyDict_Check(dict))
{
PyErr_SetString(PyExc_AttributeError, "argument is not a dictionary.");
return NULL;
}
Py_ssize_t pos=0;
while(PyDict_Next(dict,&pos,&key,&value))
{
if(PyString_Check(key))
{
/* CPU time -limit */
if(strcmp(PyString_AsString(key), "TimeLimitCPU")==0)
{
if(PyInt_Check(value)||PyLong_Check(value)||PyFloat_Check(value))
All.TimeLimitCPU = PyFloat_AsDouble(value);
}
if(strcmp(PyString_AsString(key), "ResubmitOn")==0)
{
if(PyInt_Check(value)||PyLong_Check(value)||PyFloat_Check(value))
All.ResubmitOn = PyFloat_AsDouble(value);
}
if(strcmp(PyString_AsString(key), "ICFormat")==0)
{
if(PyInt_Check(value)||PyLong_Check(value)||PyFloat_Check(value))
All.ICFormat = PyInt_AsLong(value);
}
if(strcmp(PyString_AsString(key), "SnapFormat")==0)
{
if(PyInt_Check(value)||PyLong_Check(value)||PyFloat_Check(value))
All.SnapFormat = PyInt_AsLong(value);
}
if(strcmp(PyString_AsString(key), "ComovingIntegrationOn")==0)
{
if(PyInt_Check(value)||PyLong_Check(value)||PyFloat_Check(value))
All.ComovingIntegrationOn = PyInt_AsLong(value);
}
if(strcmp(PyString_AsString(key), "TypeOfTimestepCriterion")==0)
{
if(PyInt_Check(value)||PyLong_Check(value)||PyFloat_Check(value))
All.TypeOfTimestepCriterion = PyInt_AsLong(value);
}
if(strcmp(PyString_AsString(key), "OutputListOn")==0)
{
if(PyInt_Check(value)||PyLong_Check(value)||PyFloat_Check(value))
All.OutputListOn = PyInt_AsLong(value);
}
if(strcmp(PyString_AsString(key), "PeriodicBoundariesOn")==0)
{
if(PyInt_Check(value)||PyLong_Check(value)||PyFloat_Check(value))
All.PeriodicBoundariesOn = PyInt_AsLong(value);
}
/* Caracteristics of run */
if(strcmp(PyString_AsString(key), "TimeBegin")==0)
{
if(PyInt_Check(value)||PyLong_Check(value)||PyFloat_Check(value))
All.TimeBegin = PyFloat_AsDouble(value);
}
if(strcmp(PyString_AsString(key), "TimeMax")==0)
{
if(PyInt_Check(value)||PyLong_Check(value)||PyFloat_Check(value))
All.TimeMax = PyFloat_AsDouble(value);
}
if(strcmp(PyString_AsString(key), "Omega0")==0)
{
if(PyInt_Check(value)||PyLong_Check(value)||PyFloat_Check(value))
All.Omega0 = PyFloat_AsDouble(value);
}
if(strcmp(PyString_AsString(key), "OmegaLambda")==0)
{
if(PyInt_Check(value)||PyLong_Check(value)||PyFloat_Check(value))
All.OmegaLambda = PyFloat_AsDouble(value);
}
if(strcmp(PyString_AsString(key), "OmegaBaryon")==0)
{
if(PyInt_Check(value)||PyLong_Check(value)||PyFloat_Check(value))
All.OmegaBaryon = PyFloat_AsDouble(value);
}
if(strcmp(PyString_AsString(key), "HubbleParam")==0)
{
if(PyInt_Check(value)||PyLong_Check(value)||PyFloat_Check(value))
All.HubbleParam = PyFloat_AsDouble(value);
}
if(strcmp(PyString_AsString(key), "BoxSize")==0)
{
if(PyInt_Check(value)||PyLong_Check(value)||PyFloat_Check(value))
All.BoxSize = PyFloat_AsDouble(value);
}
/* Output frequency */
if(strcmp(PyString_AsString(key), "TimeBetSnapshot")==0)
{
if(PyInt_Check(value)||PyLong_Check(value)||PyFloat_Check(value))
All.TimeBetSnapshot = PyFloat_AsDouble(value);
}
if(strcmp(PyString_AsString(key), "TimeOfFirstSnapshot")==0)
{
if(PyInt_Check(value)||PyLong_Check(value)||PyFloat_Check(value))
All.TimeOfFirstSnapshot = PyFloat_AsDouble(value);
}
if(strcmp(PyString_AsString(key), "CpuTimeBetRestartFile")==0)
{
if(PyInt_Check(value)||PyLong_Check(value)||PyFloat_Check(value))
All.CpuTimeBetRestartFile = PyFloat_AsDouble(value);
}
if(strcmp(PyString_AsString(key), "TimeBetStatistics")==0)
{
if(PyInt_Check(value)||PyLong_Check(value)||PyFloat_Check(value))
All.TimeBetStatistics = PyFloat_AsDouble(value);
}
if(strcmp(PyString_AsString(key), "NumFilesPerSnapshot")==0)
{
if(PyInt_Check(value)||PyLong_Check(value)||PyFloat_Check(value))
All.NumFilesPerSnapshot = PyInt_AsLong(value);
}
if(strcmp(PyString_AsString(key), "NumFilesWrittenInParallel")==0)
{
if(PyInt_Check(value)||PyLong_Check(value)||PyFloat_Check(value))
All.NumFilesWrittenInParallel = PyInt_AsLong(value);
}
/* Accuracy of time integration */
if(strcmp(PyString_AsString(key), "ErrTolIntAccuracy")==0)
{
if(PyInt_Check(value)||PyLong_Check(value)||PyFloat_Check(value))
All.ErrTolIntAccuracy = PyFloat_AsDouble(value);
}
if(strcmp(PyString_AsString(key), "MaxRMSDisplacementFac")==0)
{
if(PyInt_Check(value)||PyLong_Check(value)||PyFloat_Check(value))
All.MaxRMSDisplacementFac = PyFloat_AsDouble(value);
}
if(strcmp(PyString_AsString(key), "CourantFac")==0)
{
if(PyInt_Check(value)||PyLong_Check(value)||PyFloat_Check(value))
All.CourantFac = PyFloat_AsDouble(value);
}
if(strcmp(PyString_AsString(key), "MaxSizeTimestep")==0)
{
if(PyInt_Check(value)||PyLong_Check(value)||PyFloat_Check(value))
All.MaxSizeTimestep = PyFloat_AsDouble(value);
}
if(strcmp(PyString_AsString(key), "MinSizeTimestep")==0)
{
if(PyInt_Check(value)||PyLong_Check(value)||PyFloat_Check(value))
All.MinSizeTimestep = PyFloat_AsDouble(value);
}
/* Tree algorithm, force accuracy, domain update frequency */
if(strcmp(PyString_AsString(key), "ErrTolTheta")==0)
{
if(PyInt_Check(value)||PyLong_Check(value)||PyFloat_Check(value))
All.ErrTolTheta = PyFloat_AsDouble(value);
}
if(strcmp(PyString_AsString(key), "TypeOfOpeningCriterion")==0)
{
if(PyInt_Check(value)||PyLong_Check(value)||PyFloat_Check(value))
All.TypeOfOpeningCriterion = PyInt_AsLong(value);
}
if(strcmp(PyString_AsString(key), "ErrTolForceAcc")==0)
{
if(PyInt_Check(value)||PyLong_Check(value)||PyFloat_Check(value))
All.ErrTolForceAcc = PyFloat_AsDouble(value);
}
if(strcmp(PyString_AsString(key), "TreeDomainUpdateFrequency")==0)
{
if(PyInt_Check(value)||PyLong_Check(value)||PyFloat_Check(value))
All.TreeDomainUpdateFrequency = PyFloat_AsDouble(value);
}
/* Further parameters of SPH */
if(strcmp(PyString_AsString(key), "DesNumNgb")==0)
{
if(PyInt_Check(value)||PyLong_Check(value)||PyFloat_Check(value))
All.DesNumNgb = PyInt_AsLong(value);
}
if(strcmp(PyString_AsString(key), "MaxNumNgbDeviation")==0)
{
if(PyInt_Check(value)||PyLong_Check(value)||PyFloat_Check(value))
All.MaxNumNgbDeviation = PyFloat_AsDouble(value);
}
if(strcmp(PyString_AsString(key), "ArtBulkViscConst")==0)
{
if(PyInt_Check(value)||PyLong_Check(value)||PyFloat_Check(value))
All.ArtBulkViscConst = PyInt_AsLong(value);
}
if(strcmp(PyString_AsString(key), "InitGasTemp")==0)
{
if(PyInt_Check(value)||PyLong_Check(value)||PyFloat_Check(value))
All.InitGasTemp = PyInt_AsLong(value);
}
if(strcmp(PyString_AsString(key), "MinGasTemp")==0)
{
if(PyInt_Check(value)||PyLong_Check(value)||PyFloat_Check(value))
All.MinGasTemp = PyInt_AsLong(value);
}
/* Memory allocation */
if(strcmp(PyString_AsString(key), "PartAllocFactor")==0)
{
if(PyInt_Check(value)||PyLong_Check(value)||PyFloat_Check(value))
All.PartAllocFactor = PyFloat_AsDouble(value);
}
if(strcmp(PyString_AsString(key), "TreeAllocFactor")==0)
{
if(PyInt_Check(value)||PyLong_Check(value)||PyFloat_Check(value))
All.TreeAllocFactor = PyFloat_AsDouble(value);
}
if(strcmp(PyString_AsString(key), "BufferSize")==0)
{
if(PyInt_Check(value)||PyLong_Check(value)||PyFloat_Check(value))
All.BufferSize = PyInt_AsLong(value);
}
/* System of units */
if(strcmp(PyString_AsString(key), "UnitLength_in_cm")==0)
{
if(PyInt_Check(value)||PyLong_Check(value)||PyFloat_Check(value))
All.UnitLength_in_cm = PyFloat_AsDouble(value);
}
if(strcmp(PyString_AsString(key), "UnitMass_in_g")==0)
{
if(PyInt_Check(value)||PyLong_Check(value)||PyFloat_Check(value))
All.UnitMass_in_g = PyFloat_AsDouble(value);
}
if(strcmp(PyString_AsString(key), "UnitVelocity_in_cm_per_s")==0)
{
if(PyInt_Check(value)||PyLong_Check(value)||PyFloat_Check(value))
All.UnitVelocity_in_cm_per_s = PyFloat_AsDouble(value);
}
if(strcmp(PyString_AsString(key), "GravityConstantInternal")==0)
{
if(PyInt_Check(value)||PyLong_Check(value)||PyFloat_Check(value))
All.GravityConstantInternal = PyFloat_AsDouble(value);
}
/* Softening lengths */
if(strcmp(PyString_AsString(key), "MinGasHsmlFractional")==0)
{
if(PyInt_Check(value)||PyLong_Check(value)||PyFloat_Check(value))
All.MinGasHsmlFractional = PyFloat_AsDouble(value);
}
if(strcmp(PyString_AsString(key), "SofteningGas")==0)
{
if(PyInt_Check(value)||PyLong_Check(value)||PyFloat_Check(value))
All.SofteningGas = PyFloat_AsDouble(value);
}
if(strcmp(PyString_AsString(key), "SofteningHalo")==0)
{
if(PyInt_Check(value)||PyLong_Check(value)||PyFloat_Check(value))
All.SofteningHalo = PyFloat_AsDouble(value);
}
if(strcmp(PyString_AsString(key), "SofteningDisk")==0)
{
if(PyInt_Check(value)||PyLong_Check(value)||PyFloat_Check(value))
All.SofteningDisk = PyFloat_AsDouble(value);
}
if(strcmp(PyString_AsString(key), "SofteningBulge")==0)
{
if(PyInt_Check(value)||PyLong_Check(value)||PyFloat_Check(value))
All.SofteningBulge = PyFloat_AsDouble(value);
}
if(strcmp(PyString_AsString(key), "SofteningStars")==0)
{
if(PyInt_Check(value)||PyLong_Check(value)||PyFloat_Check(value))
All.SofteningStars = PyFloat_AsDouble(value);
}
if(strcmp(PyString_AsString(key), "SofteningBndry")==0)
{
if(PyInt_Check(value)||PyLong_Check(value)||PyFloat_Check(value))
All.SofteningBndry = PyFloat_AsDouble(value);
}
if(strcmp(PyString_AsString(key), "SofteningGasMaxPhys")==0)
{
if(PyInt_Check(value)||PyLong_Check(value)||PyFloat_Check(value))
All.SofteningGasMaxPhys = PyFloat_AsDouble(value);
}
if(strcmp(PyString_AsString(key), "SofteningHaloMaxPhys")==0)
{
if(PyInt_Check(value)||PyLong_Check(value)||PyFloat_Check(value))
All.SofteningHaloMaxPhys = PyFloat_AsDouble(value);
}
if(strcmp(PyString_AsString(key), "SofteningDiskMaxPhys")==0)
{
if(PyInt_Check(value)||PyLong_Check(value)||PyFloat_Check(value))
All.SofteningDiskMaxPhys = PyFloat_AsDouble(value);
}
if(strcmp(PyString_AsString(key), "SofteningBulgeMaxPhys")==0)
{
if(PyInt_Check(value)||PyLong_Check(value)||PyFloat_Check(value))
All.SofteningBulgeMaxPhys = PyFloat_AsDouble(value);
}
if(strcmp(PyString_AsString(key), "SofteningStarsMaxPhys")==0)
{
if(PyInt_Check(value)||PyLong_Check(value)||PyFloat_Check(value))
All.SofteningStarsMaxPhys = PyFloat_AsDouble(value);
}
if(strcmp(PyString_AsString(key), "SofteningBndryMaxPhys")==0)
{
if(PyInt_Check(value)||PyLong_Check(value)||PyFloat_Check(value))
All.SofteningBndryMaxPhys = PyFloat_AsDouble(value);
}
/* FoF */
#ifdef FOF
if(strcmp(PyString_AsString(key), "FoF_Density")==0)
{
if(PyInt_Check(value)||PyLong_Check(value)||PyFloat_Check(value))
All.FoF_Density = PyFloat_AsDouble(value);
}
if(strcmp(PyString_AsString(key), "FoF_ThresholdDensityFactor")==0)
{
if(PyInt_Check(value)||PyLong_Check(value)||PyFloat_Check(value))
All.FoF_ThresholdDensityFactor = PyFloat_AsDouble(value);
}
if(strcmp(PyString_AsString(key), "FoF_MinHeadDensityFactor")==0)
{
if(PyInt_Check(value)||PyLong_Check(value)||PyFloat_Check(value))
All.FoF_MinHeadDensityFactor = PyFloat_AsDouble(value);
}
if(strcmp(PyString_AsString(key), "FoF_MinGroupMembers")==0)
{
if(PyInt_Check(value)||PyLong_Check(value)||PyFloat_Check(value))
All.FoF_MinGroupMembers = PyInt_AsLong(value);
}
if(strcmp(PyString_AsString(key), "FoF_MinGroupMass")==0)
{
if(PyInt_Check(value)||PyLong_Check(value)||PyFloat_Check(value))
All.FoF_MinGroupMass = PyFloat_AsDouble(value);
}
if(strcmp(PyString_AsString(key), "FoF_HsmlSearchRadiusFactor")==0)
{
if(PyInt_Check(value)||PyLong_Check(value)||PyFloat_Check(value))
All.FoF_HsmlSearchRadiusFactor = PyFloat_AsDouble(value);
}
-
+ if(strcmp(PyString_AsString(key), "FoF_StarFormationType")==0)
+ {
+ if(PyInt_Check(value)||PyLong_Check(value)||PyFloat_Check(value))
+ All.FoF_StarFormationType = PyInt_AsLong(value);
+ }
#endif
}
}
#ifdef SFR
sfr_SetParameters(self,args);
#endif
return Py_BuildValue("i",1);
}
static PyObject *
gadget_check_parser(PyObject *self, PyObject *args, PyObject *keywds)
{
int voltage;
char *state = "a stiff";
char *action = "voom";
char *type = "Norwegian Blue";
static char *kwlist[] = {"voltage", "state", "action", "type", NULL};
if (!PyArg_ParseTupleAndKeywords(args, keywds, "i|sss", kwlist,
&voltage, &state, &action, &type))
return NULL;
printf("-- This parrot wouldn't %s if you put %i Volts through it.\n",
action, voltage);
printf("-- Lovely plumage, the %s -- It's %s!\n", type, state);
Py_INCREF(Py_None);
return Py_None;
}
static PyObject *gadget_Free(PyObject *self, PyObject *args, PyObject *kwds)
{
free_memory();
ngb_treefree();
force_treefree();
free(Exportflag );
free(DomainStartList);
free(DomainEndList);
free(TopNodes);
free(DomainWork);
free(DomainCount);
free(DomainCountSph);
free(DomainTask);
free(DomainNodeIndex);
free(DomainTreeNodeLen);
free(DomainHmax);
free(DomainMoment);
free(CommBuffer);
gsl_rng_free(random_generator);
return Py_BuildValue("i",1);
}
static PyObject *gadget_Start(PyObject *self, PyObject *args, PyObject *kwds)
{
/* define argc, argv */
/*
if(argc < 2)
{
if(ThisTask == 0)
{
printf("Parameters are missing.\n");
printf("Call with <ParameterFile> [<RestartFlag>]\n");
}
endrun(0);
}
strcpy(ParameterFile, argv[1]);
if(argc >= 3)
RestartFlag = atoi(argv[2]);
else
RestartFlag = 0;
*/
strcpy(ParameterFile,"params");
RestartFlag=0;
begrun(); /* set-up run */
return Py_BuildValue("i",1);
}
static PyObject *gadget_LoadParticles(PyObject *self, PyObject *args, PyObject *kwds)
{
int i,j;
size_t bytes;
PyArrayObject *ntype=Py_None;
PyArrayObject *pos=Py_None;
PyArrayObject *vel=Py_None;
PyArrayObject *mass=Py_None;
PyArrayObject *num=Py_None;
PyArrayObject *tpe=Py_None;
PyArrayObject *u=Py_None;
PyArrayObject *rho=Py_None;
static char *kwlist[] = {"npart", "pos","vel","mass","num","tpe","u","rho", NULL};
if (! PyArg_ParseTupleAndKeywords(args,kwds, "OOOOOO|OO",kwlist,&ntype,&pos,&vel,&mass,&num,&tpe,&u,&rho ))
return NULL;
/* check type */
if (!(PyArray_Check(pos)))
{
PyErr_SetString(PyExc_ValueError,"aruments 2 must be array.");
return NULL;
}
/* check type */
if (!(PyArray_Check(mass)))
{
PyErr_SetString(PyExc_ValueError,"aruments 3 must be array.");
return NULL;
}
/* check dimension */
if ( (pos->nd!=2))
{
PyErr_SetString(PyExc_ValueError,"Dimension of argument 2 must be 2.");
return NULL;
}
/* check dimension */
if ( (mass->nd!=1))
{
PyErr_SetString(PyExc_ValueError,"Dimension of argument 3 must be 1.");
return NULL;
}
/* check size */
if ( (pos->dimensions[1]!=3))
{
PyErr_SetString(PyExc_ValueError,"First size of argument must be 3.");
return NULL;
}
/* check size */
if ( (pos->dimensions[0]!=mass->dimensions[0]))
{
PyErr_SetString(PyExc_ValueError,"Size of argument 2 must be similar to argument 3.");
return NULL;
}
/* ensure double */
ntype = TO_INT(ntype);
pos = TO_FLOAT(pos);
vel = TO_FLOAT(vel);
mass = TO_FLOAT(mass);
num = TO_INT(num);
tpe = TO_INT(tpe);
/* optional variables */
if (u!=Py_None)
u = TO_FLOAT(u);
if (rho!=Py_None)
rho = TO_FLOAT(rho);
/***************************************
* some inits *
/***************************************/
RestartFlag = 0;
Begrun1();
/***************************************
* LOAD PARTICLES *
/***************************************/
NumPart = 0;
N_gas = *(int*) (ntype->data + 0*(ntype->strides[0]));
for (i = 0; i < 6; i++)
NumPart += *(int*) (ntype->data + i*(ntype->strides[0]));
if (NumPart!=pos->dimensions[0])
{
PyErr_SetString(PyExc_ValueError,"Numpart != pos->dimensions[0].");
return NULL;
}
MPI_Allreduce(&NumPart, &All.TotNumPart, 1, MPI_INT, MPI_SUM, MPI_COMM_WORLD);
MPI_Allreduce(&N_gas, &All.TotN_gas, 1, MPI_INT, MPI_SUM, MPI_COMM_WORLD);
All.MaxPart = All.PartAllocFactor * (All.TotNumPart / NTask);
All.MaxPartSph = All.PartAllocFactor * (All.TotN_gas / NTask);
#ifdef STELLAR_PROP
All.MaxPartStars = All.PartAllocFactor * (All.TotN_stars / NTask); /* existing star particles */
#ifdef SFR
All.MaxPartStars = All.MaxPartStars + All.StarFormationNStarsFromGas*All.MaxPartSph*All.StarsAllocFactor; /* potental star particles */
#endif
#endif
/*********************/
/* allocate memory */
/*********************/
allocate_memory();
/*********************/
/* init P */
/*********************/
for (i = 0; i < NumPart; i++)
{
P[i].Pos[0] = *(float *) (pos->data + i*(pos->strides[0]) + 0*pos->strides[1]);
P[i].Pos[1] = *(float *) (pos->data + i*(pos->strides[0]) + 1*pos->strides[1]);
P[i].Pos[2] = *(float *) (pos->data + i*(pos->strides[0]) + 2*pos->strides[1]);
P[i].Vel[0] = *(float *) (vel->data + i*(vel->strides[0]) + 0*vel->strides[1]);
P[i].Vel[1] = *(float *) (vel->data + i*(vel->strides[0]) + 1*vel->strides[1]);
P[i].Vel[2] = *(float *) (vel->data + i*(vel->strides[0]) + 2*vel->strides[1]);
P[i].Mass = *(float *) (mass->data + i*(mass->strides[0]));
P[i].ID = *(unsigned int *) (num->data + i*(num->strides[0]));
P[i].Type = *(int *) (tpe->data + i*(tpe->strides[0]));
//P[i].Active = 1;
//printf(" P.ID=%d%09d\n", (int) (P[i].ID / 1000000000), (int) (P[i].ID % 1000000000));
#ifdef TESSEL
P[i].iPref = -1;
#endif
}
/*********************/
/* init SphP */
/*********************/
if (u!=Py_None)
for (i = 0; i < NumPart; i++)
{
SphP[i].Entropy = *(float *) (u->data + i*(u->strides[0]));
//#ifndef ISOTHERM_EQS
// SphP[i].Entropy = GAMMA_MINUS1 * SphP[i].Entropy / pow(SphP[i].Density / a3, GAMMA_MINUS1);
//#endif
}
if (rho!=Py_None)
for (i = 0; i < NumPart; i++)
{
SphP[i].Density = *(float *) (rho->data + i*(rho->strides[0]));
}
/***************************************
* END LOAD PARTICLES *
/***************************************/
/***************************************
* finish inits *
/***************************************/
Begrun2();
/***************************************
* free memory *
/***************************************/
/* free the memory allocated,
because these vectors where casted
and their memory is now handeled by the C part */
Py_DECREF(ntype);
Py_DECREF(pos);
Py_DECREF(vel);
Py_DECREF(mass);
Py_DECREF(num);
Py_DECREF(tpe);
/* optional variables */
if (u!=Py_None)
Py_DECREF(u);
if (rho!=Py_None)
Py_DECREF(rho);
return Py_BuildValue("i",1);
}
static PyObject *gadget_LoadParticlesQ(PyObject *self, PyObject *args, PyObject *kwds)
{
int i,j;
size_t bytes;
PyArrayObject *ntype,*pos,*vel,*mass,*num,*tpe;
static char *kwlist[] = {"npart", "pos","vel","mass","num","tpe", NULL};
if (! PyArg_ParseTupleAndKeywords(args, kwds, "|OOOOOO",kwlist,&ntype,&pos,&vel,&mass,&num,&tpe))
return Py_BuildValue("i",1);
/* check type */
if (!(PyArray_Check(pos)))
{
PyErr_SetString(PyExc_ValueError,"aruments 1 must be array.");
return NULL;
}
/* check type */
if (!(PyArray_Check(mass)))
{
PyErr_SetString(PyExc_ValueError,"aruments 2 must be array.");
return NULL;
}
/* check dimension */
if ( (pos->nd!=2))
{
PyErr_SetString(PyExc_ValueError,"Dimension of argument 1 must be 2.");
return NULL;
}
/* check dimension */
if ( (mass->nd!=1))
{
PyErr_SetString(PyExc_ValueError,"Dimension of argument 2 must be 1.");
return NULL;
}
/* check size */
if ( (pos->dimensions[1]!=3))
{
PyErr_SetString(PyExc_ValueError,"First size of argument must be 3.");
return NULL;
}
/* check size */
if ( (pos->dimensions[0]!=mass->dimensions[0]))
{
PyErr_SetString(PyExc_ValueError,"Size of argument 1 must be similar to argument 2.");
return NULL;
}
/* ensure double */
ntype = TO_INT(ntype);
pos = TO_FLOAT(pos);
vel = TO_FLOAT(vel);
mass = TO_FLOAT(mass);
num = TO_FLOAT(num);
tpe = TO_FLOAT(tpe);
/***************************************
* some inits *
/***************************************/
allocate_commbuffersQ();
/***************************************
* LOAD PARTILES *
/***************************************/
NumPartQ = 0;
N_gasQ = *(int*) (ntype->data + 0*(ntype->strides[0]));
for (i = 0; i < 6; i++)
NumPartQ += *(int*) (ntype->data + i*(ntype->strides[0]));
if (NumPartQ!=pos->dimensions[0])
{
PyErr_SetString(PyExc_ValueError,"NumpartQ != pos->dimensions[0].");
return NULL;
}
MPI_Allreduce(&NumPartQ, &All.TotNumPartQ, 1, MPI_INT, MPI_SUM, MPI_COMM_WORLD);
MPI_Allreduce(&N_gasQ, &All.TotN_gasQ, 1, MPI_INT, MPI_SUM, MPI_COMM_WORLD);
All.MaxPartQ = All.PartAllocFactor * (All.TotNumPartQ / NTask);
All.MaxPartSphQ = All.PartAllocFactor * (All.TotN_gasQ / NTask);
/*********************/
/* allocate Q */
/*********************/
if(!(Q = malloc(bytes = All.MaxPartQ * sizeof(struct particle_data))))
{
printf("failed to allocate memory for `Q' (%g MB).\n", bytes / (1024.0 * 1024.0));
endrun(1);
}
if(!(SphQ = malloc(bytes = All.MaxPartSphQ * sizeof(struct sph_particle_data))))
{
printf("failed to allocate memory for `SphQ' (%g MB) %d.\n", bytes / (1024.0 * 1024.0), sizeof(struct sph_particle_data));
endrun(1);
}
/*********************/
/* init P */
/*********************/
for (i = 0; i < NumPartQ; i++)
{
Q[i].Pos[0] = *(float *) (pos->data + i*(pos->strides[0]) + 0*pos->strides[1]);
Q[i].Pos[1] = *(float *) (pos->data + i*(pos->strides[0]) + 1*pos->strides[1]);
Q[i].Pos[2] = *(float *) (pos->data + i*(pos->strides[0]) + 2*pos->strides[1]);
Q[i].Vel[0] = *(float *) (vel->data + i*(vel->strides[0]) + 0*vel->strides[1]);
Q[i].Vel[1] = *(float *) (vel->data + i*(vel->strides[0]) + 1*vel->strides[1]);
Q[i].Vel[2] = *(float *) (vel->data + i*(vel->strides[0]) + 2*vel->strides[1]);
Q[i].Mass = *(float *) (mass->data + i*(mass->strides[0]));
Q[i].ID = *(unsigned int *) (num->data + i*(num->strides[0]));
Q[i].Type = *(int *) (tpe->data + i*(tpe->strides[0]));
//Q[i].Active = 1;
}
/***************************************
* END LOAD PARTILES *
/***************************************/
domain_DecompositionQ();
/***************************************
* finish inits *
/***************************************/
return Py_BuildValue("i",1);
}
static PyObject *gadget_AllPotential(PyObject *self)
{
compute_potential();
return Py_BuildValue("i",1);
}
static PyObject * gadget_GetAllPotential(PyObject* self)
{
PyArrayObject *pot;
npy_intp ld[1];
int i;
ld[0] = NumPart;
pot = (PyArrayObject *) PyArray_SimpleNew(1,ld,PyArray_FLOAT);
for (i = 0; i < pot->dimensions[0]; i++)
{
*(float *) (pot->data + i*(pot->strides[0])) = P[i].Potential;
}
return PyArray_Return(pot);
}
static PyObject *gadget_AllAcceleration(PyObject *self)
{
NumForceUpdate = NumPart;
gravity_tree();
return Py_BuildValue("i",1);
}
static PyObject * gadget_GetAllAcceleration(PyObject* self)
{
PyArrayObject *acc;
npy_intp ld[2];
int i;
ld[0] = NumPart;
ld[1] = 3;
acc = (PyArrayObject *) PyArray_SimpleNew(2,ld,PyArray_FLOAT);
for (i = 0; i < acc->dimensions[0]; i++)
{
*(float *) (acc->data + i*(acc->strides[0]) + 0*acc->strides[1]) = P[i].GravAccel[0];
*(float *) (acc->data + i*(acc->strides[0]) + 1*acc->strides[1]) = P[i].GravAccel[1];
*(float *) (acc->data + i*(acc->strides[0]) + 2*acc->strides[1]) = P[i].GravAccel[2];
}
return PyArray_Return(acc);
}
static PyObject *gadget_GetAllDensities(PyObject* self)
{
PyArrayObject *rho;
npy_intp ld[1];
int i;
ld[0] = N_gas;
rho = (PyArrayObject *) PyArray_SimpleNew(1,ld,PyArray_FLOAT);
for (i = 0; i < rho->dimensions[0]; i++)
{
*(float *) (rho->data + i*(rho->strides[0])) = SphP[i].Density;
}
return PyArray_Return(rho);
}
#ifdef DENSITY_INDEPENDENT_SPH
static PyObject *gadget_GetAllEgyWtDensities(PyObject* self)
{
PyArrayObject *rho;
npy_intp ld[1];
int i;
ld[0] = N_gas;
rho = (PyArrayObject *) PyArray_SimpleNew(1,ld,PyArray_FLOAT);
for (i = 0; i < rho->dimensions[0]; i++)
{
*(float *) (rho->data + i*(rho->strides[0])) = SphP[i].EgyWtDensity;
}
return PyArray_Return(rho);
}
#endif
static PyObject *gadget_GetAllHsml(PyObject* self)
{
PyArrayObject *hsml;
npy_intp ld[1];
int i;
ld[0] = N_gas;
hsml = (PyArrayObject *) PyArray_SimpleNew(1,ld,PyArray_FLOAT);
for (i = 0; i < hsml->dimensions[0]; i++)
{
*(float *) (hsml->data + i*(hsml->strides[0])) = SphP[i].Hsml;
}
return PyArray_Return(hsml);
}
static PyObject *gadget_GetAllPositions(PyObject* self)
{
PyArrayObject *pos;
npy_intp ld[2];
int i;
ld[0] = NumPart;
ld[1] = 3;
pos = (PyArrayObject *) PyArray_SimpleNew(2,ld,PyArray_FLOAT);
for (i = 0; i < pos->dimensions[0]; i++)
{
*(float *) (pos->data + i*(pos->strides[0]) + 0*pos->strides[1]) = P[i].Pos[0];
*(float *) (pos->data + i*(pos->strides[0]) + 1*pos->strides[1]) = P[i].Pos[1];
*(float *) (pos->data + i*(pos->strides[0]) + 2*pos->strides[1]) = P[i].Pos[2];
}
return PyArray_Return(pos);
}
static PyObject *gadget_GetAllVelocities(PyObject* self)
{
PyArrayObject *vel;
npy_intp ld[2];
int i;
ld[0] = NumPart;
ld[1] = 3;
vel = (PyArrayObject *) PyArray_SimpleNew(2,ld,PyArray_FLOAT);
for (i = 0; i < vel->dimensions[0]; i++)
{
*(float *) (vel->data + i*(vel->strides[0]) + 0*vel->strides[1]) = P[i].Vel[0];
*(float *) (vel->data + i*(vel->strides[0]) + 1*vel->strides[1]) = P[i].Vel[1];
*(float *) (vel->data + i*(vel->strides[0]) + 2*vel->strides[1]) = P[i].Vel[2];
}
return PyArray_Return(vel);
}
static PyObject *gadget_GetAllMasses(PyObject* self)
{
PyArrayObject *mass;
npy_intp ld[1];
int i;
ld[0] = NumPart;
mass = (PyArrayObject *) PyArray_SimpleNew(1,ld,PyArray_FLOAT);
for (i = 0; i < mass->dimensions[0]; i++)
{
*(float *) (mass->data + i*(mass->strides[0])) = P[i].Mass;
}
return PyArray_Return(mass);
}
static PyObject *gadget_GetAllEntropy(PyObject* self)
{
PyArrayObject *entropy;
npy_intp ld[1];
int i;
ld[0] = NumPart;
entropy = (PyArrayObject *) PyArray_SimpleNew(1,ld,PyArray_FLOAT);
for (i = 0; i < entropy->dimensions[0]; i++)
{
*(float *) (entropy->data + i*(entropy->strides[0])) = SphP[i].Entropy;
}
return PyArray_Return(entropy);
}
static PyObject *gadget_GetAllEnergySpec(PyObject* self)
{
PyArrayObject *energy;
npy_intp ld[1];
int i;
double a3inv;
ld[0] = NumPart;
energy = (PyArrayObject *) PyArray_SimpleNew(1,ld,PyArray_FLOAT);
if(All.ComovingIntegrationOn)
{
a3inv = 1 / (All.Time * All.Time * All.Time);
}
else
a3inv = 1;
for (i = 0; i < energy->dimensions[0]; i++)
{
#ifdef ISOTHERM_EQS
*(float *) (energy->data + i*(energy->strides[0])) = SphP[i].Entropy;
#else
a3inv = 1.;
#ifdef DENSITY_INDEPENDENT_SPH
*(float *) (energy->data + i*(energy->strides[0])) = dmax(All.MinEgySpec,SphP[i].Entropy / GAMMA_MINUS1 * pow(SphP[i].EgyWtDensity * a3inv, GAMMA_MINUS1));
#else
*(float *) (energy->data + i*(energy->strides[0])) = dmax(All.MinEgySpec,SphP[i].Entropy / GAMMA_MINUS1 * pow(SphP[i].Density * a3inv, GAMMA_MINUS1));
#endif
#endif
}
return PyArray_Return(energy);
}
static PyObject *gadget_GetAllID(PyObject* self)
{
PyArrayObject *id;
npy_intp ld[1];
int i;
ld[0] = NumPart;
id = (PyArrayObject *) PyArray_SimpleNew(1,ld,PyArray_INT);
for (i = 0; i < id->dimensions[0]; i++)
{
*(int *) (id->data + i*(id->strides[0])) = P[i].ID;
}
return PyArray_Return(id);
}
static PyObject *gadget_GetAllTypes(PyObject* self)
{
PyArrayObject *type;
npy_intp ld[1];
int i;
ld[0] = NumPart;
type = (PyArrayObject *) PyArray_SimpleNew(1,ld,PyArray_INT);
for (i = 0; i < type->dimensions[0]; i++)
{
*(int *) (type->data + i*(type->strides[0])) = P[i].Type;
}
return PyArray_Return(type);
}
#ifdef CHIMIE
static PyObject *gadget_GetAllMetal(PyObject* self)
{
PyArrayObject *metal;
npy_intp ld[2];
int i,j;
ld[0] = NumPart;
ld[1] = NELEMENTS;
metal = (PyArrayObject *) PyArray_SimpleNew(2,ld,PyArray_FLOAT);
for (i = 0; i < metal->dimensions[0]; i++)
{
for (j=0;j<NELEMENTS;j++)
*(float *) (metal->data + i*(metal->strides[0]) + j*metal->strides[1]) = SphP[i].Metal[0];
}
return PyArray_Return(metal);
}
#endif
static PyObject *gadget_GetAllPositionsQ(PyObject* self)
{
PyArrayObject *pos;
npy_intp ld[2];
int i;
ld[0] = NumPartQ;
ld[1] = 3;
pos = (PyArrayObject *) PyArray_SimpleNew(2,ld,PyArray_FLOAT);
for (i = 0; i < pos->dimensions[0]; i++)
{
*(float *) (pos->data + i*(pos->strides[0]) + 0*pos->strides[1]) = Q[i].Pos[0];
*(float *) (pos->data + i*(pos->strides[0]) + 1*pos->strides[1]) = Q[i].Pos[1];
*(float *) (pos->data + i*(pos->strides[0]) + 2*pos->strides[1]) = Q[i].Pos[2];
}
return PyArray_Return(pos);
}
static PyObject *gadget_GetAllVelocitiesQ(PyObject* self)
{
PyArrayObject *vel;
npy_intp ld[2];
int i;
ld[0] = NumPartQ;
ld[1] = 3;
vel = (PyArrayObject *) PyArray_SimpleNew(2,ld,PyArray_FLOAT);
for (i = 0; i < vel->dimensions[0]; i++)
{
*(float *) (vel->data + i*(vel->strides[0]) + 0*vel->strides[1]) = Q[i].Vel[0];
*(float *) (vel->data + i*(vel->strides[0]) + 1*vel->strides[1]) = Q[i].Vel[1];
*(float *) (vel->data + i*(vel->strides[0]) + 2*vel->strides[1]) = Q[i].Vel[2];
}
return PyArray_Return(vel);
}
static PyObject *gadget_GetAllMassesQ(PyObject* self)
{
PyArrayObject *mass;
npy_intp ld[1];
int i;
ld[0] = NumPartQ;
mass = (PyArrayObject *) PyArray_SimpleNew(1,ld,PyArray_FLOAT);
for (i = 0; i < mass->dimensions[0]; i++)
{
*(float *) (mass->data + i*(mass->strides[0])) = Q[i].Mass;
}
return PyArray_Return(mass);
}
static PyObject *gadget_GetAllIDQ(PyObject* self)
{
PyArrayObject *id;
npy_intp ld[1];
int i;
ld[0] = NumPartQ;
id = (PyArrayObject *) PyArray_SimpleNew(1,ld,PyArray_INT);
for (i = 0; i < id->dimensions[0]; i++)
{
*(float *) (id->data + i*(id->strides[0])) = Q[i].ID;
}
return PyArray_Return(id);
}
static PyObject *gadget_GetAllTypesQ(PyObject* self)
{
PyArrayObject *type;
npy_intp ld[1];
int i;
ld[0] = NumPartQ;
type = (PyArrayObject *) PyArray_SimpleNew(1,ld,PyArray_INT);
for (i = 0; i < type->dimensions[0]; i++)
{
*(int *) (type->data + i*(type->strides[0])) = Q[i].Type;
}
return PyArray_Return(type);
}
static PyObject *gadget_GetPos(PyObject *self, PyObject *args, PyObject *kwds)
{
int i,j;
size_t bytes;
PyArrayObject *pos;
if (! PyArg_ParseTuple(args, "O",&pos))
return PyString_FromString("error : GetPos");
for (i = 0; i < pos->dimensions[0]; i++)
{
*(float *) (pos->data + i*(pos->strides[0]) + 0*pos->strides[1]) = P[i].Pos[0];
*(float *) (pos->data + i*(pos->strides[0]) + 1*pos->strides[1]) = P[i].Pos[1];
*(float *) (pos->data + i*(pos->strides[0]) + 2*pos->strides[1]) = P[i].Pos[2];
}
//return PyArray_Return(Py_None);
return Py_BuildValue("i",1);
}
static PyObject * gadget_Potential(PyObject* self, PyObject *args)
{
PyArrayObject *pos;
float eps;
if (! PyArg_ParseTuple(args, "Of",&pos,&eps))
return PyString_FromString("error");
PyArrayObject *pot;
int i;
npy_intp ld[1];
int input_dimension;
size_t bytes;
input_dimension =pos->nd;
if (input_dimension != 2)
PyErr_SetString(PyExc_ValueError,"dimension of first argument must be 2");
pos = TO_FLOAT(pos);
/* create a NumPy object */
ld[0]=pos->dimensions[0];
pot = (PyArrayObject *) PyArray_SimpleNew(1,ld,PyArray_FLOAT);
NumPartQ = pos->dimensions[0];
All.ForceSofteningQ = eps;
if(!(Q = malloc(bytes = NumPartQ * sizeof(struct particle_data))))
{
printf("failed to allocate memory for `Q' (%g MB).\n", bytes / (1024.0 * 1024.0));
endrun(1);
}
if(!(SphQ = malloc(bytes = NumPartQ * sizeof(struct sph_particle_data))))
{
printf("failed to allocate memory for `SphQ' (%g MB).\n", bytes / (1024.0 * 1024.0));
endrun(1);
}
for (i = 0; i < pos->dimensions[0]; i++)
{
Q[i].Pos[0] = *(float *) (pos->data + i*(pos->strides[0]) + 0*pos->strides[1]);
Q[i].Pos[1] = *(float *) (pos->data + i*(pos->strides[0]) + 1*pos->strides[1]);
Q[i].Pos[2] = *(float *) (pos->data + i*(pos->strides[0]) + 2*pos->strides[1]);
Q[i].Type = 0;
Q[i].Mass = 0;
Q[i].Potential = 0;
}
compute_potential_sub();
for (i = 0; i < pos->dimensions[0]; i++)
{
*(float *)(pot->data + i*(pot->strides[0])) = Q[i].Potential;
}
free(Q);
free(SphQ);
return PyArray_Return(pot);
}
static PyObject * gadget_Acceleration(PyObject* self, PyObject *args)
{
PyArrayObject *pos;
float eps;
if (! PyArg_ParseTuple(args, "Of",&pos,&eps))
return PyString_FromString("error");
PyArrayObject *acc;
int i;
int input_dimension;
size_t bytes;
input_dimension =pos->nd;
if (input_dimension != 2)
PyErr_SetString(PyExc_ValueError,"dimension of first argument must be 2");
pos = TO_FLOAT(pos);
/* create a NumPy object */
acc = (PyArrayObject *) PyArray_SimpleNew(pos->nd,pos->dimensions,PyArray_FLOAT);
NumPartQ = pos->dimensions[0];
All.ForceSofteningQ = eps;
if(!(Q = malloc(bytes = NumPartQ * sizeof(struct particle_data))))
{
printf("failed to allocate memory for `Q' (%g MB).\n", bytes / (1024.0 * 1024.0));
endrun(1);
}
if(!(SphQ = malloc(bytes = NumPartQ * sizeof(struct sph_particle_data))))
{
printf("failed to allocate memory for `SphQ' (%g MB).\n", bytes / (1024.0 * 1024.0));
endrun(1);
}
for (i = 0; i < pos->dimensions[0]; i++)
{
Q[i].Pos[0] = *(float *) (pos->data + i*(pos->strides[0]) + 0*pos->strides[1]);
Q[i].Pos[1] = *(float *) (pos->data + i*(pos->strides[0]) + 1*pos->strides[1]);
Q[i].Pos[2] = *(float *) (pos->data + i*(pos->strides[0]) + 2*pos->strides[1]);
Q[i].Type = 0;
Q[i].Mass = 0;
Q[i].GravAccel[0] = 0;
Q[i].GravAccel[1] = 0;
Q[i].GravAccel[2] = 0;
}
gravity_tree_sub();
for (i = 0; i < pos->dimensions[0]; i++)
{
*(float *)(acc->data + i*(acc->strides[0]) + 0*acc->strides[1]) = Q[i].GravAccel[0];
*(float *)(acc->data + i*(acc->strides[0]) + 1*acc->strides[1]) = Q[i].GravAccel[1];
*(float *)(acc->data + i*(acc->strides[0]) + 2*acc->strides[1]) = Q[i].GravAccel[2];
}
free(Q);
free(SphQ);
return PyArray_Return(acc);
}
static PyObject * gadget_InitHsml(PyObject* self, PyObject *args)
{
PyArrayObject *pos,*hsml;
if (! PyArg_ParseTuple(args, "OO",&pos,&hsml))
return PyString_FromString("error");
int i;
int input_dimension;
size_t bytes;
int ld[1];
PyArrayObject *vden,*vhsml;
input_dimension =pos->nd;
if (input_dimension != 2)
PyErr_SetString(PyExc_ValueError,"dimension of first argument must be 2");
if (pos->dimensions[0] != hsml->dimensions[0])
PyErr_SetString(PyExc_ValueError,"pos and hsml must have the same dimension.");
pos = TO_FLOAT(pos);
hsml = TO_FLOAT(hsml);
/* create a NumPy object */
ld[0]=pos->dimensions[0];
vden = (PyArrayObject *) PyArray_SimpleNew(1,pos->dimensions,pos->descr->type_num);
vhsml = (PyArrayObject *) PyArray_SimpleNew(1,pos->dimensions,pos->descr->type_num);
NumPartQ = pos->dimensions[0];
N_gasQ = NumPartQ;
All.Ti_Current=1; /* need to flag active particles */
if(!(Q = malloc(bytes = NumPartQ * sizeof(struct particle_data))))
{
printf("failed to allocate memory for `Q' (%g MB).\n", bytes / (1024.0 * 1024.0));
endrun(1);
}
if(!(SphQ = malloc(bytes = NumPartQ * sizeof(struct sph_particle_data))))
{
printf("failed to allocate memory for `SphQ' (%g MB).\n", bytes / (1024.0 * 1024.0));
endrun(1);
}
for (i = 0; i < pos->dimensions[0]; i++)
{
Q[i].Pos[0] = *(float *) (pos->data + i*(pos->strides[0]) + 0*pos->strides[1]);
Q[i].Pos[1] = *(float *) (pos->data + i*(pos->strides[0]) + 1*pos->strides[1]);
Q[i].Pos[2] = *(float *) (pos->data + i*(pos->strides[0]) + 2*pos->strides[1]);
SphQ[i].Hsml = *(float *) (hsml->data + i*(hsml->strides[0]));
}
setup_smoothinglengths_sub();
for (i = 0; i < pos->dimensions[0]; i++)
{
*(float *)(vhsml->data + i*(vhsml->strides[0])) = SphQ[i].Hsml;
*(float *)(vden->data + i*(vden->strides[0])) = SphQ[i].Density;
}
free(Q);
free(SphQ);
return Py_BuildValue("OO",vden,vhsml);
}
static PyObject * gadget_Density(PyObject* self, PyObject *args)
{
PyArrayObject *pos,*hsml;
if (! PyArg_ParseTuple(args, "OO",&pos,&hsml))
return PyString_FromString("error");
int i;
int input_dimension;
size_t bytes;
int ld[1];
PyArrayObject *vden,*vhsml;
input_dimension =pos->nd;
if (input_dimension != 2)
PyErr_SetString(PyExc_ValueError,"dimension of first argument must be 2");
if (pos->dimensions[0] != hsml->dimensions[0])
PyErr_SetString(PyExc_ValueError,"pos and hsml must have the same dimension.");
pos = TO_FLOAT(pos);
hsml = TO_FLOAT(hsml);
/* create a NumPy object */
ld[0]=pos->dimensions[0];
vden = (PyArrayObject *) PyArray_SimpleNew(1,pos->dimensions,pos->descr->type_num);
vhsml = (PyArrayObject *) PyArray_SimpleNew(1,pos->dimensions,pos->descr->type_num);
NumPartQ = pos->dimensions[0];
N_gasQ = NumPartQ;
All.Ti_Current=1; /* need to flag active particles */
if(!(Q = malloc(bytes = NumPartQ * sizeof(struct particle_data))))
{
printf("failed to allocate memory for `Q' (%g MB).\n", bytes / (1024.0 * 1024.0));
endrun(1);
}
if(!(SphQ = malloc(bytes = NumPartQ * sizeof(struct sph_particle_data))))
{
printf("failed to allocate memory for `SphQ' (%g MB).\n", bytes / (1024.0 * 1024.0));
endrun(1);
}
for (i = 0; i < pos->dimensions[0]; i++)
{
Q[i].Pos[0] = *(float *) (pos->data + i*(pos->strides[0]) + 0*pos->strides[1]);
Q[i].Pos[1] = *(float *) (pos->data + i*(pos->strides[0]) + 1*pos->strides[1]);
Q[i].Pos[2] = *(float *) (pos->data + i*(pos->strides[0]) + 2*pos->strides[1]);
SphQ[i].Hsml = *(float *) (hsml->data + i*(hsml->strides[0]));
}
density_sub();
for (i = 0; i < pos->dimensions[0]; i++)
{
*(float *)(vhsml->data + i*(vhsml->strides[0])) = SphQ[i].Hsml;
*(float *)(vden->data + i*(vden->strides[0])) = SphQ[i].Density;
}
free(Q);
free(SphQ);
return Py_BuildValue("OO",vden,vhsml);
}
static PyObject * gadget_SphEvaluate(PyObject* self, PyObject *args)
{
PyArrayObject *pos,*hsml,*obs;
if (! PyArg_ParseTuple(args, "OOO",&pos,&hsml,&obs))
return PyString_FromString("error");
int i;
int input_dimension;
size_t bytes;
int ld[1];
PyArrayObject *vobs;
input_dimension =pos->nd;
if (input_dimension != 2)
PyErr_SetString(PyExc_ValueError,"dimension of first argument must be 2");
if (pos->dimensions[0] != hsml->dimensions[0])
PyErr_SetString(PyExc_ValueError,"pos and hsml must have the same dimension.");
if (obs->nd != 1)
PyErr_SetString(PyExc_ValueError,"dimension of obs must be 1.");
if (obs->dimensions[0] != NumPart)
PyErr_SetString(PyExc_ValueError,"The size of obs must be NumPart.");
pos = TO_FLOAT(pos);
hsml = TO_FLOAT(hsml);
obs = TO_FLOAT(obs);
/* create a NumPy object */
ld[0]=pos->dimensions[0];
vobs = (PyArrayObject *) PyArray_SimpleNew(1,pos->dimensions,pos->descr->type_num);
NumPartQ = pos->dimensions[0];
N_gasQ = NumPartQ;
All.Ti_Current=1; /* need to flag active particles */
if(!(Q = malloc(bytes = NumPartQ * sizeof(struct particle_data))))
{
printf("failed to allocate memory for `Q' (%g MB).\n", bytes / (1024.0 * 1024.0));
endrun(1);
}
if(!(SphQ = malloc(bytes = NumPartQ * sizeof(struct sph_particle_data))))
{
printf("failed to allocate memory for `SphQ' (%g MB).\n", bytes / (1024.0 * 1024.0));
endrun(1);
}
for (i = 0; i < pos->dimensions[0]; i++)
{
Q[i].Pos[0] = *(float *) (pos->data + i*(pos->strides[0]) + 0*pos->strides[1]);
Q[i].Pos[1] = *(float *) (pos->data + i*(pos->strides[0]) + 1*pos->strides[1]);
Q[i].Pos[2] = *(float *) (pos->data + i*(pos->strides[0]) + 2*pos->strides[1]);
SphQ[i].Hsml = *(float *) (hsml->data + i*(hsml->strides[0]));
}
/* now, give observable value for P */
for (i = 0; i < NumPart; i++)
{
SphP[i].Observable = *(float *) (obs->data + i*(obs->strides[0]));
}
sph_sub();
for (i = 0; i < pos->dimensions[0]; i++)
{
*(float *)(vobs->data + i*(vobs->strides[0])) = SphQ[i].Observable;
}
free(Q);
free(SphQ);
return Py_BuildValue("O",vobs);
}
static PyObject * gadget_SphEvaluateW(PyObject* self, PyObject *args)
{
PyArrayObject *pos,*hsml,*obs;
int wmode;
if (! PyArg_ParseTuple(args, "OOOi",&pos,&hsml,&obs,&wmode))
return PyString_FromString("error");
int i;
int input_dimension;
size_t bytes;
int ld[1];
PyArrayObject *vobs;
input_dimension =pos->nd;
if (input_dimension != 2)
PyErr_SetString(PyExc_ValueError,"dimension of first argument must be 2");
if (pos->dimensions[0] != hsml->dimensions[0])
PyErr_SetString(PyExc_ValueError,"pos and hsml must have the same dimension.");
if (obs->nd != 1)
PyErr_SetString(PyExc_ValueError,"dimension of obs must be 1.");
if (obs->dimensions[0] != NumPart)
PyErr_SetString(PyExc_ValueError,"The size of obs must be NumPart.");
pos = TO_FLOAT(pos);
hsml = TO_FLOAT(hsml);
obs = TO_FLOAT(obs);
/* create a NumPy object */
ld[0]=pos->dimensions[0];
vobs = (PyArrayObject *) PyArray_SimpleNew(1,pos->dimensions,pos->descr->type_num);
NumPartQ = pos->dimensions[0];
N_gasQ = NumPartQ;
All.Ti_Current=1; /* need to flag active particles */
if(!(Q = malloc(bytes = NumPartQ * sizeof(struct particle_data))))
{
printf("failed to allocate memory for `Q' (%g MB).\n", bytes / (1024.0 * 1024.0));
endrun(1);
}
if(!(SphQ = malloc(bytes = NumPartQ * sizeof(struct sph_particle_data))))
{
printf("failed to allocate memory for `SphQ' (%g MB).\n", bytes / (1024.0 * 1024.0));
endrun(1);
}
for (i = 0; i < pos->dimensions[0]; i++)
{
Q[i].Pos[0] = *(float *) (pos->data + i*(pos->strides[0]) + 0*pos->strides[1]);
Q[i].Pos[1] = *(float *) (pos->data + i*(pos->strides[0]) + 1*pos->strides[1]);
Q[i].Pos[2] = *(float *) (pos->data + i*(pos->strides[0]) + 2*pos->strides[1]);
SphQ[i].Hsml = *(float *) (hsml->data + i*(hsml->strides[0]));
}
/* now, give observable value for P */
for (i = 0; i < NumPart; i++)
{
SphP[i].Observable = *(float *) (obs->data + i*(obs->strides[0]));
}
sph_subW(wmode);
for (i = 0; i < pos->dimensions[0]; i++)
{
*(float *)(vobs->data + i*(vobs->strides[0])) = SphQ[i].Observable;
}
free(Q);
free(SphQ);
return Py_BuildValue("O",vobs);
}
static PyObject * gadget_NgbsW(PyObject* self, PyObject *args)
{
PyArrayObject *pos,*hsml,*obs;
if (! PyArg_ParseTuple(args, "OOO",&pos,&hsml,&obs))
return PyString_FromString("error");
int i;
int input_dimension;
size_t bytes;
int ld[1];
PyArrayObject *vobs;
input_dimension =pos->nd;
if (input_dimension != 2)
PyErr_SetString(PyExc_ValueError,"dimension of first argument must be 2");
if (pos->dimensions[0] != hsml->dimensions[0])
PyErr_SetString(PyExc_ValueError,"pos and hsml must have the same dimension.");
if (obs->nd != 1)
PyErr_SetString(PyExc_ValueError,"dimension of obs must be 1.");
if (obs->dimensions[0] != NumPart)
PyErr_SetString(PyExc_ValueError,"The size of obs must be NumPart.");
pos = TO_FLOAT(pos);
hsml = TO_FLOAT(hsml);
obs = TO_FLOAT(obs);
/* create a NumPy object */
ld[0]=pos->dimensions[0];
vobs = (PyArrayObject *) PyArray_SimpleNew(1,pos->dimensions,pos->descr->type_num);
NumPartQ = pos->dimensions[0];
N_gasQ = NumPartQ;
All.Ti_Current=1; /* need to flag active particles */
if(!(Q = malloc(bytes = NumPartQ * sizeof(struct particle_data))))
{
printf("failed to allocate memory for `Q' (%g MB).\n", bytes / (1024.0 * 1024.0));
endrun(1);
}
if(!(SphQ = malloc(bytes = NumPartQ * sizeof(struct sph_particle_data))))
{
printf("failed to allocate memory for `SphQ' (%g MB).\n", bytes / (1024.0 * 1024.0));
endrun(1);
}
for (i = 0; i < pos->dimensions[0]; i++)
{
Q[i].Pos[0] = *(float *) (pos->data + i*(pos->strides[0]) + 0*pos->strides[1]);
Q[i].Pos[1] = *(float *) (pos->data + i*(pos->strides[0]) + 1*pos->strides[1]);
Q[i].Pos[2] = *(float *) (pos->data + i*(pos->strides[0]) + 2*pos->strides[1]);
SphQ[i].Hsml = *(float *) (hsml->data + i*(hsml->strides[0]));
}
/* now, give observable value for P */
for (i = 0; i < NumPart; i++)
{
SphP[i].Observable = *(float *) (obs->data + i*(obs->strides[0]));
}
sph_NgbsW();
for (i = 0; i < pos->dimensions[0]; i++)
{
*(float *)(vobs->data + i*(vobs->strides[0])) = SphQ[i].Observable;
}
free(Q);
free(SphQ);
return Py_BuildValue("O",vobs);
}
static PyObject * gadget_Ngbs(PyObject* self, PyObject *args)
{
PyArrayObject *pos;
float eps;
if (! PyArg_ParseTuple(args, "Of",&pos,&eps))
return PyString_FromString("error");
PyArrayObject *poss;
int i,j,n,nn;
int input_dimension;
size_t bytes;
int startnode,numngb;
int phase=0;
FLOAT searchcenter[3];
double dx,dy,dz,r2,eps2;
input_dimension =pos->nd;
if (input_dimension != 1)
PyErr_SetString(PyExc_ValueError,"dimension of first argument must be 1");
pos = TO_FLOAT(pos);
eps2 = eps*eps;
searchcenter[0] = (FLOAT)*(float *) (pos->data + 0*(pos->strides[0]));
searchcenter[1] = (FLOAT)*(float *) (pos->data + 1*(pos->strides[0]));
searchcenter[2] = (FLOAT)*(float *) (pos->data + 2*(pos->strides[0]));
startnode = All.MaxPart;
/* ici, il faut faire une fct qui fonctionne en //, cf hydra --> Exportflag */
numngb = ngb_treefind_pairs(&searchcenter[0], (FLOAT)eps, phase, &startnode);
nn=0;
for(n = 0;n < numngb; n++)
{
j = Ngblist[n];
dx = searchcenter[0] - P[j].Pos[0];
dy = searchcenter[1] - P[j].Pos[1];
dz = searchcenter[2] - P[j].Pos[2];
r2 = dx * dx + dy * dy + dz * dz;
if (r2<=eps2)
{
printf("%d r=%g\n",nn,sqrt(r2));
nn++;
}
}
return PyArray_Return(pos);
}
static PyObject * gadget_SphEvaluateOrigAll(PyObject* self, PyObject *args)
{
PyArrayObject *obs;
if (! PyArg_ParseTuple(args, "O",&obs))
return PyString_FromString("error");
int i;
size_t bytes;
int ld[1];
PyArrayObject *vobs;
if (obs->nd != 1)
PyErr_SetString(PyExc_ValueError,"dimension of obs must be 1.");
if (obs->dimensions[0] != NumPart)
PyErr_SetString(PyExc_ValueError,"The size of obs must be NumPart.");
obs = TO_FLOAT(obs);
/* create a NumPy object */
ld[0]=NumPart;
vobs = (PyArrayObject *) PyArray_SimpleNew(1,ld,PyArray_FLOAT);
/* flag all particles as active */
for (i = 0; i < NumPart; i++)
P[i].Ti_endstep == All.Ti_Current;
/* now, give observable value for P */
for (i = 0; i < NumPart; i++)
{
SphP[i].Observable = *(float *) (obs->data + i*(obs->strides[0]));
}
sph_orig();
for (i = 0; i < NumPart; i++)
{
*(float *)(vobs->data + i*(vobs->strides[0])) = SphP[i].Observable;
}
return Py_BuildValue("O",vobs);
}
static PyObject * gadget_SphEvaluateAll(PyObject* self, PyObject *args)
{
PyArrayObject *obs;
if (! PyArg_ParseTuple(args, "O",&obs))
return PyString_FromString("error");
int i;
size_t bytes;
int ld[1];
PyArrayObject *vobs;
if (obs->nd != 1)
PyErr_SetString(PyExc_ValueError,"dimension of obs must be 1.");
if (obs->dimensions[0] != NumPart)
PyErr_SetString(PyExc_ValueError,"The size of obs must be NumPart.");
obs = TO_FLOAT(obs);
/* create a NumPy object */
ld[0]=NumPart;
vobs = (PyArrayObject *) PyArray_SimpleNew(1,ld,PyArray_FLOAT);
/* flag all particles as active */
for (i = 0; i < NumPart; i++)
P[i].Ti_endstep == All.Ti_Current;
/* now, give observable value for P */
for (i = 0; i < NumPart; i++)
{
SphP[i].Observable = *(float *) (obs->data + i*(obs->strides[0]));
}
sph();
for (i = 0; i < NumPart; i++)
{
*(float *)(vobs->data + i*(vobs->strides[0])) = SphP[i].Observable;
}
return Py_BuildValue("O",vobs);
}
static PyObject * gadget_SphEvaluateGradientAll(PyObject* self, PyObject *args)
{
PyArrayObject *obs;
if (! PyArg_ParseTuple(args, "O",&obs))
return PyString_FromString("error");
int i;
size_t bytes;
npy_intp ld[2];
PyArrayObject *grad;
if (obs->nd != 1)
PyErr_SetString(PyExc_ValueError,"dimension of obs must be 1.");
if (obs->dimensions[0] != NumPart)
PyErr_SetString(PyExc_ValueError,"The size of obs must be NumPart.");
obs = TO_FLOAT(obs);
All.Ti_Current=1; /* need to flag active particles */
/* now, give observable value for P */
for (i = 0; i < NumPart; i++)
{
SphP[i].Observable = *(float *) (obs->data + i*(obs->strides[0]));
}
sph();
/* create a NumPy object */
ld[0] = NumPart;
ld[1] = 3;
grad = (PyArrayObject *) PyArray_SimpleNew(2,ld,PyArray_FLOAT);
for (i = 0; i < NumPart; i++)
{
*(float *) (grad->data + i*(grad->strides[0]) + 0*grad->strides[1]) = SphP[i].GradObservable[0];
*(float *) (grad->data + i*(grad->strides[0]) + 1*grad->strides[1]) = SphP[i].GradObservable[1];
*(float *) (grad->data + i*(grad->strides[0]) + 2*grad->strides[1]) = SphP[i].GradObservable[2];
}
return PyArray_Return(grad);
}
static PyObject * gadget_DensityEvaluateAll(PyObject* self, PyObject *args)
{
int i;
/* flag all particles as active */
//All.Ti_Current=1; /* need to flag active particles */
for (i = 0; i < NumPart; i++)
P[i].Ti_endstep == All.Ti_Current;
density(0);
return Py_BuildValue("i",1);
}
static PyObject * gadget_DensityEvaluateGradientAll(PyObject* self, PyObject *args)
{
PyArrayObject *obs;
if (! PyArg_ParseTuple(args, "O",&obs))
return PyString_FromString("error");
int i;
size_t bytes;
npy_intp ld[2];
PyArrayObject *grad;
if (obs->nd != 1)
PyErr_SetString(PyExc_ValueError,"dimension of obs must be 1.");
if (obs->dimensions[0] != NumPart)
PyErr_SetString(PyExc_ValueError,"The size of obs must be NumPart.");
obs = TO_FLOAT(obs);
//All.Ti_Current=1; /* need to flag active particles */
for (i = 0; i < NumPart; i++)
P[i].Ti_endstep == All.Ti_Current;
/* now, give observable value for P */
for (i = 0; i < NumPart; i++)
{
SphP[i].Observable = *(float *) (obs->data + i*(obs->strides[0]));
}
density_sph_gradient();
/* create a NumPy object */
ld[0] = NumPart;
ld[1] = 3;
grad = (PyArrayObject *) PyArray_SimpleNew(2,ld,PyArray_FLOAT);
for (i = 0; i < NumPart; i++)
{
*(float *) (grad->data + i*(grad->strides[0]) + 0*grad->strides[1]) = SphP[i].GradObservable[0];
*(float *) (grad->data + i*(grad->strides[0]) + 1*grad->strides[1]) = SphP[i].GradObservable[1];
*(float *) (grad->data + i*(grad->strides[0]) + 2*grad->strides[1]) = SphP[i].GradObservable[2];
}
return PyArray_Return(grad);
}
static PyObject * gadget_EvaluateThermalConductivity(PyObject* self, PyObject *args)
{
PyArrayObject *obs;
if (! PyArg_ParseTuple(args, "O",&obs))
return PyString_FromString("error");
int i;
size_t bytes;
npy_intp ld[2];
PyArrayObject *grad;
if (obs->nd != 1)
PyErr_SetString(PyExc_ValueError,"dimension of obs must be 1.");
if (obs->dimensions[0] != NumPart)
PyErr_SetString(PyExc_ValueError,"The size of obs must be NumPart.");
obs = TO_FLOAT(obs);
//All.Ti_Current=1; /* need to flag active particles */
for (i = 0; i < NumPart; i++)
P[i].Ti_endstep == All.Ti_Current;
/* now, give observable value for P */
for (i = 0; i < NumPart; i++)
{
SphP[i].Observable = *(float *) (obs->data + i*(obs->strides[0]));
}
density_sph_gradient();
// equivalent of SphP[i].GradEnergyInt[0] is now in
//SphP[i].GradObservable[0]
//SphP[i].GradObservable[1]
//SphP[i].GradObservable[2]
/* now, compute thermal conductivity */
sph_thermal_conductivity();
/* create a NumPy object */
ld[0] = NumPart;
ld[1] = 3;
grad = (PyArrayObject *) PyArray_SimpleNew(2,ld,PyArray_FLOAT);
for (i = 0; i < NumPart; i++)
{
*(float *) (grad->data + i*(grad->strides[0]) + 0*grad->strides[1]) = SphP[i].GradObservable[0];
*(float *) (grad->data + i*(grad->strides[0]) + 1*grad->strides[1]) = SphP[i].GradObservable[1];
*(float *) (grad->data + i*(grad->strides[0]) + 2*grad->strides[1]) = SphP[i].GradObservable[2];
}
return PyArray_Return(grad);
}
static PyObject *gadget_LoadParticles2(PyObject *self, PyObject *args, PyObject *kwds)
{
int i,j;
size_t bytes;
PyArrayObject *ntype,*pos,*vel,*mass,*num,*tpe;
static char *kwlist[] = {"npart", "pos","vel","mass","num","tpe", NULL};
if (! PyArg_ParseTupleAndKeywords(args, kwds, "|OOOOOO",kwlist,&ntype,&pos,&vel,&mass,&num,&tpe))
return Py_BuildValue("i",1);
/* check type */
if (!(PyArray_Check(pos)))
{
PyErr_SetString(PyExc_ValueError,"aruments 1 must be array.");
return NULL;
}
/* check type */
if (!(PyArray_Check(mass)))
{
PyErr_SetString(PyExc_ValueError,"aruments 2 must be array.");
return NULL;
}
/* check dimension */
if ( (pos->nd!=2))
{
PyErr_SetString(PyExc_ValueError,"Dimension of argument 1 must be 2.");
return NULL;
}
/* check dimension */
if ( (mass->nd!=1))
{
PyErr_SetString(PyExc_ValueError,"Dimension of argument 2 must be 1.");
return NULL;
}
/* check size */
if ( (pos->dimensions[1]!=3))
{
PyErr_SetString(PyExc_ValueError,"First size of argument must be 3.");
return NULL;
}
/* check size */
if ( (pos->dimensions[0]!=mass->dimensions[0]))
{
PyErr_SetString(PyExc_ValueError,"Size of argument 1 must be similar to argument 2.");
return NULL;
}
/* ensure double */
// ntype = TO_INT(ntype);
// pos = TO_FLOAT(pos);
// vel = TO_FLOAT(vel);
// mass = TO_FLOAT(mass);
// num = TO_FLOAT(num);
// tpe = TO_FLOAT(tpe);
/***************************************
* some inits *
/***************************************/
RestartFlag = 0;
Begrun1();
/***************************************
* LOAD PARTILES *
/***************************************/
NumPart = 0;
N_gas = *(int*) (ntype->data + 0*(ntype->strides[0]));
for (i = 0; i < 6; i++)
NumPart += *(int*) (ntype->data + i*(ntype->strides[0]));
if (NumPart!=pos->dimensions[0])
{
PyErr_SetString(PyExc_ValueError,"Numpart != pos->dimensions[0].");
return NULL;
}
MPI_Allreduce(&NumPart, &All.TotNumPart, 1, MPI_INT, MPI_SUM, MPI_COMM_WORLD);
MPI_Allreduce(&N_gas, &All.TotN_gas, 1, MPI_INT, MPI_SUM, MPI_COMM_WORLD);
All.MaxPart = All.PartAllocFactor * (All.TotNumPart / NTask);
All.MaxPartSph = All.PartAllocFactor * (All.TotN_gas / NTask);
/*********************/
/* allocate P */
/*********************/
if(!(P = malloc(bytes = All.MaxPart * sizeof(struct particle_data))))
{
printf("failed to allocate memory for `P' (%g MB).\n", bytes / (1024.0 * 1024.0));
endrun(1);
}
if(!(SphP = malloc(bytes = All.MaxPartSph * sizeof(struct sph_particle_data))))
{
printf("failed to allocate memory for `SphP' (%g MB) %d.\n", bytes / (1024.0 * 1024.0), sizeof(struct sph_particle_data));
endrun(1);
}
/*********************/
/* init P */
/*********************/
float * fpt;
for (i = 0; i < NumPart; i++)
{
//P[i].Pos[0] = *(float *) (pos->data + i*(pos->strides[0]) + 0*pos->strides[1]);
//P[i].Pos[1] = *(float *) (pos->data + i*(pos->strides[0]) + 1*pos->strides[1]);
//P[i].Pos[2] = *(float *) (pos->data + i*(pos->strides[0]) + 2*pos->strides[1]);
//&P[i].Pos[0] = (float *) (pos->data + i*(pos->strides[0]) + 0*pos->strides[1]);
//&P[i].Pos[1] = (float *) (pos->data + i*(pos->strides[0]) + 1*pos->strides[1]);
//&P[i].Pos[2] = (float *) (pos->data + i*(pos->strides[0]) + 2*pos->strides[1]);
fpt = (float *) (pos->data + i*(pos->strides[0]) + 0*pos->strides[1]);
P[i].Vel[0] = *(float *) (vel->data + i*(vel->strides[0]) + 0*vel->strides[1]);
P[i].Vel[1] = *(float *) (vel->data + i*(vel->strides[0]) + 1*vel->strides[1]);
P[i].Vel[2] = *(float *) (vel->data + i*(vel->strides[0]) + 2*vel->strides[1]);
P[i].Mass = *(float *) (mass->data + i*(mass->strides[0]));
P[i].ID = *(unsigned int *) (num->data + i*(num->strides[0]));
P[i].Type = *(int *) (tpe->data + i*(tpe->strides[0]));
//P[i].Active = 1;
}
/***************************************
* END LOAD PARTILES *
/***************************************/
/***************************************
* finish inits *
/***************************************/
Begrun2();
return Py_BuildValue("i",1);
}
static PyObject *gadget_domain_Decomposition(PyObject *self, PyObject *args, PyObject *kwds)
{
All.NumForcesSinceLastDomainDecomp = 1 + All.TotNumPart * All.TreeDomainUpdateFrequency;
Flag_FullStep = 1; /* to ensure that Peano-Hilber order is done */
domain_Decomposition();
return Py_BuildValue("i",1);
}
static PyObject *gadget_gravity_tree(PyObject *self, PyObject *args, PyObject *kwds)
{
gravity_tree();
return Py_BuildValue("i",1);
}
static PyObject *
gadget_set_particles_timestep(self, args)
PyObject *self;
PyObject *args;
{
int i;
double dt;
if (!PyArg_ParseTuple(args, "d", &dt))
return NULL;
All.Ti_Current = (int) (dt / All.Timebase_interval);
for (i = 0; i < NumPart; i++)
{
P[i].Ti_begstep = (int) 0;
P[i].Ti_endstep = All.Ti_Current;
}
return Py_BuildValue("i",1);
}
#ifdef SFR
static PyObject *
gadget_star_formation(self, args)
PyObject *self;
PyObject *args;
{
star_formation();
return Py_BuildValue("i",1);
}
static PyObject *
gadget_get_id_of_new_stars(self, args)
PyObject *self;
PyObject *args;
{
int i,j;
int Nstars = 0;
PyArrayObject *ids;
npy_intp ld[1];
/* count */
for (i = 0; i < N_gas; i++)
{
if(P[i].Type == ST)
Nstars++;
}
/* create a NumPy object */
ld[0] = Nstars;
ids = (PyArrayObject *) PyArray_SimpleNew(1,ld,PyArray_INT);
for (i = 0,j =0; i < N_gas; i++)
if(P[i].Type == ST)
{
*(int *) (ids->data + j*(ids->strides[0])) = P[i].ID;
j++;
}
return PyArray_Return(ids);
}
#endif
#ifdef CHIMIE
static PyObject * Chimie_SetParameters(PyObject *dict)
{
PyObject *key;
PyObject *value;
int ivalue;
float fvalue;
double dvalue;
/* check that it is a PyDictObject */
if(!PyDict_Check(dict))
{
PyErr_SetString(PyExc_AttributeError, "argument is not a dictionary.");
return NULL;
}
if (PyDict_Size(dict)==0)
return Py_BuildValue("i",0);
Py_ssize_t pos=0;
while(PyDict_Next(dict,&pos,&key,&value))
{
if(PyString_Check(key))
{
/* System of units */
if(strcmp(PyString_AsString(key), "UnitLength_in_cm")==0)
{
if(PyInt_Check(value)||PyLong_Check(value)||PyFloat_Check(value))
All.UnitLength_in_cm = PyFloat_AsDouble(value);
}
if(strcmp(PyString_AsString(key), "UnitMass_in_g")==0)
{
if(PyInt_Check(value)||PyLong_Check(value)||PyFloat_Check(value))
All.UnitMass_in_g = PyFloat_AsDouble(value);
}
if(strcmp(PyString_AsString(key), "UnitVelocity_in_cm_per_s")==0)
{
if(PyInt_Check(value)||PyLong_Check(value)||PyFloat_Check(value))
All.UnitVelocity_in_cm_per_s = PyFloat_AsDouble(value);
}
if(strcmp(PyString_AsString(key), "GravityConstantInternal")==0)
{
if(PyInt_Check(value)||PyLong_Check(value)||PyFloat_Check(value))
All.GravityConstantInternal = PyFloat_AsDouble(value);
}
}
}
return Py_BuildValue("i",1);
}
static PyObject * chemistry_InitDefaultParameters(void)
{
/* list of Gadget parameters */
/* System of units */
All.UnitLength_in_cm = 3.085e+21; /* 1.0 kpc */
All.UnitMass_in_g = 1.989e+43; /* 1.0e10 solar masses */
All.UnitVelocity_in_cm_per_s = 20725573.785998672; /* 207 km/sec */
All.GravityConstantInternal = 0;
All.UnitTime_in_s = All.UnitLength_in_cm / All.UnitVelocity_in_cm_per_s;
All.UnitTime_in_Megayears=All.UnitTime_in_s / SEC_PER_MEGAYEAR;
return Py_BuildValue("i",1);
}
static PyObject *
gadget_init_chimie(PyObject *self, PyObject *args, PyObject *kwds)
{
int NumberOfTables=1;
int DefaultTable=0;
PyObject *paramsDict=NULL;
paramsDict= PyDict_New();
//PyObject *filename;
//if (! PyArg_ParseTuple(args, "Oii",&filename,&NumberOfTables,&DefaultTable))
// {
// PyErr_SetString(PyExc_ValueError,"init_chimie, error in parsing.");
// return NULL;
// }
static char *kwlist[] = {"filename","NumberOfTables","DefaultTable","params", NULL};
PyObject *filename=PyString_FromString("chimie.yr.dat");
/* this fails with python2.6, I do not know why ??? */
if (! PyArg_ParseTupleAndKeywords(args, kwds, "|OiiO",kwlist,&filename,&NumberOfTables,&DefaultTable,&paramsDict))
{
PyErr_SetString(PyExc_ValueError,"init_chimie, error in parsing arguments.");
return NULL;
}
if (!PyString_Check(filename))
{
PyErr_SetString(PyExc_ValueError,"Argument must be a string.");
return NULL;
}
/* copy filename */
All.ChimieParameterFile = PyString_AsString(filename);
/* set number of tables */
All.ChimieNumberOfParameterFiles = NumberOfTables;
/* check if the file exists */
if(!(fopen(All.ChimieParameterFile, "r")))
{
PyErr_SetString(PyExc_ValueError,"The parameter file does not exists.");
return NULL;
}
/* use default parameters */
chemistry_InitDefaultParameters();
/* check if units are given */
/* check that it is a PyDictObject */
if(!PyDict_Check(paramsDict))
{
PyErr_SetString(PyExc_AttributeError, "argument is not a dictionary.");
return NULL;
}
else
{
Chimie_SetParameters(paramsDict);
}
init_chimie();
/* by default, set the first one */
set_table(DefaultTable);
return Py_BuildValue("O",Py_None);
}
#endif
#ifdef INTEGRAL_CONSERVING_DISSIPATION
static PyObject *
gadget_icd_set_LocalDissipationOn(self, args)
PyObject *self;
PyObject *args;
{
icd_set_LocalDissipationOn();
return Py_BuildValue("i",1);
}
static PyObject *
gadget_icd_set_LocalDissipationOff(self, args)
PyObject *self;
PyObject *args;
{
icd_set_LocalDissipationOff();
return Py_BuildValue("i",1);
}
static PyObject *
gadget_compute_integrals_m1(self, args)
PyObject *self;
PyObject *args;
{
compute_integrals_m1();
return Py_BuildValue("i",1);
}
static PyObject *
gadget_compute_alpha_m1(self, args)
PyObject *self;
PyObject *args;
{
compute_alpha_m1();
return Py_BuildValue("i",1);
}
static PyObject *
gadget_apply_transformation_m1(self, args)
PyObject *self;
PyObject *args;
{
apply_transformation_m1();
return Py_BuildValue("i",1);
}
static PyObject *
gadget_icd_find_ngbs(self, args)
PyObject *self;
PyObject *args;
{
icd_find_ngbs();
return Py_BuildValue("i",1);
}
static PyObject *
gadget_icd_allocate_numlist(self, args)
PyObject *self;
PyObject *args;
{
icd_allocate_numlist();
return Py_BuildValue("i",1);
}
static PyObject *
gadget_icd_free_numlist(self, args)
PyObject *self;
PyObject *args;
{
icd_free_numlist();
return Py_BuildValue("i",1);
}
static PyObject *
gadget_icd_get_alpha(self, args)
PyObject *self;
PyObject *args;
{
return Py_BuildValue("d",icd_get_alpha());
}
static PyObject *
gadget_icd_get_M(self, args)
PyObject *self;
PyObject *args;
{
return Py_BuildValue("d",icd_get_M());
}
static PyObject *
gadget_icd_get_X(self, args)
PyObject *self;
PyObject *args;
{
int i;
double x[3];
PyArrayObject *xv;
npy_intp ld[1];
icd_get_X(x);
/* create a NumPy object */
ld[0] = 3;
xv = (PyArrayObject *) PyArray_SimpleNew(1,ld,PyArray_DOUBLE);
for (i = 0; i < 3; i++)
*(double *) (xv->data + i*(xv->strides[0])) = x[i];
return PyArray_Return(xv);
}
static PyObject *
gadget_icd_get_V(self, args)
PyObject *self;
PyObject *args;
{
int i;
double v[3];
PyArrayObject *vv;
npy_intp ld[1];
icd_get_V(v);
/* create a NumPy object */
ld[0] = 3;
vv = (PyArrayObject *) PyArray_SimpleNew(1,ld,PyArray_DOUBLE);
for (i = 0; i < 3; i++)
*(double *) (vv->data + i*(vv->strides[0])) = v[i];
return PyArray_Return(vv);
}
static PyObject *
gadget_icd_get_T(self, args)
PyObject *self;
PyObject *args;
{
return Py_BuildValue("d",icd_get_T());
}
static PyObject *
gadget_icd_get_I(self, args)
PyObject *self;
PyObject *args;
{
return Py_BuildValue("d",icd_get_I());
}
static PyObject *
gadget_icd_get_J(self, args)
PyObject *self;
PyObject *args;
{
return Py_BuildValue("d",icd_get_J());
}
static PyObject *
gadget_icd_get_DeltaTmin(self, args)
PyObject *self;
PyObject *args;
{
return Py_BuildValue("d",icd_get_DeltaTmin());
}
static PyObject *
gadget_icd_set_des_nngb(self, args)
PyObject *self;
PyObject *args;
{
int n;
if (!PyArg_ParseTuple(args, "i", &n))
return NULL;
icd_set_des_nngb(n);
return Py_BuildValue("d",0);
}
static PyObject *
gadget_icd_set_xc(self, args)
PyObject *self;
PyObject *args;
{
int i;
double x[3];
PyArrayObject *vx;
if (!PyArg_ParseTuple(args, "O", &vx))
return NULL;
for (i = 0; i < 3; i++)
x[i] = *(double *) (vx->data + i*(vx->strides[0])) ;
icd_set_xc(x);
return Py_BuildValue("d",0);
}
static PyObject *
gadget_get_Total_Gas_energy_kin(self, args)
PyObject *self;
PyObject *args;
{
return Py_BuildValue("d",get_Total_Gas_energy_kin());
}
#endif
#ifdef FOF
static PyObject *
gadget_fof(self, args)
PyObject *self;
PyObject *args;
{
fof();
return Py_BuildValue("i",0);
}
static PyObject *
gadget_fof_init(self, args)
PyObject *self;
PyObject *args;
{
fof_init();
return Py_BuildValue("i",0);
}
static PyObject *
gadget_fof_find_densest_neighbour(self, args)
PyObject *self;
PyObject *args;
{
fof_find_densest_neighbour();
return Py_BuildValue("i",0);
}
static PyObject *
gadget_fof_find_local_heads(self, args)
PyObject *self;
PyObject *args;
{
fof_find_local_heads();
return Py_BuildValue("i",0);
}
static PyObject *
gadget_fof_link_particles_to_local_head(self, args)
PyObject *self;
PyObject *args;
{
fof_link_particles_to_local_head();
return Py_BuildValue("i",0);
}
static PyObject *
gadget_fof_clean_local_groups(self, args)
PyObject *self;
PyObject *args;
{
fof_clean_local_groups();
return Py_BuildValue("i",0);
}
static PyObject *
gadget_fof_compute_local_tails(self, args)
PyObject *self;
PyObject *args;
{
fof_compute_local_tails();
return Py_BuildValue("i",0);
}
static PyObject *
gadget_fof_regroup_pseudo_heads(self, args)
PyObject *self;
PyObject *args;
{
fof_regroup_pseudo_heads();
return Py_BuildValue("i",0);
}
static PyObject *
gadget_fof_send_and_link_pseudo_heads(self, args)
PyObject *self;
PyObject *args;
{
fof_send_and_link_pseudo_heads();
return Py_BuildValue("i",0);
}
static PyObject *
gadget_fof_regroup_exported_pseudo_heads(self, args)
PyObject *self;
PyObject *args;
{
fof_regroup_exported_pseudo_heads();
return Py_BuildValue("i",0);
}
static PyObject *
gadget_fof_write_all_groups(self, args)
PyObject *self;
PyObject *args;
{
fof_write_all_groups();
return Py_BuildValue("i",0);
}
static PyObject *
gadget_fof_allocate_groups(self, args)
PyObject *self;
PyObject *args;
{
fof_allocate_groups();
return Py_BuildValue("i",0);
}
static PyObject *
gadget_fof_compute_groups_properties(self, args)
PyObject *self;
PyObject *args;
{
fof_compute_groups_properties();
return Py_BuildValue("i",0);
}
#ifdef SFR
static PyObject *
gadget_fof_star_formation(self, args)
PyObject *self;
PyObject *args;
{
fof_star_formation();
return Py_BuildValue("i",0);
}
static PyObject *
gadget_fof_star_formation_and_IMF_sampling(self, args)
PyObject *self;
PyObject *args;
{
fof_star_formation_and_IMF_sampling();
return Py_BuildValue("i",0);
}
#endif
static PyObject *
gadget_fof_free_groups(self, args)
PyObject *self;
PyObject *args;
{
fof_free_groups();
return Py_BuildValue("i",0);
}
static PyObject *
gadget_fof_get_Total_NumberOfGroups(self, args)
PyObject *self;
PyObject *args;
{
return Py_BuildValue("i",Tot_Ngroups);
}
static PyObject *
gadget_fof_get_Total_NumberOfSfrGroups(self, args)
PyObject *self;
PyObject *args;
{
return Py_BuildValue("i",Tot_Nsfrgroups);
}
static PyObject *
gadget_fof_get_NumberOfGroups(self, args)
PyObject *self;
PyObject *args;
{
return Py_BuildValue("i",Ngroups);
}
static PyObject *
gadget_fof_get_IDOfParticlesInSfrGroups(self, args)
PyObject *self;
PyObject *args;
{
PyArrayObject *ids;
PyArrayObject *gids;
npy_intp ld[1];
int i,j;
int *id_list;
int gid;
int *nlist,*noffset;
int head_id;
int next;
/*
1) get list of true heads
*/
id_list = malloc(Ntsfrgroups * sizeof(int));
Tot_HeadID_list = malloc(Tot_Ntsfrgroups * sizeof(int));
nlist = malloc(sizeof(int) * NTask);
noffset = malloc(sizeof(int) * NTask);
/* loop over true heads */
if (Nsfrgroups>0)
{
for (gid=0,j=0;gid<Ngroups;gid++)
if( Groups[gid].Task == ThisTask ) /* a true group */
{
if( Groups[gid].SfrFlag == 1 ) /* a groups forming stars */
{
id_list[j] = Groups[gid].HeadID;
//printf("(%d) -->> %d\n",ThisTask,Groups[gid].HeadID);
j++;
}
}
/* print to check */
//for (j=0;j<Ntgroups;j++)
// printf("(%d) --> %d\n",ThisTask,id_list[j]);
}
/* now, the master needs to gather all lists */
//MPI_Gather(&Ntsfrgroups, 1, MPI_INT, nlist, 1, MPI_INT, 0, MPI_COMM_WORLD);
MPI_Allgather(&Ntsfrgroups, 1, MPI_INT, nlist, 1, MPI_INT, MPI_COMM_WORLD);
for(i = 0, noffset[0] = 0; i < NTask; i++)
if(i > 0)
noffset[i] = noffset[i - 1] + nlist[i - 1];
//MPI_Gatherv(id_list,Ntsfrgroups,MPI_INT, Tot_HeadID_list, nlist, noffset, MPI_INT,0, MPI_COMM_WORLD );
MPI_Allgatherv(id_list,Ntsfrgroups,MPI_INT, Tot_HeadID_list, nlist, noffset, MPI_INT, MPI_COMM_WORLD );
free(noffset);
free(nlist);
free(id_list);
/* now, the python part */
ld[0] = Tot_Ntsfrgroups;
ids = (PyArrayObject *) PyArray_SimpleNew(1,ld,PyArray_INT);
for (i = 0; i < ids->dimensions[0]; i++)
*(int *) (ids->data + i*(ids->strides[0])) = Tot_HeadID_list[i];
/*
3) get list of particles in each group
*/
PyObject *dict;
PyObject *key;
dict = PyDict_New();
/* loop over all groups */
for (i=0;i<Tot_Ngroups;i++)
{
head_id = Tot_HeadID_list[i]; /* select a true head among the total list */
/* loop over groups */
if (Nsfrgroups>0)
{
for (gid=0;gid<Ngroups;gid++)
{
if(Groups[gid].HeadID==head_id)
{
if(Groups[gid].SfrFlag == 1) /* a groups forming stars */
{
//printf("(%d) >>> %d\n",ThisTask,Groups[gid].Nlocal); /* here, we know how many particles are linked to the head */
/* this works */
//PyDict_SetItem( dict, PyInt_FromLong((long)head_id), PyInt_FromLong((long)Groups[gid].Nlocal) );
/* now, the python part */
ld[0] = Groups[gid].Nlocal;
gids = (PyArrayObject *) PyArray_SimpleNew(1,ld,PyArray_INT);
for (j = 0; j < ids->dimensions[0]; j++)
*(int *) (ids->data + j*(ids->strides[0])) = Tot_HeadID_list[j];
next=Groups[gid].LocalHead;
j=0;
while(next!=-1) /* loop over all local members */
{
//printf("(%d) id=%d\n",ThisTask,P[next].ID); /* here, we get the ids */
*(int *) (gids->data + j*(gids->strides[0])) = P[next].ID;
//printf("(%d) head_id=%d j=%d id=%d\n",ThisTask,head_id,j,P[next].ID);
next=SphP[next].FOF_Next;
j++;
}
PyDict_SetItem( dict, PyInt_FromLong((long)head_id), gids );
}
}
}
}
}
/* release memory */
free(Tot_HeadID_list);
return Py_BuildValue("OO",ids,dict);
//return PyArray_Return(ids);
}
static PyObject *
gadget_fof_get_HeadIDs(self, args)
PyObject *self;
PyObject *args;
{
PyArrayObject *ids;
npy_intp ld[1];
int gid,i;
ld[0] = Ntgroups;
ids = (PyArrayObject *) PyArray_SimpleNew(1,ld,PyArray_INT);
for (i=0,gid=0;gid<Ngroups;gid++)
if( Groups[gid].Task == ThisTask )
{
*(int *) (ids->data + i*(ids->strides[0])) = Groups[gid].HeadID;
i++;
}
return PyArray_Return(ids);
}
#endif // FOF
#ifdef TESSEL
static PyObject *gadget_ConstructDelaunay(PyObject *self, PyObject *args, PyObject *kwds)
{
ConstructDelaunay();
return Py_BuildValue("i",1);
}
static PyObject *gadget_ComputeVoronoi(PyObject *self, PyObject *args, PyObject *kwds)
{
ComputeVoronoi();
return Py_BuildValue("i",1);
}
static PyObject *gadget_ComputeTesselAccelerations(PyObject *self, PyObject *args, PyObject *kwds)
{
tessel_compute_accelerations();
return Py_BuildValue("i",1);
}
static PyObject *gadget_InitvEntropy(PyObject *self, PyObject *args, PyObject *kwds)
{
tessel_convert_energy_to_entropy();
return Py_BuildValue("i",1);
}
static PyObject *gadget_tessel_drift(PyObject *self, PyObject *args, PyObject *kwds)
{
float dt;
if (!PyArg_ParseTuple(args,"f",&dt))
return NULL;
tessel_drift(dt);
return Py_BuildValue("i",1);
}
static PyObject *gadget_tessel_kick(PyObject *self, PyObject *args, PyObject *kwds)
{
float dt;
if (!PyArg_ParseTuple(args,"f",&dt))
return NULL;
tessel_kick(dt);
return Py_BuildValue("i",1);
}
static PyObject *gadget_tessel_get_timestep(PyObject *self, PyObject *args, PyObject *kwds)
{
double dt;
dt = tessel_get_timestep();
return Py_BuildValue("f",(float)dt);
}
static PyObject *gadget_tessel_dump_triangles(PyObject *self, PyObject *args, PyObject *kwds)
{
char *filename;
if (!PyArg_ParseTuple(args, "s", &filename))
return NULL;
dump_triangles(filename);
return Py_BuildValue("i",1);
}
static PyObject *gadget_tessel_dump_voronoi(PyObject *self, PyObject *args, PyObject *kwds)
{
char *filename;
if (!PyArg_ParseTuple(args, "s", &filename))
return NULL;
dump_voronoi(filename);
return Py_BuildValue("i",1);
}
#endif /*TESSEL*/
/* definition of the method table */
static PyMethodDef gadgetMethods[] = {
{"Info", (PyCFunction)gadget_Info, METH_VARARGS,
"give some info"},
{"InitMPI", (PyCFunction)gadget_InitMPI, METH_VARARGS,
"Init MPI"},
{"InitDefaultParameters", (PyCFunction)gadget_InitDefaultParameters, METH_VARARGS,
"Init default parameters"},
{"GetParameters", (PyCFunction)gadget_GetParameters, METH_VARARGS,
"get gadget parameters"},
{"SetParameters", (PyCFunction)gadget_SetParameters, METH_VARARGS,
"Set gadget parameters"},
{"check_parser", (PyCFunction)gadget_check_parser, METH_VARARGS|METH_KEYWORDS,
"check the parser"},
{"Start", (PyCFunction)gadget_Start, METH_VARARGS|METH_KEYWORDS,
"Start gadget"},
{"LoadParticles", (PyCFunction)gadget_LoadParticles, METH_VARARGS|METH_KEYWORDS,
"LoadParticles partilces"},
{"LoadParticlesQ", (PyCFunction)gadget_LoadParticlesQ, METH_VARARGS,
"LoadParticles partilces Q"},
{"LoadParticles2", (PyCFunction)gadget_LoadParticles2, METH_VARARGS,
"LoadParticles partilces"},
{"AllPotential", (PyCFunction)gadget_AllPotential, METH_VARARGS,
"Computes the potential for each particle"},
{"AllAcceleration", (PyCFunction)gadget_AllAcceleration, METH_VARARGS,
"Computes the gravitational acceleration for each particle"},
{"GetAllAcceleration", (PyCFunction)gadget_GetAllAcceleration, METH_VARARGS,
"get the gravitational acceleration for each particle"},
{"GetAllPotential", (PyCFunction)gadget_GetAllPotential, METH_VARARGS,
"get the potential for each particle"},
{"GetAllDensities", (PyCFunction)gadget_GetAllDensities, METH_VARARGS,
"get the densities for each particle"},
#ifdef DENSITY_INDEPENDENT_SPH
{"GetAllEgyWtDensities", (PyCFunction)gadget_GetAllEgyWtDensities, METH_VARARGS,
"get the egywtdensities for each particle"},
#endif
{"GetAllHsml", (PyCFunction)gadget_GetAllHsml, METH_VARARGS,
"get the sph smoothing length for each particle"},
{"GetAllPositions", (PyCFunction)gadget_GetAllPositions, METH_VARARGS,
"get the position for each particle"},
{"GetAllVelocities", (PyCFunction)gadget_GetAllVelocities, METH_VARARGS,
"get the velocities for each particle"},
{"GetAllMasses", (PyCFunction)gadget_GetAllMasses, METH_VARARGS,
"get the mass for each particle"},
{"GetAllEnergySpec", (PyCFunction)gadget_GetAllEnergySpec, METH_VARARGS,
"get the specific energy for each particle"},
{"GetAllEntropy", (PyCFunction)gadget_GetAllEntropy, METH_VARARGS,
"get the entropy for each particle"},
{"GetAllID", (PyCFunction)gadget_GetAllID, METH_VARARGS,
"get the ID for each particle"},
{"GetAllTypes", (PyCFunction)gadget_GetAllTypes, METH_VARARGS,
"get the type for each particle"},
#ifdef CHIMIE
{"GetAllMetal", (PyCFunction)gadget_GetAllMetal, METH_VARARGS,
"get the metal for each particle"},
#endif
{"GetPos", (PyCFunction)gadget_GetPos, METH_VARARGS,
"get the position for each particle (no memory overhead)"},
{"Potential", (PyCFunction)gadget_Potential, METH_VARARGS,
"get the potential for a givent sample of points"},
{"Acceleration", (PyCFunction)gadget_Acceleration, METH_VARARGS,
"get the acceleration for a givent sample of points"},
{"SphEvaluateOrigAll", (PyCFunction)gadget_SphEvaluateOrigAll, METH_VARARGS,
"run the original sph routine."},
{"SphEvaluateAll", (PyCFunction)gadget_SphEvaluateAll, METH_VARARGS,
"compute mean value of a given field based on the sph convolution for all points."},
{"SphEvaluateGradientAll", (PyCFunction)gadget_SphEvaluateGradientAll, METH_VARARGS,
"compute the gradient of a given field based on the sph convolution for all points."},
{"DensityEvaluateAll", (PyCFunction)gadget_DensityEvaluateAll, METH_VARARGS,
"simply run the density function"},
{"DensityEvaluateGradientAll", (PyCFunction)gadget_DensityEvaluateGradientAll, METH_VARARGS,
"run the modified density function and compute a gradient from the given value"},
{"EvaluateThermalConductivity", (PyCFunction)gadget_EvaluateThermalConductivity, METH_VARARGS,
"evaluate the thermal coductivity for each particle"},
{"SphEvaluate", (PyCFunction)gadget_SphEvaluate, METH_VARARGS,
"compute mean value based on the sph convolution for a given number of points"},
{"SphEvaluateW", (PyCFunction)gadget_SphEvaluateW, METH_VARARGS,
"compute mean value based on the sph convolution for a given number of points. The user must specify the kind of weighting (no=0,mass=1,volue=2)"},
{"InitHsml", (PyCFunction)gadget_InitHsml, METH_VARARGS,
"Init hsml based on the three for a given number of points"},
{"Density", (PyCFunction)gadget_Density, METH_VARARGS,
"compute Density based on the three for a given number of points"},
{"NgbsW", (PyCFunction)gadget_NgbsW, METH_VARARGS,
"compute ngbs weights for a given number of points"},
{"Ngbs", (PyCFunction)gadget_Ngbs, METH_VARARGS,
"return the position of the neighbors for a given point"},
{"GetAllPositionsQ", (PyCFunction)gadget_GetAllPositionsQ, METH_VARARGS,
"get the position for each particle Q"},
{"GetAllVelocitiesQ", (PyCFunction)gadget_GetAllVelocitiesQ, METH_VARARGS,
"get the velocities for each particle Q"},
{"GetAllMassesQ", (PyCFunction)gadget_GetAllMassesQ, METH_VARARGS,
"get the mass for each particle Q"},
{"GetAllIDQ", (PyCFunction)gadget_GetAllIDQ, METH_VARARGS,
"get the ID for each particle Q"},
{"GetAllTypesQ", (PyCFunction)gadget_GetAllTypesQ, METH_VARARGS,
"get the type for each particle Q"},
{"Free", (PyCFunction)gadget_Free, METH_VARARGS,
"release memory"},
{"domain_Decomposition", (PyCFunction)gadget_domain_Decomposition, METH_VARARGS,
"call domain_Decomposition"},
{"gravity_tree", (PyCFunction)gadget_gravity_tree, METH_VARARGS,
"call gravity_tree"},
#ifdef SFR
{"set_particles_timestep", gadget_set_particles_timestep, METH_VARARGS,
"Give a time step to each particles"},
{"star_formation", gadget_star_formation, METH_VARARGS,
"compute star formation"},
{"get_id_of_new_stars", gadget_get_id_of_new_stars, METH_VARARGS,
"get id of new stars"},
#endif
#ifdef CHIMIE
{"init_chimie", gadget_init_chimie, METH_VARARGS| METH_KEYWORDS,
"init the chemistry module"},
#endif
#ifdef INTEGRAL_CONSERVING_DISSIPATION
{"icd_set_LocalDissipationOn", gadget_icd_set_LocalDissipationOn, METH_VARARGS,
"Enable local dissipation for the intergral conserving dissipation scheme"},
{"icd_set_LocalDissipationOff", gadget_icd_set_LocalDissipationOff, METH_VARARGS,
"Disable local dissipation for the intergral conserving dissipation scheme"},
{"icd_set_des_nngb", gadget_icd_set_des_nngb, METH_VARARGS,
"set number of neighbors for the intergral conserving dissipation scheme"},
{"icd_set_xc", gadget_icd_set_xc, METH_VARARGS,
"set center for the intergral conserving dissipation scheme"},
{"compute_integrals_m1", gadget_compute_integrals_m1, METH_VARARGS,
"Compute integrals needed for the intergral conserving dissipation scheme"},
{"compute_alpha_m1", gadget_compute_alpha_m1, METH_VARARGS,
"Compute alpha needed for the intergral conserving dissipation scheme"},
{"apply_transformation_m1", gadget_apply_transformation_m1, METH_VARARGS,
"apply the velocity transformation for the intergral conserving dissipation scheme"},
{"icd_find_ngbs", gadget_icd_find_ngbs, METH_VARARGS,
"find neighboring particles for the intergral conserving dissipation scheme"},
{"icd_find_ngbs", gadget_icd_find_ngbs, METH_VARARGS,
"find neighboring particles for the intergral conserving dissipation scheme"},
{"icd_allocate_numlist", gadget_icd_allocate_numlist, METH_VARARGS,
"allocate numlist particles for the intergral conserving dissipation scheme"},
{"icd_free_numlist", gadget_icd_free_numlist, METH_VARARGS,
"free numlist particles for the intergral conserving dissipation scheme"},
{"icd_get_alpha", gadget_icd_get_alpha, METH_VARARGS,
"Get alpha needed for the intergral conserving dissipation scheme"},
{"icd_get_M", gadget_icd_get_M, METH_VARARGS,
"Get mass involved for the intergral conserving dissipation scheme"},
{"icd_get_X", gadget_icd_get_X, METH_VARARGS,
"Get X involved for the intergral conserving dissipation scheme"},
{"icd_get_V", gadget_icd_get_V, METH_VARARGS,
"Get V involved for the intergral conserving dissipation scheme"},
{"icd_get_T", gadget_icd_get_T, METH_VARARGS,
"Get kinetic inergy involved for the intergral conserving dissipation scheme"},
{"icd_get_I", gadget_icd_get_I, METH_VARARGS,
"Get I inergy involved for the intergral conserving dissipation scheme"},
{"icd_get_J", gadget_icd_get_J, METH_VARARGS,
"Get J inergy involved for the intergral conserving dissipation scheme"},
{"icd_get_DeltaTmin", gadget_icd_get_DeltaTmin, METH_VARARGS,
"Get DeltaTmin for the intergral conserving dissipation scheme"},
{"get_Total_Gas_energy_kin", gadget_get_Total_Gas_energy_kin, METH_VARARGS,
"Get the total gas kinetic energy"},
#endif
#ifdef FOF
{"fof", gadget_fof, METH_VARARGS,
"compute friends of friends (call the full routine)"},
{"fof_init", gadget_fof_init, METH_VARARGS,
"init fof parameters"},
{"fof_find_densest_neighbour", gadget_fof_find_densest_neighbour, METH_VARARGS,
"find densest neighbour"},
{"fof_find_local_heads", gadget_fof_find_local_heads, METH_VARARGS,
"find local heads"},
{"fof_link_particles_to_local_head", gadget_fof_link_particles_to_local_head, METH_VARARGS,
"link particles to local head"},
{"fof_clean_local_groups", gadget_fof_clean_local_groups, METH_VARARGS,
"clean local groups"},
{"fof_compute_local_tails", gadget_fof_compute_local_tails, METH_VARARGS,
"compute local tails"},
{"fof_regroup_pseudo_heads", gadget_fof_regroup_pseudo_heads, METH_VARARGS,
"regroup pseudo heads"},
{"fof_send_and_link_pseudo_heads", gadget_fof_send_and_link_pseudo_heads, METH_VARARGS,
"send and link pseudo heads"},
{"fof_regroup_exported_pseudo_heads", gadget_fof_regroup_exported_pseudo_heads, METH_VARARGS,
"regroup exported pseudo heads"},
{"fof_write_all_groups", gadget_fof_write_all_groups, METH_VARARGS,
"write all groups"},
{"fof_allocate_groups", gadget_fof_allocate_groups, METH_VARARGS,
"allocate memory for the group structure"},
{"fof_compute_groups_properties", gadget_fof_compute_groups_properties, METH_VARARGS,
"compute groups properties"},
#ifdef SFR
{"fof_star_formation", gadget_fof_star_formation, METH_VARARGS,
"turn particles of star forming groups into stellar particles"},
{"fof_star_formation_and_IMF_sampling", gadget_fof_star_formation_and_IMF_sampling, METH_VARARGS,
"turn particles of star forming groups into stellar particles and adress them stellar properties according to an IMF"},
#endif
{"fof_free_groups", gadget_fof_free_groups, METH_VARARGS,
"release memory for the group structure"},
{"fof_get_Total_NumberOfGroups", gadget_fof_get_Total_NumberOfGroups, METH_VARARGS,
"get the total number of groups"},
{"fof_get_Total_NumberOfSfrGroups", gadget_fof_get_Total_NumberOfSfrGroups, METH_VARARGS,
"get the total number of star forming groups"},
{"fof_get_NumberOfGroups", gadget_fof_get_NumberOfGroups, METH_VARARGS,
"get the local number of groups"},
{"fof_get_IDOfParticlesInSfrGroups", gadget_fof_get_IDOfParticlesInSfrGroups, METH_VARARGS,
"get Head ID's"},
{"fof_get_HeadIDs", gadget_fof_get_HeadIDs, METH_VARARGS,
"get local Head ID's"},
#endif // FOF
#ifdef TESSEL
{"ConstructDelaunay", (PyCFunction)gadget_ConstructDelaunay, METH_VARARGS,
"Construct the Delaunay tesselation"},
{"ComputeVoronoi", (PyCFunction)gadget_ComputeVoronoi, METH_VARARGS,
"Compute the Voronoi tesselation"},
{"ComputeTesselAccelerations", (PyCFunction)gadget_ComputeTesselAccelerations, METH_VARARGS,
"Compute the acceleration using the tesselation"},
{"InitvEntropy", (PyCFunction)gadget_InitvEntropy, METH_VARARGS,
"Initialize vEntropy using internal energy."},
{"tessel_drift", (PyCFunction)gadget_tessel_drift, METH_VARARGS,
"drift particles"},
{"tessel_kick", (PyCFunction)gadget_tessel_kick, METH_VARARGS,
"kick particles"},
{"tessel_get_timestep", (PyCFunction)gadget_tessel_get_timestep, METH_VARARGS,
"get timestep for tessel"},
{"tessel_dump_triangles", (PyCFunction)gadget_tessel_dump_triangles, METH_VARARGS,
"dump triangles"},
{"tessel_dump_voronoi", (PyCFunction)gadget_tessel_dump_voronoi, METH_VARARGS,
"dump voronoi"},
{"GetAllDelaunayTriangles", (PyCFunction)gadget_GetAllDelaunayTriangles, METH_VARARGS,
"Get all the Delaunay Triangles"},
{"GetAllvPoints", gadget_GetAllvPoints, METH_VARARGS,
"Get voronoi points"},
{"GetAllvDensities", gadget_GetAllvDensities, METH_VARARGS,
"Get voronoi density of all points"},
{"GetAllvVolumes", gadget_GetAllvVolumes, METH_VARARGS,
"Get voronoi volumes of all points"},
{"GetAllvPressures", gadget_GetAllvPressures, METH_VARARGS,
"Get voronoi presures of all points"},
{"GetAllvEnergySpec", gadget_GetAllvEnergySpec, METH_VARARGS,
"Get voronoi energyspec of all points"},
{"GetAllvAccelerations", gadget_GetAllvAccelerations, METH_VARARGS,
"Get voronoi accelerations of all points"},
{"GetvPointsForOnePoint", gadget_GetvPointsForOnePoint, METH_VARARGS,
"Get voronoi points for a given point"},
{"GetNgbPointsForOnePoint", gadget_GetNgbPointsForOnePoint, METH_VARARGS,
"Get neighbors points for a given point"},
{"GetNgbPointsAndFacesForOnePoint", gadget_GetNgbPointsAndFacesForOnePoint, METH_VARARGS,
"Get neighbors points and faces for a given point"},
{"GetAllGhostPositions", gadget_GetAllGhostPositions, METH_VARARGS,
"Get all positions of the ghosts points"},
{"GetAllGhostvDensities", gadget_GetAllGhostvDensities, METH_VARARGS,
"Get all densities of the ghosts points"},
{"GetAllGhostvVolumes", gadget_GetAllGhostvVolumes, METH_VARARGS,
"Get all volumes of the ghosts points"},
#endif
{NULL, NULL, 0, NULL} /* Sentinel */
};
void initgadget(void)
{
(void) Py_InitModule("gadget", gadgetMethods);
import_array();
}
#endif /*PY_INTERFACE*/

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