Page Menu
Home
c4science
Search
Configure Global Search
Log In
Files
F96161643
bond_write.html
No One
Temporary
Actions
Download File
Edit File
Delete File
View Transforms
Subscribe
Mute Notifications
Award Token
Subscribers
None
File Metadata
Details
File Info
Storage
Attached
Created
Mon, Dec 23, 08:17
Size
8 KB
Mime Type
text/html
Expires
Wed, Dec 25, 08:17 (1 d, 19 h)
Engine
blob
Format
Raw Data
Handle
23134873
Attached To
rLAMMPS lammps
bond_write.html
View Options
<!DOCTYPE html>
<!--[if IE 8]><html class="no-js lt-ie9" lang="en" > <![endif]-->
<!--[if gt IE 8]><!-->
<html
class=
"no-js"
lang=
"en"
>
<!--<![endif]-->
<head>
<meta
charset=
"utf-8"
>
<meta
name=
"viewport"
content=
"width=device-width, initial-scale=1.0"
>
<title>
bond_write command
—
LAMMPS documentation
</title>
<link
rel=
"stylesheet"
href=
"_static/css/theme.css"
type=
"text/css"
/>
<link
rel=
"stylesheet"
href=
"_static/sphinxcontrib-images/LightBox2/lightbox2/css/lightbox.css"
type=
"text/css"
/>
<link
rel=
"top"
title=
"LAMMPS documentation"
href=
"index.html"
/>
<script
src=
"_static/js/modernizr.min.js"
></script>
</head>
<body
class=
"wy-body-for-nav"
role=
"document"
>
<div
class=
"wy-grid-for-nav"
>
<nav
data-toggle=
"wy-nav-shift"
class=
"wy-nav-side"
>
<div
class=
"wy-side-nav-search"
>
<a
href=
"Manual.html"
class=
"icon icon-home"
>
LAMMPS
</a>
<div
role=
"search"
>
<form
id=
"rtd-search-form"
class=
"wy-form"
action=
"search.html"
method=
"get"
>
<input
type=
"text"
name=
"q"
placeholder=
"Search docs"
/>
<input
type=
"hidden"
name=
"check_keywords"
value=
"yes"
/>
<input
type=
"hidden"
name=
"area"
value=
"default"
/>
</form>
</div>
</div>
<div
class=
"wy-menu wy-menu-vertical"
data-spy=
"affix"
role=
"navigation"
aria-label=
"main navigation"
>
<ul>
<li
class=
"toctree-l1"
><a
class=
"reference internal"
href=
"Section_intro.html"
>
1. Introduction
</a></li>
<li
class=
"toctree-l1"
><a
class=
"reference internal"
href=
"Section_start.html"
>
2. Getting Started
</a></li>
<li
class=
"toctree-l1"
><a
class=
"reference internal"
href=
"Section_commands.html"
>
3. Commands
</a></li>
<li
class=
"toctree-l1"
><a
class=
"reference internal"
href=
"Section_packages.html"
>
4. Packages
</a></li>
<li
class=
"toctree-l1"
><a
class=
"reference internal"
href=
"Section_accelerate.html"
>
5. Accelerating LAMMPS performance
</a></li>
<li
class=
"toctree-l1"
><a
class=
"reference internal"
href=
"Section_howto.html"
>
6. How-to discussions
</a></li>
<li
class=
"toctree-l1"
><a
class=
"reference internal"
href=
"Section_example.html"
>
7. Example problems
</a></li>
<li
class=
"toctree-l1"
><a
class=
"reference internal"
href=
"Section_perf.html"
>
8. Performance
&
scalability
</a></li>
<li
class=
"toctree-l1"
><a
class=
"reference internal"
href=
"Section_tools.html"
>
9. Additional tools
</a></li>
<li
class=
"toctree-l1"
><a
class=
"reference internal"
href=
"Section_modify.html"
>
10. Modifying
&
extending LAMMPS
</a></li>
<li
class=
"toctree-l1"
><a
class=
"reference internal"
href=
"Section_python.html"
>
11. Python interface to LAMMPS
</a></li>
<li
class=
"toctree-l1"
><a
class=
"reference internal"
href=
"Section_errors.html"
>
12. Errors
</a></li>
<li
class=
"toctree-l1"
><a
class=
"reference internal"
href=
"Section_history.html"
>
13. Future and history
</a></li>
</ul>
</div>
</nav>
<section
data-toggle=
"wy-nav-shift"
class=
"wy-nav-content-wrap"
>
<nav
class=
"wy-nav-top"
role=
"navigation"
aria-label=
"top navigation"
>
<i
data-toggle=
"wy-nav-top"
class=
"fa fa-bars"
></i>
<a
href=
"Manual.html"
>
LAMMPS
</a>
</nav>
<div
class=
"wy-nav-content"
>
<div
class=
"rst-content"
>
<div
role=
"navigation"
aria-label=
"breadcrumbs navigation"
>
<ul
class=
"wy-breadcrumbs"
>
<li><a
href=
"Manual.html"
>
Docs
</a>
»
</li>
<li>
bond_write command
</li>
<li
class=
"wy-breadcrumbs-aside"
>
<a
href=
"http://lammps.sandia.gov"
>
Website
</a>
<a
href=
"Section_commands.html#comm"
>
Commands
</a>
</li>
</ul>
<hr/>
</div>
<div
role=
"main"
class=
"document"
itemscope=
"itemscope"
itemtype=
"http://schema.org/Article"
>
<div
itemprop=
"articleBody"
>
<div
class=
"section"
id=
"bond-write-command"
>
<span
id=
"index-0"
></span><h1>
bond_write command
</h1>
<div
class=
"section"
id=
"syntax"
>
<h2>
Syntax
</h2>
<div
class=
"highlight-default"
><div
class=
"highlight"
><pre><span></span><span
class=
"n"
>
bond_write
</span>
<span
class=
"n"
>
btype
</span>
<span
class=
"n"
>
N
</span>
<span
class=
"n"
>
inner
</span>
<span
class=
"n"
>
outer
</span>
<span
class=
"n"
>
file
</span>
<span
class=
"n"
>
keyword
</span>
<span
class=
"n"
>
itype
</span>
<span
class=
"n"
>
jtype
</span>
</pre></div>
</div>
<ul
class=
"simple"
>
<li>
btype = bond types
</li>
<li>
N = # of values
</li>
<li>
inner,outer = inner and outer bond length (distance units)
</li>
<li>
file = name of file to write values to
</li>
<li>
keyword = section name in file for this set of tabulated values
</li>
<li>
itype,jtype = 2 atom types (optional)
</li>
<li></li>
</ul>
</div>
<div
class=
"section"
id=
"examples"
>
<h2>
Examples
</h2>
<div
class=
"highlight-default"
><div
class=
"highlight"
><pre><span></span><span
class=
"n"
>
bond_write
</span>
<span
class=
"mi"
>
1
</span>
<span
class=
"mi"
>
500
</span>
<span
class=
"mf"
>
0.5
</span>
<span
class=
"mf"
>
3.5
</span>
<span
class=
"n"
>
table
</span><span
class=
"o"
>
.
</span><span
class=
"n"
>
txt
</span>
<span
class=
"n"
>
Harmonic_1
</span>
<span
class=
"n"
>
bond_write
</span>
<span
class=
"mi"
>
3
</span>
<span
class=
"mi"
>
1000
</span>
<span
class=
"mf"
>
0.1
</span>
<span
class=
"mf"
>
6.0
</span>
<span
class=
"n"
>
table
</span><span
class=
"o"
>
.
</span><span
class=
"n"
>
txt
</span>
<span
class=
"n"
>
Morse
</span>
</pre></div>
</div>
</div>
<div
class=
"section"
id=
"description"
>
<h2>
Description
</h2>
<p>
Write energy and force values to a file as a function of distance for
the currently defined bond potential. This is useful for plotting the
potential function or otherwise debugging its values. If the file
already exists, the table of values is appended to the end of the file
to allow multiple tables of energy and force to be included in one
file.
</p>
<p>
The energy and force values are computed at distances from inner to
outer for 2 interacting atoms forming a bond of type btype, using the
appropriate
<a
class=
"reference internal"
href=
"bond_coeff.html"
><span
class=
"doc"
>
bond_coeff
</span></a>
coefficients. N evenly spaced
distances are used.
</p>
<p>
For example, for N = 7, inner = 1.0, and outer = 4.0,
values are computed at r = 1.0, 1.5, 2.0, 2.5, 3.0, 3.5, 4.0.
</p>
<p>
The file is written in the format used as input for the
<a
class=
"reference internal"
href=
"bond_style.html"
><span
class=
"doc"
>
bond_style
</span></a>
<em>
table
</em>
option with
<em>
keyword
</em>
as the
section name. Each line written to the file lists an index number
(1-N), a distance (in distance units), an energy (in energy units),
and a force (in force units).
</p>
</div>
<div
class=
"section"
id=
"restrictions"
>
<h2>
Restrictions
</h2>
<p>
All force field coefficients for bond and other kinds of interactions
must be set before this command can be invoked.
</p>
<p>
Due to how the bond force is computed, an inner value
>
0.0 must
be specified even if the potential has a finite value at r = 0.0.
</p>
</div>
<div
class=
"section"
id=
"related-commands"
>
<h2>
Related commands
</h2>
<p><a
class=
"reference internal"
href=
"bond_table.html"
><span
class=
"doc"
>
bond_style table
</span></a>
,
<a
class=
"reference internal"
href=
"bond_style.html"
><span
class=
"doc"
>
bond_style
</span></a>
,
<a
class=
"reference internal"
href=
"bond_coeff.html"
><span
class=
"doc"
>
bond_coeff
</span></a></p>
<p><strong>
Default:
</strong>
none
</p>
</div>
</div>
</div>
</div>
<footer>
<hr/>
<div
role=
"contentinfo"
>
<p>
©
Copyright 2013 Sandia Corporation.
</p>
</div>
Built with
<a
href=
"http://sphinx-doc.org/"
>
Sphinx
</a>
using a
<a
href=
"https://github.com/snide/sphinx_rtd_theme"
>
theme
</a>
provided by
<a
href=
"https://readthedocs.org"
>
Read the Docs
</a>
.
</footer>
</div>
</div>
</section>
</div>
<script
type=
"text/javascript"
>
var
DOCUMENTATION_OPTIONS
=
{
URL_ROOT
:
'./'
,
VERSION
:
''
,
COLLAPSE_INDEX
:
false
,
FILE_SUFFIX
:
'.html'
,
HAS_SOURCE
:
true
};
</script>
<script
type=
"text/javascript"
src=
"_static/jquery.js"
></script>
<script
type=
"text/javascript"
src=
"_static/underscore.js"
></script>
<script
type=
"text/javascript"
src=
"_static/doctools.js"
></script>
<script
type=
"text/javascript"
src=
"https://cdn.mathjax.org/mathjax/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML"
></script>
<script
type=
"text/javascript"
src=
"_static/sphinxcontrib-images/LightBox2/lightbox2/js/jquery-1.11.0.min.js"
></script>
<script
type=
"text/javascript"
src=
"_static/sphinxcontrib-images/LightBox2/lightbox2/js/lightbox.min.js"
></script>
<script
type=
"text/javascript"
src=
"_static/sphinxcontrib-images/LightBox2/lightbox2-customize/jquery-noconflict.js"
></script>
<script
type=
"text/javascript"
src=
"_static/js/theme.js"
></script>
<script
type=
"text/javascript"
>
jQuery
(
function
()
{
SphinxRtdTheme
.
StickyNav
.
enable
();
});
</script>
</body>
</html>
Event Timeline
Log In to Comment