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add adjacency matrices and functional group information

Authored by puckvg on Tue, Nov 16, 16:11.

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add adjacency matrices and functional group information

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puckvgTue, Nov 16, 16:11
Pushed
puckvgTue, Nov 16, 16:11
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R11301:1463d851f136: Improved output runtime; now prints old positions (indices+1) before…
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