Diffusion eSCT pipeline interoperability 9f72c32f6675

Removing MelArray repo from master branch
9f72c32f6675
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Authored by laurenczy on May 7 2018, 14:28.

Description

Removing MelArray repo from master branch

Details

Committed

laurenczy

May 7 2018, 14:28

Pushed

laurenczy

May 7 2018, 14:28

Parents

R2915:d6189be88816: Typo

Branches

Unknown

Tags

Unknown

References

HEAD -> master

Event Timeline

laurenczy committed R2915:9f72c32f6675: Removing MelArray repo from master branch (authored by laurenczy).May 7 2018, 14:28

Changes (44)

				Path
	D			SIS/MelArray
	D			SIS/MelArray/README.md
	D			SIS/MelArray/Snakefile
	D			SIS/MelArray/create_validation.sh
	D			SIS/MelArray/data
	D			SIS/MelArray/data/extra_files
	D			SIS/MelArray/data/extra_files/put_here_the_bed_and_tumor_normal_and_interval_files
	D			SIS/MelArray/other
	D			SIS/MelArray/other/enhancer_png
	D			SIS/MelArray/other/enhancer_png/melarray_v5p2_dag_sub_hori.png
	D			SIS/MelArray/other/enhancer_png/melarray_v5p2_rulegraph_all_hori_marked.png
	D			SIS/MelArray/other/enhancer_png/melarray_v5p2_rulegraph_sub_hori.png
	D			SIS/MelArray/pipeline
	D			SIS/MelArray/pipeline/configs
	D			SIS/MelArray/pipeline/configs/config.yaml
	D			SIS/MelArray/pipeline/configs/config_enhancer.yaml
	D			SIS/MelArray/pipeline/configs/melarray_deploy_enhancer_SGE.yaml
	D			SIS/MelArray/pipeline/configs/melarray_deploy_enhancer_lsf.yaml
	D			SIS/MelArray/pipeline/scripts
	D			SIS/MelArray/pipeline/scripts/get_tumor_normal_dict.py
	D			SIS/MelArray/pipeline/scripts/load_config.py
	D			SIS/MelArray/pipeline/scripts/overwrite_config.py
	D			SIS/MelArray/pipeline/scripts/parse_ids.py
	D			SIS/MelArray/pipeline/scripts/replace_in_config.py
	D			SIS/MelArray/pipeline/subworkflows
	D			SIS/MelArray/pipeline/subworkflows/AnaCovar.snake
	D			SIS/MelArray/pipeline/subworkflows/Fusion.snake
	D			SIS/MelArray/pipeline/subworkflows/GATK.snake
	D			SIS/MelArray/pipeline/subworkflows/HaploCaller.snake
	D			SIS/MelArray/pipeline/subworkflows/Mixcr.snake
	D			SIS/MelArray/pipeline/subworkflows/OptiType.snake
	D			SIS/MelArray/pipeline/subworkflows/QC.snake
	D			SIS/MelArray/pipeline/subworkflows/Sequenza.snake
	D			SIS/MelArray/pipeline/subworkflows/TrimAlign.snake
	D			SIS/MelArray/pipeline/subworkflows/VariantAnnotation.snake
	D			SIS/MelArray/pipeline/subworkflows/VariantCaller.snake
	D			SIS/MelArray/ref
	D			SIS/MelArray/ref/hg19
	D			SIS/MelArray/ref/hg19/put_here_the_reference_files
	D			SIS/MelArray/ref/hg38
	D			SIS/MelArray/ref/hg38/put_here_the_reference_files
	D			SIS/MelArray/ref_validation.md5
	D			SIS/MelArray/run_SGE.sh
	D			SIS/MelArray/run_lsf.sh