Added ShoulderModel_rTSA
07fe7aaf51b9
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Authored by aterrier on Apr 2 2019, 15:14.

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Added ShoulderModel_rTSA

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Committed

aterrier

Apr 2 2019, 15:14

Pushed

aterrier

Apr 2 2019, 15:15

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R4970:5af7c010655f: Added ShoulderModel_NoElbow

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aterrier committed R4970:07fe7aaf51b9: Added ShoulderModel_rTSA (authored by aterrier).Apr 2 2019, 15:14

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		Path
A	(dir)	ShoulderModel_rTSA/
A		ShoulderModel_rTSA/.DS_Store
A	(dir)	ShoulderModel_rTSA/Data_Structures_and_Documentation/
A		ShoulderModel_rTSA/Data_Structures_and_Documentation/.DS_Store
A		ShoulderModel_rTSA/Data_Structures_and_Documentation/BLDATA.mat
A		ShoulderModel_rTSA/Data_Structures_and_Documentation/BLDATA_MOD.mat
A		ShoulderModel_rTSA/Data_Structures_and_Documentation/BLDATA_VHP.mat
A		ShoulderModel_rTSA/Data_Structures_and_Documentation/DYDATA.mat
A		ShoulderModel_rTSA/Data_Structures_and_Documentation/DYDATA_MOD.mat
A		ShoulderModel_rTSA/Data_Structures_and_Documentation/DYDATA_VHP.mat
A		ShoulderModel_rTSA/Data_Structures_and_Documentation/EFDATA_140ABD_2.mat
A		ShoulderModel_rTSA/Data_Structures_and_Documentation/EFDATA_140ABD_20.mat
A		ShoulderModel_rTSA/Data_Structures_and_Documentation/EFDATA_MOD.mat
A		ShoulderModel_rTSA/Data_Structures_and_Documentation/EFDATA_VHP.mat
A		ShoulderModel_rTSA/Data_Structures_and_Documentation/JCDATA_MOD.mat
A		ShoulderModel_rTSA/Data_Structures_and_Documentation/JCDATA_VHP.mat
A		ShoulderModel_rTSA/Data_Structures_and_Documentation/JRDATA_MOD.mat
A		ShoulderModel_rTSA/Data_Structures_and_Documentation/JRDATA_SA_2.mat
A		ShoulderModel_rTSA/Data_Structures_and_Documentation/JRDATA_SA_20.mat
A		ShoulderModel_rTSA/Data_Structures_and_Documentation/JRDATA_VHP.mat
A		ShoulderModel_rTSA/Data_Structures_and_Documentation/KEDATA.mat
A		ShoulderModel_rTSA/Data_Structures_and_Documentation/KEDATA_MOD.mat
A		ShoulderModel_rTSA/Data_Structures_and_Documentation/KEDATA_VHP.mat
A		ShoulderModel_rTSA/Data_Structures_and_Documentation/MADATA.mat
A		ShoulderModel_rTSA/Data_Structures_and_Documentation/MADATA_MOD.mat
A		ShoulderModel_rTSA/Data_Structures_and_Documentation/MADATA_VHP.mat
A		ShoulderModel_rTSA/Data_Structures_and_Documentation/MEDATA.mat
A		ShoulderModel_rTSA/Data_Structures_and_Documentation/MEDATA_MOD.mat
A		ShoulderModel_rTSA/Data_Structures_and_Documentation/MEDATA_VHP.mat
A		ShoulderModel_rTSA/Data_Structures_and_Documentation/MWDATA.mat
A		ShoulderModel_rTSA/Data_Structures_and_Documentation/MWDATA_MOD.mat
A		ShoulderModel_rTSA/Data_Structures_and_Documentation/MWDATA_VHP.mat
A	(dir)	ShoulderModel_rTSA/Data_Structures_and_Documentation/ModM_Model/
A		ShoulderModel_rTSA/Data_Structures_and_Documentation/ModM_Model/BLDATA.mat
A		ShoulderModel_rTSA/Data_Structures_and_Documentation/ModM_Model/DYDATA.mat
A		ShoulderModel_rTSA/Data_Structures_and_Documentation/ModM_Model/EFDATA.mat
A		ShoulderModel_rTSA/Data_Structures_and_Documentation/ModM_Model/JCDATA.mat
A		ShoulderModel_rTSA/Data_Structures_and_Documentation/ModM_Model/JRDATA.mat
A		ShoulderModel_rTSA/Data_Structures_and_Documentation/ModM_Model/KEDATA.mat
A		ShoulderModel_rTSA/Data_Structures_and_Documentation/ModM_Model/MADATA.mat
A		ShoulderModel_rTSA/Data_Structures_and_Documentation/ModM_Model/MEDATA.mat
A		ShoulderModel_rTSA/Data_Structures_and_Documentation/ModM_Model/MWDATA.mat
A		ShoulderModel_rTSA/Data_Structures_and_Documentation/ModM_Model/REDATA.mat
A	(dir)	ShoulderModel_rTSA/Data_Structures_and_Documentation/Orignal_Model/
A		ShoulderModel_rTSA/Data_Structures_and_Documentation/Orignal_Model/BLDATA.mat
A		ShoulderModel_rTSA/Data_Structures_and_Documentation/Orignal_Model/DYDATA.mat
A		ShoulderModel_rTSA/Data_Structures_and_Documentation/Orignal_Model/EFDATA.mat
A		ShoulderModel_rTSA/Data_Structures_and_Documentation/Orignal_Model/JCDATA.mat
A		ShoulderModel_rTSA/Data_Structures_and_Documentation/Orignal_Model/JRDATA.mat
A		ShoulderModel_rTSA/Data_Structures_and_Documentation/Orignal_Model/KEDATA.mat
A		ShoulderModel_rTSA/Data_Structures_and_Documentation/Orignal_Model/MADATA.mat
A		ShoulderModel_rTSA/Data_Structures_and_Documentation/Orignal_Model/MEDATA.mat
A		ShoulderModel_rTSA/Data_Structures_and_Documentation/Orignal_Model/MWDATA.mat
A		ShoulderModel_rTSA/Data_Structures_and_Documentation/Orignal_Model/REDATA.mat
A		ShoulderModel_rTSA/Data_Structures_and_Documentation/REDATA.mat
A		ShoulderModel_rTSA/Data_Structures_and_Documentation/REDATA_MOD.mat
A		ShoulderModel_rTSA/Data_Structures_and_Documentation/REDATA_VHP.mat
A		ShoulderModel_rTSA/Data_Structures_and_Documentation/Visualise_Data.m
A		ShoulderModel_rTSA/Data_Structures_and_Documentation/forces.m
A	(dir)	ShoulderModel_rTSA/EMG_based_muscle_force/
A		ShoulderModel_rTSA/EMG_based_muscle_force/EMG_based_force_prediction.m
A		ShoulderModel_rTSA/EMG_based_muscle_force/contraction_statespace.m
A		ShoulderModel_rTSA/EMG_based_muscle_force/muscle_activation_dynamics.m
A		ShoulderModel_rTSA/EMG_based_muscle_force/muscle_contraction_dynamics.m
A		ShoulderModel_rTSA/EMG_based_muscle_force/muscle_contraction_statics.m
A	(dir)	ShoulderModel_rTSA/Generic_Measurements/
A		ShoulderModel_rTSA/Generic_Measurements/.DS_Store
A	(dir)	ShoulderModel_rTSA/Generic_Measurements/EMG/
A		ShoulderModel_rTSA/Generic_Measurements/EMG/.DS_Store
A		ShoulderModel_rTSA/Generic_Measurements/EMG/excitation_act_1.mat
A		ShoulderModel_rTSA/Generic_Measurements/EMG/excitation_act_10.mat
A		ShoulderModel_rTSA/Generic_Measurements/EMG/excitation_act_11.mat
A		ShoulderModel_rTSA/Generic_Measurements/EMG/excitation_act_12.mat
A		ShoulderModel_rTSA/Generic_Measurements/EMG/excitation_act_2.mat
A		ShoulderModel_rTSA/Generic_Measurements/EMG/excitation_act_3.mat
A		ShoulderModel_rTSA/Generic_Measurements/EMG/excitation_act_4.mat
A		ShoulderModel_rTSA/Generic_Measurements/EMG/excitation_act_5.mat
A		ShoulderModel_rTSA/Generic_Measurements/EMG/excitation_act_6.mat
A		ShoulderModel_rTSA/Generic_Measurements/EMG/excitation_act_7.mat
A		ShoulderModel_rTSA/Generic_Measurements/EMG/excitation_act_8.mat
A		ShoulderModel_rTSA/Generic_Measurements/EMG/excitation_act_9.mat
A		ShoulderModel_rTSA/Generic_Measurements/InfoAboutMeasurements.txt
A	(dir)	ShoulderModel_rTSA/Generic_Measurements/kinematics/
A		ShoulderModel_rTSA/Generic_Measurements/kinematics/arow_measured_landmarks.mat
A		ShoulderModel_rTSA/Generic_Measurements/kinematics/kinematics_act_1.mat
A		ShoulderModel_rTSA/Generic_Measurements/kinematics/kinematics_act_12.mat
A		ShoulderModel_rTSA/Generic_Measurements/kinematics/kinematics_act_2.mat
A		ShoulderModel_rTSA/Generic_Measurements/kinematics/kinematics_act_3.mat
A		ShoulderModel_rTSA/Generic_Measurements/kinematics/kinematics_act_4.mat
A		ShoulderModel_rTSA/Generic_Measurements/kinematics/kinematics_act_5.mat
A		ShoulderModel_rTSA/Generic_Measurements/kinematics/kinematics_act_6.mat
A		ShoulderModel_rTSA/Generic_Measurements/kinematics/kinematics_act_7.mat
A		ShoulderModel_rTSA/Generic_Measurements/kinematics/kinematics_act_8.mat
A		ShoulderModel_rTSA/Generic_Measurements/kinematics/kinematics_act_9.mat
A		ShoulderModel_rTSA/Generic_Measurements/kinematics/lrow_measured_landmarks.mat
A		ShoulderModel_rTSA/Generic_Measurements/kinematics/urow_measured_landmarks.mat
A	(dir)	ShoulderModel_rTSA/INITIALISATION_Dataset/
A		ShoulderModel_rTSA/INITIALISATION_Dataset/.DS_Store
A		ShoulderModel_rTSA/INITIALISATION_Dataset/1MAIN_INITIALISATION_build_data_dynamics_noequations.m
A		ShoulderModel_rTSA/INITIALISATION_Dataset/AnatomicLandmarks.dat
A		ShoulderModel_rTSA/INITIALISATION_Dataset/AnatomicLandmarksold.dat
A		ShoulderModel_rTSA/INITIALISATION_Dataset/MAIN_INITIALISATION_build_data_3D_meshing.m
A		ShoulderModel_rTSA/INITIALISATION_Dataset/MAIN_INITIALISATION_build_data_bony_landmark.m
A		ShoulderModel_rTSA/INITIALISATION_Dataset/MAIN_INITIALISATION_build_data_dynamics.m
A		ShoulderModel_rTSA/INITIALISATION_Dataset/MAIN_INITIALISATION_build_data_joint_sinus_cone.m
A		ShoulderModel_rTSA/INITIALISATION_Dataset/MAIN_INITIALISATION_build_data_kinematics.m
A		ShoulderModel_rTSA/INITIALISATION_Dataset/MAIN_INITIALISATION_build_data_muscle_wrapping.m
A		ShoulderModel_rTSA/INITIALISATION_Dataset/MAIN_INITIALISATION_build_data_muscle_wrapping_new.m
A		ShoulderModel_rTSA/INITIALISATION_Dataset/MAIN_INITIALISATION_build_data_muscle_wrapping_old.m
A		ShoulderModel_rTSA/INITIALISATION_Dataset/MAIN_INITIALISATION_build_data_ribcage_ellipsoid.m
A		ShoulderModel_rTSA/INITIALISATION_Dataset/MuscleLandmarks_Male01.dat
A		ShoulderModel_rTSA/INITIALISATION_Dataset/MuscleLandmarks_Male011.dat
A		ShoulderModel_rTSA/INITIALISATION_Dataset/MuscleLandmarks_Male_try0.dat
A		ShoulderModel_rTSA/INITIALISATION_Dataset/changes_landmarks_obstacles.m
A	(dir)	ShoulderModel_rTSA/LOGOS/
A		ShoulderModel_rTSA/LOGOS/.DS_Store
A		ShoulderModel_rTSA/LOGOS/CHUVLogo.png
A		ShoulderModel_rTSA/LOGOS/EPFLLogo.png
A		ShoulderModel_rTSA/LOGOS/JointsFigure.eps
A		ShoulderModel_rTSA/LOGOS/JointsFigure.png
A		ShoulderModel_rTSA/LOGOS/JointsFigure2.png
A		ShoulderModel_rTSA/LOGOS/LALogo.jpg
A		ShoulderModel_rTSA/LOGOS/LBOLogo.png
A		ShoulderModel_rTSA/LOGOS/MAINPix.png
A		ShoulderModel_rTSA/LOGOS/MusclesFigure.eps
A		ShoulderModel_rTSA/LOGOS/MusclesFigure.png
A		ShoulderModel_rTSA/LOGOS/MusclesFigure2.eps
A		ShoulderModel_rTSA/LOGOS/MusclesFigure2.png
A		ShoulderModel_rTSA/MADATA.mat
A		ShoulderModel_rTSA/MAIN_TOOL_geometry_functions.m
A		ShoulderModel_rTSA/MAIN_TOOL_save_data.m
A		ShoulderModel_rTSA/MAIN_TOOL_save_visualisation.m
A		ShoulderModel_rTSA/MAIN_TOOL_script_generator.m
A		ShoulderModel_rTSA/MAIN_TOOL_update_visualisation.m
A		ShoulderModel_rTSA/MASTHEAD_script.m
A		ShoulderModel_rTSA/MODEL_MAIN_FILE.m
A	(dir)	ShoulderModel_rTSA/PostProcessing/
A		ShoulderModel_rTSA/PostProcessing/EFDATA_CSA25.mat
A		ShoulderModel_rTSA/PostProcessing/EFDATA_CSA33.mat
A		ShoulderModel_rTSA/PostProcessing/EFDATA_CSA41.mat
A		ShoulderModel_rTSA/PostProcessing/JRDATA_CSA25.mat
A		ShoulderModel_rTSA/PostProcessing/JRDATA_CSA33.mat
A		ShoulderModel_rTSA/PostProcessing/JRDATA_CSA41.mat
A		ShoulderModel_rTSA/PostProcessing/KEDATA_CSA25.mat
A		ShoulderModel_rTSA/PostProcessing/KEDATA_CSA33.mat
A		ShoulderModel_rTSA/PostProcessing/KEDATA_CSA41.mat
A		ShoulderModel_rTSA/PostProcessing/postprocessing.m
A		ShoulderModel_rTSA/README.txt
A	(dir)	ShoulderModel_rTSA/TOOLBOX_Force_Estimation/
A		ShoulderModel_rTSA/TOOLBOX_Force_Estimation/ESTIMATION_TOOL_EMG_to_force.m
A		ShoulderModel_rTSA/TOOLBOX_Force_Estimation/ESTIMATION_TOOL_Load_EMG.m
A		ShoulderModel_rTSA/TOOLBOX_Force_Estimation/ESTIMATION_TOOL_acceleration_file.m
A		ShoulderModel_rTSA/TOOLBOX_Force_Estimation/ESTIMATION_TOOL_constraints_file.m
A		ShoulderModel_rTSA/TOOLBOX_Force_Estimation/ESTIMATION_TOOL_dynamics_file.m
A		ShoulderModel_rTSA/TOOLBOX_Force_Estimation/ESTIMATION_TOOL_estimate_forces.m
A		ShoulderModel_rTSA/TOOLBOX_Force_Estimation/ESTIMATION_TOOL_get_dynamics.m
A		ShoulderModel_rTSA/TOOLBOX_Force_Estimation/ESTIMATION_TOOL_glenoid_cone_make.m
A		ShoulderModel_rTSA/TOOLBOX_Force_Estimation/ESTIMATION_TOOL_main_file.m
A		ShoulderModel_rTSA/TOOLBOX_Force_Estimation/ESTIMATION_TOOL_maximum_muscle_forces.m
A		ShoulderModel_rTSA/TOOLBOX_Force_Estimation/ESTIMATION_TOOL_menu_functions.m
A		ShoulderModel_rTSA/TOOLBOX_Force_Estimation/ESTIMATION_TOOL_run_optimisation.m
A		ShoulderModel_rTSA/TOOLBOX_Force_Estimation/ESTIMATION_TOOL_run_optimisation_old.m~
A		ShoulderModel_rTSA/TOOLBOX_Force_Estimation/ESTIMATION_TOOL_run_optimisation_try2.m
A		ShoulderModel_rTSA/TOOLBOX_Force_Estimation/ESTIMATION_TOOL_script_generator.m
A		ShoulderModel_rTSA/TOOLBOX_Force_Estimation/ESTIMATION_TOOL_view_data_script.m
A		ShoulderModel_rTSA/TOOLBOX_Force_Estimation/ESTIMATION_TOOL_visualisation_script.m
A	(dir)	ShoulderModel_rTSA/TOOLBOX_Initial_Configuration/
A		ShoulderModel_rTSA/TOOLBOX_Initial_Configuration/INITIAL_CONFIGURATION_main_file.m
A		ShoulderModel_rTSA/TOOLBOX_Initial_Configuration/INITIAL_CONFIGURATION_reset_angles.m
A		ShoulderModel_rTSA/TOOLBOX_Initial_Configuration/INITIAL_CONFIGURATION_script_generator.m
A		ShoulderModel_rTSA/TOOLBOX_Initial_Configuration/INITIAL_CONFIGURATION_slider_modification.m
A		ShoulderModel_rTSA/TOOLBOX_Initial_Configuration/INITIAL_CONFIGURATION_update_visualisation.m
A	(dir)	ShoulderModel_rTSA/TOOLBOX_Joint_Sinus_Cones/
A		ShoulderModel_rTSA/TOOLBOX_Joint_Sinus_Cones/JOINT_CONE_TOOL_change_cone.m
A		ShoulderModel_rTSA/TOOLBOX_Joint_Sinus_Cones/JOINT_CONE_TOOL_main_file.m
A		ShoulderModel_rTSA/TOOLBOX_Joint_Sinus_Cones/JOINT_CONE_TOOL_reset_values.m
A		ShoulderModel_rTSA/TOOLBOX_Joint_Sinus_Cones/JOINT_CONE_TOOL_script_generator.m
A	(dir)	ShoulderModel_rTSA/TOOLBOX_Kinematics/
A		ShoulderModel_rTSA/TOOLBOX_Kinematics/KINEMATICS_TOOL_Estimate_Landmarks.m
A		ShoulderModel_rTSA/TOOLBOX_Kinematics/KINEMATICS_TOOL_GH_Estimation.m
A		ShoulderModel_rTSA/TOOLBOX_Kinematics/KINEMATICS_TOOL_build_TS.m
A		ShoulderModel_rTSA/TOOLBOX_Kinematics/KINEMATICS_TOOL_build_motion.m
A		ShoulderModel_rTSA/TOOLBOX_Kinematics/KINEMATICS_TOOL_click_on_script.m
A		ShoulderModel_rTSA/TOOLBOX_Kinematics/KINEMATICS_TOOL_compute_kinematics.m
A		ShoulderModel_rTSA/TOOLBOX_Kinematics/KINEMATICS_TOOL_data_filteration.m
A		ShoulderModel_rTSA/TOOLBOX_Kinematics/KINEMATICS_TOOL_four_sphere_intersect.m
A		ShoulderModel_rTSA/TOOLBOX_Kinematics/KINEMATICS_TOOL_get_TS_intersect_coordinate.m
A		ShoulderModel_rTSA/TOOLBOX_Kinematics/KINEMATICS_TOOL_get_initial_values.m
A		ShoulderModel_rTSA/TOOLBOX_Kinematics/KINEMATICS_TOOL_give_fiacco.m
A		ShoulderModel_rTSA/TOOLBOX_Kinematics/KINEMATICS_TOOL_intersection_identification.m
A		ShoulderModel_rTSA/TOOLBOX_Kinematics/KINEMATICS_TOOL_lost_factor.m
A		ShoulderModel_rTSA/TOOLBOX_Kinematics/KINEMATICS_TOOL_main_file.m
A		ShoulderModel_rTSA/TOOLBOX_Kinematics/KINEMATICS_TOOL_menu_functions.m
A		ShoulderModel_rTSA/TOOLBOX_Kinematics/KINEMATICS_TOOL_nonlinear_constraints.m
A		ShoulderModel_rTSA/TOOLBOX_Kinematics/KINEMATICS_TOOL_parameter_bounds.m
A		ShoulderModel_rTSA/TOOLBOX_Kinematics/KINEMATICS_TOOL_reconstruct_motion.m
A		ShoulderModel_rTSA/TOOLBOX_Kinematics/KINEMATICS_TOOL_reconstruction_main_file.m
A		ShoulderModel_rTSA/TOOLBOX_Kinematics/KINEMATICS_TOOL_reconstruction_script_generator.m
A		ShoulderModel_rTSA/TOOLBOX_Kinematics/KINEMATICS_TOOL_ruled_surface_parameters.m
A		ShoulderModel_rTSA/TOOLBOX_Kinematics/KINEMATICS_TOOL_script_generator.m
A		ShoulderModel_rTSA/TOOLBOX_Kinematics/KINEMATICS_TOOL_three_sphere_intersect.m
A		ShoulderModel_rTSA/TOOLBOX_Kinematics/KINEMATICS_TOOL_tracking_cost.m
A		ShoulderModel_rTSA/TOOLBOX_Kinematics/KINEMATICS_TOOL_two_sphere_intersect.m
A		ShoulderModel_rTSA/TOOLBOX_Kinematics/KINEMATICS_TOOL_update_uicontrols.m
A		ShoulderModel_rTSA/TOOLBOX_Kinematics/KINEMATICS_TOOL_v_of_u.m
A		ShoulderModel_rTSA/TOOLBOX_Kinematics/KINEMATICS_TOOL_view_kinematics_script.m
A		ShoulderModel_rTSA/TOOLBOX_Kinematics/KINEMATICS_TOOL_view_motion_script.m
A		ShoulderModel_rTSA/TOOLBOX_Kinematics/KINEMATICS_TOOL_view_reconstructed-motion.m~
A		ShoulderModel_rTSA/TOOLBOX_Kinematics/KINEMATICS_TOOL_view_reconstructed_motion.m
A	(dir)	ShoulderModel_rTSA/TOOLBOX_Moment_Arms/
A		ShoulderModel_rTSA/TOOLBOX_Moment_Arms/MOMENT_ARM_TOOL_click_figure_script.m
A		ShoulderModel_rTSA/TOOLBOX_Moment_Arms/MOMENT_ARM_TOOL_compute_all.m
A		ShoulderModel_rTSA/TOOLBOX_Moment_Arms/MOMENT_ARM_TOOL_compute_moment_arms.m
A		ShoulderModel_rTSA/TOOLBOX_Moment_Arms/MOMENT_ARM_TOOL_main_file.m
A		ShoulderModel_rTSA/TOOLBOX_Moment_Arms/MOMENT_ARM_TOOL_projection_matrices.m
A		ShoulderModel_rTSA/TOOLBOX_Moment_Arms/MOMENT_ARM_TOOL_script_generator.m
A	(dir)	ShoulderModel_rTSA/TOOLBOX_Muscle_Geometry/
A		ShoulderModel_rTSA/TOOLBOX_Muscle_Geometry/MUSCLE_TOOL_adjust_radius.m
A		ShoulderModel_rTSA/TOOLBOX_Muscle_Geometry/MUSCLE_TOOL_build_muscle.m
A		ShoulderModel_rTSA/TOOLBOX_Muscle_Geometry/MUSCLE_TOOL_compute_teta_w.m
A		ShoulderModel_rTSA/TOOLBOX_Muscle_Geometry/MUSCLE_TOOL_compute_wrapping.m
A		ShoulderModel_rTSA/TOOLBOX_Muscle_Geometry/MUSCLE_TOOL_cylinder_wrap.m
A		ShoulderModel_rTSA/TOOLBOX_Muscle_Geometry/MUSCLE_TOOL_dcylinder_wrap.m
A		ShoulderModel_rTSA/TOOLBOX_Muscle_Geometry/MUSCLE_TOOL_geometry_functions.m
A		ShoulderModel_rTSA/TOOLBOX_Muscle_Geometry/MUSCLE_TOOL_main_file.m
A		ShoulderModel_rTSA/TOOLBOX_Muscle_Geometry/MUSCLE_TOOL_menu_functions.m
A		ShoulderModel_rTSA/TOOLBOX_Muscle_Geometry/MUSCLE_TOOL_reset_angles.m
A		ShoulderModel_rTSA/TOOLBOX_Muscle_Geometry/MUSCLE_TOOL_script_generator.m
A		ShoulderModel_rTSA/TOOLBOX_Muscle_Geometry/MUSCLE_TOOL_slider_modification.m
A		ShoulderModel_rTSA/TOOLBOX_Muscle_Geometry/MUSCLE_TOOL_sphere_rotation_matrix.m
A		ShoulderModel_rTSA/TOOLBOX_Muscle_Geometry/MUSCLE_TOOL_sphere_wrap.m
A		ShoulderModel_rTSA/TOOLBOX_Muscle_Geometry/MUSCLE_TOOL_spline_build.m
A		ShoulderModel_rTSA/TOOLBOX_Muscle_Geometry/MUSCLE_TOOL_stub_wrap.m
A		ShoulderModel_rTSA/TOOLBOX_Muscle_Geometry/MUSCLE_TOOL_update_visualisation.m
A	(dir)	ShoulderModel_rTSA/TOOLBOX_Ribcage_Ellipsoid/
A		ShoulderModel_rTSA/TOOLBOX_Ribcage_Ellipsoid/ELLIPSOID_TOOL_main_file.m
A		ShoulderModel_rTSA/TOOLBOX_Ribcage_Ellipsoid/ELLIPSOID_TOOL_optimisation_function.m
A		ShoulderModel_rTSA/TOOLBOX_Ribcage_Ellipsoid/ELLIPSOID_TOOL_optimisation_setup.m
A		ShoulderModel_rTSA/TOOLBOX_Ribcage_Ellipsoid/ELLIPSOID_TOOL_ribcage_selection_update.m
A		ShoulderModel_rTSA/TOOLBOX_Ribcage_Ellipsoid/ELLIPSOID_TOOL_run_optimisation.m
A		ShoulderModel_rTSA/TOOLBOX_Ribcage_Ellipsoid/ELLIPSOID_TOOL_script_generator.m
A		ShoulderModel_rTSA/TOOLBOX_Ribcage_Ellipsoid/ELLIPSOID_TOOL_update_visualisation.m
A	(dir)	ShoulderModel_rTSA/TOOLBOX_Subject_Specific/
A		ShoulderModel_rTSA/TOOLBOX_Subject_Specific/._SUBJECT_TOOL_Update_Glenoid_Orientation.m
A		ShoulderModel_rTSA/TOOLBOX_Subject_Specific/SUBJECT_TOOL_Clear_WireFrame.m
A		ShoulderModel_rTSA/TOOLBOX_Subject_Specific/SUBJECT_TOOL_Load_Kinematics.m
A		ShoulderModel_rTSA/TOOLBOX_Subject_Specific/SUBJECT_TOOL_Overwirte_Scaling.m
A		ShoulderModel_rTSA/TOOLBOX_Subject_Specific/SUBJECT_TOOL_Scale_Measurements.m
A		ShoulderModel_rTSA/TOOLBOX_Subject_Specific/SUBJECT_TOOL_Show_Glenoid_Orientation.m
A		ShoulderModel_rTSA/TOOLBOX_Subject_Specific/SUBJECT_TOOL_Show_PCSA.m
A		ShoulderModel_rTSA/TOOLBOX_Subject_Specific/SUBJECT_TOOL_Update_Glenoid_Orientation.m
A		ShoulderModel_rTSA/TOOLBOX_Subject_Specific/SUBJECT_TOOL_Update_Glenoid_Orientation.m~
A		ShoulderModel_rTSA/TOOLBOX_Subject_Specific/SUBJECT_TOOL_Update_PCSA.m
A		ShoulderModel_rTSA/TOOLBOX_Subject_Specific/SUBJECT_TOOL_Update_Weight.m
A		ShoulderModel_rTSA/TOOLBOX_Subject_Specific/SUBJECT_TOOL_Visualization.m
A		ShoulderModel_rTSA/TOOLBOX_Subject_Specific/SUBJECT_TOOL_build_data_bony_landmark.m
A		ShoulderModel_rTSA/TOOLBOX_Subject_Specific/SUBJECT_TOOL_build_data_bony_landmark.m~
A		ShoulderModel_rTSA/TOOLBOX_Subject_Specific/SUBJECT_TOOL_build_data_dynamics.m
A		ShoulderModel_rTSA/TOOLBOX_Subject_Specific/SUBJECT_TOOL_build_data_muscle_wrapping.m
A		ShoulderModel_rTSA/TOOLBOX_Subject_Specific/SUBJECT_TOOL_build_data_ribcage_ellipsoid.m
A		ShoulderModel_rTSA/TOOLBOX_Subject_Specific/SUBJECT_TOOL_main_file.m
A		ShoulderModel_rTSA/TOOLBOX_Subject_Specific/SUBJECT_TOOL_main_file.m~
A		ShoulderModel_rTSA/TOOLBOX_Subject_Specific/SUBJECT_TOOL_optimisation_function.m
A		ShoulderModel_rTSA/TOOLBOX_Subject_Specific/SUBJECT_TOOL_optimisation_setup.m
A		ShoulderModel_rTSA/TOOLBOX_Subject_Specific/SUBJECT_TOOL_ribcage_selection_update.m
A		ShoulderModel_rTSA/TOOLBOX_Subject_Specific/SUBJECT_TOOL_run_optimisation.m
A		ShoulderModel_rTSA/TOOLBOX_Subject_Specific/SUBJECT_TOOL_script_generator.m
A		ShoulderModel_rTSA/TOOLBOX_Subject_Specific/SUBJECT_TOOL_script_generator.m~
A		ShoulderModel_rTSA/TOOLBOX_Subject_Specific/SUBJECT_TOOL_update_visualisation.m
A	(dir)	ShoulderModel_rTSA/Visualisation_Functions/
A		ShoulderModel_rTSA/Visualisation_Functions/VISUALISATION_view_bone_meshing.m
A		ShoulderModel_rTSA/Visualisation_Functions/VISUALISATION_view_bone_wireframe.m
A		ShoulderModel_rTSA/Visualisation_Functions/VISUALISATION_view_joint_sinus_cones.m
A		ShoulderModel_rTSA/Visualisation_Functions/VISUALISATION_view_muscle_insertions.m
A		ShoulderModel_rTSA/Visualisation_Functions/VISUALISATION_view_muscle_origins.m
A		ShoulderModel_rTSA/Visualisation_Functions/VISUALISATION_view_muscle_segement.m
A		ShoulderModel_rTSA/Visualisation_Functions/VISUALISATION_view_muscle_wrapping_object.m
A		ShoulderModel_rTSA/Visualisation_Functions/VISUALISATION_view_ribcage_ellipsoid.m
A		ShoulderModel_rTSA/Visualisation_Functions/checking_the_landmarks.m
A	(dir)	ShoulderModel_rTSA/Visualisation_Original_Meshings/
A		ShoulderModel_rTSA/Visualisation_Original_Meshings/.DS_Store
A		ShoulderModel_rTSA/Visualisation_Original_Meshings/Clavicula_Mesh0.mat
A		ShoulderModel_rTSA/Visualisation_Original_Meshings/Clavicula_Mesh_2.mat
A		ShoulderModel_rTSA/Visualisation_Original_Meshings/Clavicula_Meshold.mat
A		ShoulderModel_rTSA/Visualisation_Original_Meshings/Hand_Mesh_Try1.mat
A		ShoulderModel_rTSA/Visualisation_Original_Meshings/Hand_Mesh_Try2.mat
A		ShoulderModel_rTSA/Visualisation_Original_Meshings/Humerus_Mesh0.mat
A		ShoulderModel_rTSA/Visualisation_Original_Meshings/Humerus_Mesh_H1.mat
A		ShoulderModel_rTSA/Visualisation_Original_Meshings/MAIN_INITIALISATION_build_data_bony_landmarkOld.m
A		ShoulderModel_rTSA/Visualisation_Original_Meshings/MAIN_INITIALISATION_build_data_bony_landmark_vis.m
A		ShoulderModel_rTSA/Visualisation_Original_Meshings/MESHING_check_mesh.m
A		ShoulderModel_rTSA/Visualisation_Original_Meshings/MESHING_check_mesh_hand.m
A		ShoulderModel_rTSA/Visualisation_Original_Meshings/MESHING_generate_mesh.m
A		ShoulderModel_rTSA/Visualisation_Original_Meshings/Radius_Mesh0.mat
A		ShoulderModel_rTSA/Visualisation_Original_Meshings/Radius_Mesh_Try1.mat
A		ShoulderModel_rTSA/Visualisation_Original_Meshings/Radius_Mesh_Try3.mat
A		ShoulderModel_rTSA/Visualisation_Original_Meshings/Radius_Mesh_Try31.mat
A		ShoulderModel_rTSA/Visualisation_Original_Meshings/Radius_Mesh_Try32.mat
A		ShoulderModel_rTSA/Visualisation_Original_Meshings/Radius_Mesh_Try3_old.mat
A		ShoulderModel_rTSA/Visualisation_Original_Meshings/Scapula_Mesh0.mat
A		ShoulderModel_rTSA/Visualisation_Original_Meshings/Thorax_Mesh0.mat
A		ShoulderModel_rTSA/Visualisation_Original_Meshings/Ulna_Mesh0.mat
A		ShoulderModel_rTSA/Visualisation_Original_Meshings/Ulna_Mesh_Try1.mat
A		ShoulderModel_rTSA/Visualisation_Original_Meshings/Ulna_Mesh_Try3.mat
A		ShoulderModel_rTSA/Visualisation_Original_Meshings/Ulna_Mesh_Try31.mat
A		ShoulderModel_rTSA/Visualisation_Original_Meshings/Ulna_Mesh_Try32.mat
A		ShoulderModel_rTSA/Visualisation_Original_Meshings/Ulna_Mesh_Try3_old.mat
A	(dir)	ShoulderModel_rTSA/scapula_coordinate_system/
A		ShoulderModel_rTSA/scapula_coordinate_system/MAIN_INITIALISATION_build_data_bony_landmark.m
A		ShoulderModel_rTSA/scapula_coordinate_system/MAIN_TOOL_geometry_functions.m
A		ShoulderModel_rTSA/scapula_coordinate_system/PlotPoint.m
A		ShoulderModel_rTSA/scapula_coordinate_system/Scapula_Mesh0.mat
A		ShoulderModel_rTSA/scapula_coordinate_system/finding_the_right_GH_for_generic_model.fig
A		ShoulderModel_rTSA/scapula_coordinate_system/fitLine.m
A		ShoulderModel_rTSA/scapula_coordinate_system/scapula_coordinate_sytsem.m
A		ShoulderModel_rTSA/scapula_coordinate_system/try1_new_GH.fig
A		ShoulderModel_rTSA/transforming_mesh_points.m
A		ShoulderModel_rTSA/transforming_mesh_points.m~