Diffusion BIOP Run Macro 67311d1c35ce

Fixes POM and the old presence of the coloc Plugin
67311d1c35ce
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Authored by oburri on Mar 8 2018, 18:15.

Description

Fixes POM and the old presence of the coloc Plugin

Details

Committed

oburri

Mar 8 2018, 18:15

Pushed

oburri

Mar 8 2018, 18:16

Parents

R6269:d74451a57a9f: Make the random noise images deterministic

Branches

Unknown

Tags

Unknown

References

HEAD -> master

Event Timeline

oburri committed R6269:67311d1c35ce: Fixes POM and the old presence of the coloc Plugin (authored by oburri).Mar 8 2018, 18:15

Changes (105)

		Path
D		README.md
M		pom.xml
A	(dir)	src/main/java/ch/
A	(dir)	src/main/java/ch/epfl/
A	(dir)	src/main/java/ch/epfl/biop/
A	(dir)	src/main/java/ch/epfl/biop/macrorunner/
A		src/main/java/ch/epfl/biop/macrorunner/B_Run_Macro.java
D		src/main/java/net
D		src/main/java/net/imglib2
D		src/main/java/net/imglib2/PairIterator.java
D		src/main/java/net/imglib2/PredicateCursor.java
D		src/main/java/net/imglib2/TwinCursor.java
D		src/main/java/net/imglib2/algorithm
D		src/main/java/net/imglib2/algorithm/math
D		src/main/java/net/imglib2/algorithm/math/ImageStatistics.java
D		src/main/java/net/imglib2/predicate
D		src/main/java/net/imglib2/predicate/MaskPredicate.java
D		src/main/java/net/imglib2/predicate/Predicate.java
D		src/main/java/sc
D		src/main/java/sc/fiji
D		src/main/java/sc/fiji/coloc
D		src/main/java/sc/fiji/coloc/ColocImgLibGadgets.java
D		src/main/java/sc/fiji/coloc/Coloc_2.java
D		src/main/java/sc/fiji/coloc/Colocalisation_Test.java
D		src/main/java/sc/fiji/coloc/Colocalisation_Threshold.java
D		src/main/java/sc/fiji/coloc/algorithms
D		src/main/java/sc/fiji/coloc/algorithms/Accumulator.java
D		src/main/java/sc/fiji/coloc/algorithms/Algorithm.java
D		src/main/java/sc/fiji/coloc/algorithms/AutoThresholdRegression.java
D		src/main/java/sc/fiji/coloc/algorithms/BisectionStepper.java
D		src/main/java/sc/fiji/coloc/algorithms/ChannelMapper.java
D		src/main/java/sc/fiji/coloc/algorithms/CostesSignificanceTest.java
D		src/main/java/sc/fiji/coloc/algorithms/Histogram2D.java
D		src/main/java/sc/fiji/coloc/algorithms/InputCheck.java
D		src/main/java/sc/fiji/coloc/algorithms/IntArraySorter.java
D		src/main/java/sc/fiji/coloc/algorithms/IntComparator.java
D		src/main/java/sc/fiji/coloc/algorithms/KendallTauRankCorrelation.java
D		src/main/java/sc/fiji/coloc/algorithms/LiHistogram2D.java
D		src/main/java/sc/fiji/coloc/algorithms/LiICQ.java
D		src/main/java/sc/fiji/coloc/algorithms/MandersColocalization.java
D		src/main/java/sc/fiji/coloc/algorithms/MissingPreconditionException.java
D		src/main/java/sc/fiji/coloc/algorithms/PearsonsCorrelation.java
D		src/main/java/sc/fiji/coloc/algorithms/SimpleStepper.java
D		src/main/java/sc/fiji/coloc/algorithms/SpearmanRankCorrelation.java
D		src/main/java/sc/fiji/coloc/algorithms/Stepper.java
D		src/main/java/sc/fiji/coloc/gadgets
D		src/main/java/sc/fiji/coloc/gadgets/DataContainer.java
D		src/main/java/sc/fiji/coloc/gadgets/MaskFactory.java
D		src/main/java/sc/fiji/coloc/gadgets/Statistics.java
D		src/main/java/sc/fiji/coloc/gadgets/ThresholdMode.java
D		src/main/java/sc/fiji/coloc/results
D		src/main/java/sc/fiji/coloc/results/AnalysisResults.java
D		src/main/java/sc/fiji/coloc/results/EasyDisplay.java
D		src/main/java/sc/fiji/coloc/results/NamedContainer.java
D		src/main/java/sc/fiji/coloc/results/PDFWriter.java
D		src/main/java/sc/fiji/coloc/results/ResultHandler.java
D		src/main/java/sc/fiji/coloc/results/SingleWindowDisplay.java
D		src/main/java/sc/fiji/coloc/results/ValueResult.java
D		src/main/java/sc/fiji/coloc/results/Warning.java
M		src/main/resources/plugins.config
D		src/main/resources/script_templates
D		src/main/resources/script_templates/Examples
D		src/main/resources/script_templates/Examples/Colocalisation.groovy
D		src/test
D		src/test/java
D		src/test/java/sc
D		src/test/java/sc/fiji
D		src/test/java/sc/fiji/coloc
D		src/test/java/sc/fiji/coloc/Main.java
D		src/test/java/sc/fiji/coloc/tests
D		src/test/java/sc/fiji/coloc/tests/AutoThresholdRegressionTest.java
D		src/test/java/sc/fiji/coloc/tests/ColocalisationTest.java
D		src/test/java/sc/fiji/coloc/tests/CommutativityTest.java
D		src/test/java/sc/fiji/coloc/tests/CostesSignificanceTest.java
D		src/test/java/sc/fiji/coloc/tests/ImprovedNoise.java
D		src/test/java/sc/fiji/coloc/tests/KendallTauTest.java
D		src/test/java/sc/fiji/coloc/tests/LiICQTest.java
D		src/test/java/sc/fiji/coloc/tests/MandersColocalizationTest.java
D		src/test/java/sc/fiji/coloc/tests/MaskAndRoiTest.java
D		src/test/java/sc/fiji/coloc/tests/PearsonsCorrelationTest.java
D		src/test/java/sc/fiji/coloc/tests/SpearmanRankTest.java
D		src/test/java/sc/fiji/coloc/tests/StatisticsTest.java
D		src/test/java/sc/fiji/coloc/tests/TestImageAccessor.java
D		src/test/java/sc/fiji/coloc/tests/TestInteractively.java
D		src/test/resources
D		src/test/resources/SineXCosY.ijm
D		src/test/resources/colocsample1b-green.tif
D		src/test/resources/colocsample1b-mask.tif
D		src/test/resources/colocsample1b-red.tif
D		src/test/resources/greenZstack.tif
D		src/test/resources/high_random_overlap1.tif
D		src/test/resources/high_random_overlap2.tif
D		src/test/resources/mandersA.tiff
D		src/test/resources/mandersB.tiff
D		src/test/resources/mandersC.tiff
D		src/test/resources/mandersD.tiff
D		src/test/resources/mandersE.tiff
D		src/test/resources/mandersF.tiff
D		src/test/resources/mandersG.tiff
D		src/test/resources/mandersH.tiff
D		src/test/resources/mandersI.tiff
D		src/test/resources/random-dots-smoothed.ijm
D		src/test/resources/redZstack.tif
D		src/test/resources/syntheticNegCh1.tif
D		src/test/resources/syntheticNegCh2.tif