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oburri (Olivier Burri)
BioImage Analyst

Projects

Repositories (21)
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User Details

User Since
Aug 8 2016, 11:14 (127 w, 5 d)
Availability
Available
Organization
epfl.ch

Recent Activity
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Fri, Jan 18

oburri edited the content of QuPath Bugs & Errors.
Fri, Jan 18, 11:01
oburri created QuPath Bugs & Errors.
Fri, Jan 18, 10:40
oburri deleted QuPath Information.
Fri, Jan 18, 10:17

Mon, Jan 14

oburri edited the content of QuPath.
Mon, Jan 14, 10:14
oburri edited the content of QuPath.
Mon, Jan 14, 10:14
oburri published a new version of QuPath.
Mon, Jan 14, 10:12

Fri, Dec 21

oburri committed R944:a8a781a0c5bd: fixes format issues and adds sanity check if roiset is present but not VSI file (authored by oburri).
fixes format issues and adds sanity check if roiset is present but not VSI file
Fri, Dec 21, 16:38

Dec 19 2018

oburri edited the content of QuPath.
Dec 19 2018, 15:35

Dec 13 2018

oburri committed rBIOPCHTOOLS02a6d53a894e: fixes display mode for LUT setting (authored by oburri).
fixes display mode for LUT setting
Dec 13 2018, 17:37
oburri committed rOPERETTAIMPORTb649463b3b99: changes condition to check for anything other than a shortprocessor (authored by oburri).
changes condition to check for anything other than a shortprocessor
Dec 13 2018, 09:52
oburri committed rOPERETTAIMPORT1aba15bcb7f4: adds rescaling factor for 32-bit images and distinguishes 8 bit images too if… (authored by oburri).
adds rescaling factor for 32-bit images and distinguishes 8 bit images too if…
Dec 13 2018, 09:52

Dec 12 2018

oburri committed rBIOPCHTOOLS5a0cd121baf3: corrects a bug where LUT anc BC were using Composite mode for the images (authored by oburri).
corrects a bug where LUT anc BC were using Composite mode for the images
Dec 12 2018, 12:44

Dec 10 2018

oburri edited the content of Fluorescent Probes in Perspective .
Dec 10 2018, 15:54

Dec 5 2018

oburri committed rBIOPCHTOOLS0872e128a9a3: fixes compositing to LUT selection and application (authored by oburri).
fixes compositing to LUT selection and application
Dec 5 2018, 13:58

Dec 4 2018

oburri committed rBIOPCHTOOLS94d6c82be46a: fixes issue where images could be multichannel and not composite (authored by oburri).
fixes issue where images could be multichannel and not composite
Dec 4 2018, 12:50

Dec 3 2018

oburri changed the visibility for Tilling.
Dec 3 2018, 10:57
oburri changed the visibility for Resolution & Pixel Size.
Dec 3 2018, 10:57
oburri changed the visibility for III-Graphs & Statistics.
Dec 3 2018, 10:57
oburri renamed III-Graphs & Statistics from III-Graphs to III-Graphs & Statistics.
Dec 3 2018, 10:57
oburri edited the content of II-c Threshold.
Dec 3 2018, 10:46
oburri edited the content of II-b FWHM - Measure Lengths Scripts.
Dec 3 2018, 10:45
oburri renamed II-b FWHM - Measure Lengths Scripts from II-b FWHM - Measure Lengths to II-b FWHM - Measure Lengths Scripts.
Dec 3 2018, 10:44
oburri changed the visibility for II-a-2 Measure DAB intensity.
Dec 3 2018, 10:43
oburri changed the visibility for II-a-1 Measure Intensity.
Dec 3 2018, 10:43
oburri changed the visibility for I- Why do we automatize analysis ? .
Dec 3 2018, 10:43
oburri changed the visibility for Good Practices.
Dec 3 2018, 10:43
oburri changed the visibility for Field Illumination.
Dec 3 2018, 10:42
oburri edited the content of Teaching.
Dec 3 2018, 10:42
oburri edited the content of Teaching.
Dec 3 2018, 10:41
oburri changed the visibility for Teaching.
Dec 3 2018, 10:35

Nov 28 2018

oburri committed rOPERETTAIMPORT18f859b91010: fixes the autogenerated name of the getzProjectionMethod (authored by oburri).
fixes the autogenerated name of the getzProjectionMethod
Nov 28 2018, 18:39
oburri edited the content of QuPath Information.
Nov 28 2018, 18:38
oburri created Processing & Analysis Scripts for QuPath.
Nov 28 2018, 18:36
oburri renamed QuPath Information from Qupath-new to QuPath Information.
Nov 28 2018, 18:34
oburri created QuPath Information.
Nov 28 2018, 12:52

Nov 8 2018

oburri edited the content of CUDA Deconvolution.
Nov 8 2018, 11:30 · Restricted Project
oburri edited the content of CUDA Deconvolution.
Nov 8 2018, 11:29 · Restricted Project

Oct 19 2018

oburri committed R7624:aaeb05530bda: tries to speed up unmixing avoiding using Jama (authored by oburri).
tries to speed up unmixing avoiding using Jama
Oct 19 2018, 15:38
oburri committed R7624:66435266b508: fixes a logical error where channel and fluorophore were inverted! (authored by oburri).
fixes a logical error where channel and fluorophore were inverted!
Oct 19 2018, 15:38

Oct 15 2018

oburri committed R7624:317054fab80a: adds display range correction (authored by oburri).
adds display range correction
Oct 15 2018, 10:42
oburri committed R7624:c40ec982deb7: First commit (authored by oburri).
First commit
Oct 15 2018, 10:42

Oct 12 2018

oburri committed rOPERETTAIMPORTf9174dc58614: adds the possibility to select fubfields (authored by oburri).
adds the possibility to select fubfields
Oct 12 2018, 09:58
oburri committed rOPERETTAIMPORTcca6dc6e3c35: fixes typos (authored by oburri).
fixes typos
Oct 12 2018, 09:58
oburri edited the content of ijs-Perkin Elmer Operetta CLS, Stitching And Export.
Oct 12 2018, 09:37 · Restricted Project
oburri renamed ijs-Perkin Elmer Operetta CLS, Stitching And Export from ijs-Perkin Elmer Opereta CLS, Stitching And Export to ijs-Perkin Elmer Operetta CLS, Stitching And Export.
Oct 12 2018, 09:27 · Restricted Project

Oct 2 2018

oburri edited the content of Bioimaging And Optics Platform.
Oct 2 2018, 09:14 · Restricted Project

Sep 28 2018

oburri edited the content of ijs-Perkin Elmer Operetta CLS, Stitching And Export.
Sep 28 2018, 15:14 · Restricted Project
oburri committed rOPERETTAIMPORTda4fd844d72c: adds new way to handle exporting selected channels and timepoints (authored by oburri).
adds new way to handle exporting selected channels and timepoints
Sep 28 2018, 12:25
oburri committed rOPERETTAIMPORT71eae4c6a082: combines updates to cope with variables erroneously defined as Long (authored by oburri).
combines updates to cope with variables erroneously defined as Long
Sep 28 2018, 09:51

Sep 25 2018

oburri edited the content of QuPath Scripts.
Sep 25 2018, 13:22
oburri edited the content of QuPath Scripts.
Sep 25 2018, 13:21

Sep 11 2018

oburri renamed Code Licensing from Licensing to Code Licensing.
Sep 11 2018, 16:39

Sep 4 2018

oburri committed R944:47939348bf10: adds internal setting to fix VSO Bioformats C<->Z bug (authored by oburri).
adds internal setting to fix VSO Bioformats C<->Z bug
Sep 4 2018, 11:19
oburri committed R944:b87564e7290d: Merge branch 'master' of https://c4science.ch/diffusion/944/ijab-vsi-reader (authored by oburri).
Merge branch 'master' of https://c4science.ch/diffusion/944/ijab-vsi-reader
Sep 4 2018, 11:19
oburri committed R944:908b6618ec40: New location (authored by oburri).
New location
Sep 4 2018, 11:19
oburri committed R944:39e90959e414: Adds documentation explaining recent fixes fixes a bug where ROI export no… (authored by oburri).
Adds documentation explaining recent fixes fixes a bug where ROI export no…
Sep 4 2018, 11:19

Aug 29 2018

oburri created BIOP Google Drive.
Aug 29 2018, 11:30
oburri edited the content of ijab-BIOP SIM/STORM Tools ActionBar.
Aug 29 2018, 09:57
oburri edited the content of ijab-BIOP SIM/STORM Tools ActionBar.
Aug 29 2018, 09:56

Aug 24 2018

oburri edited the content of CUDA Deconvolution.
Aug 24 2018, 11:12 · Restricted Project

Aug 16 2018

oburri committed R767:c1442a86c48f: Update following manuscript revision (authored by oburri).
Update following manuscript revision
Aug 16 2018, 15:05

Aug 14 2018

oburri edited the content of Computers & Servers at the BIOP.
Aug 14 2018, 09:30 · Restricted Project
oburri edited the content of Computers & Servers at the BIOP.
Aug 14 2018, 09:26 · Restricted Project

Aug 10 2018

oburri created Workshops.
Aug 10 2018, 13:28

Jul 27 2018

oburri created Code Licensing.
Jul 27 2018, 13:04

Jul 24 2018

oburri edited the content of QuPath Workshop April 2018.
Jul 24 2018, 09:52
oburri edited the content of QuPath Scripts.
Jul 24 2018, 09:51

Jul 13 2018

oburri committed rOPERETTAIMPORT568d79c7b3de: Fixes an error where images could be 32-bit (digital phase), so it converts… (authored by oburri).
Fixes an error where images could be 32-bit (digital phase), so it converts…
Jul 13 2018, 16:15

Jul 12 2018

oburri committed rOPERETTAIMPORTd3542f6c45c9: fixes an issue where if a channel is missing, the script would copy the next… (authored by oburri).
fixes an issue where if a channel is missing, the script would copy the next…
Jul 12 2018, 15:01

Jul 10 2018

oburri committed R988:b301098b455c: fixes a bug where a constant was incorrect. (authored by oburri).
fixes a bug where a constant was incorrect.
Jul 10 2018, 10:48

Jul 8 2018

oburri committed R988:353b144e59d7: adds bugfixes and pom version bump (authored by oburri).
adds bugfixes and pom version bump
Jul 8 2018, 15:50

Jun 12 2018

oburri edited the content of II-c Threshold.
Jun 12 2018, 11:17

May 7 2018

oburri edited the content of ijab-BIOP Channel Tools.
May 7 2018, 09:30 · Restricted Project
oburri edited the content of ijab-BIOP Channel Tools.
May 7 2018, 09:26 · Restricted Project

May 3 2018

oburri edited the content of QuPath.
May 3 2018, 10:39

Apr 23 2018

oburri edited the content of QuPath Scripts.
Apr 23 2018, 12:49
oburri edited the content of QuPath Questions & Answers.
Apr 23 2018, 12:48
oburri edited the content of QuPath Workshop April 2018.
Apr 23 2018, 12:42
oburri edited the content of QuPath Questions & Answers.
Apr 23 2018, 11:15
oburri edited the content of QuPath Questions & Answers.
Apr 23 2018, 11:12
oburri edited the content of QuPath Questions & Answers.
Apr 23 2018, 11:11
oburri edited the content of QuPath Scripts.
Apr 23 2018, 10:40
oburri edited the content of QuPath Scripts.
Apr 23 2018, 10:40
oburri edited the content of QuPath Workshop April 2018.
Apr 23 2018, 10:31
oburri edited the content of QuPath Questions & Answers.
Apr 23 2018, 10:30

Apr 22 2018

oburri edited the content of Scripting Reference.
Apr 22 2018, 18:22
oburri created Scripting Reference.
Apr 22 2018, 18:08
oburri edited the content of QuPath Workshop April 2018.
Apr 22 2018, 18:01
oburri edited the content of QuPath Workshop April 2018.
Apr 22 2018, 17:57
oburri updated subscribers of QuPath Scripts.
Apr 22 2018, 17:55
oburri edited the content of QuPath Workshop April 2018.
Apr 22 2018, 17:55
oburri created QuPath Scripts.
Apr 22 2018, 17:55
oburri created QuPath Questions & Answers.
Apr 22 2018, 17:53
oburri edited the content of QuPath Workshop April 2018.
Apr 22 2018, 17:47
oburri edited the content of QuPath Workshop April 2018.
Apr 22 2018, 17:40
oburri edited the content of QuPath Workshop April 2018.
Apr 22 2018, 17:25

Apr 20 2018

oburri edited the content of QuPath Workshop April 2018.
Apr 20 2018, 21:31
oburri edited the content of QuPath Workshop April 2018.
Apr 20 2018, 21:10
oburri edited the content of QuPath Workshop April 2018.
Apr 20 2018, 20:38
oburri created QuPath Workshop April 2018.
Apr 20 2018, 19:57
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