slurm-submit-script-WITH-containers.sh
1de174bfdd99master

slurm-submit-script-WITH-containers.sh
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			#!/bin/bash

			#SBATCH --job-name=pipeline2-containers
			#SBATCH --partition=sing
			#SBATCH --time=00:10:00
			#SBATCH --cpus-per-task=4
			#SBATCH --mem=10G
			#SBATCH --output=containers.log
			#SBATCH --mail-user=alexander.kashev@math.unibe.ch

			# define the number of cpus to use
			# you can use env vars provided by your scheduler or hardcode the number of cpus to use
			export NUM_CPUS=${SLURM_CPUS_PER_TASK}

			# Actual pipeline run+test
			./pipeline.py test