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History Graph
| Commit | Author | Details | Committed | ||||
|---|---|---|---|---|---|---|---|
| a0d2698cc758 | laurenczy | Added SIB publications example pipeline | Jun 30 2017 | ||||
| e956cc851379 | laurenczy | Created public branch with re-organised files | Jun 30 2017 | ||||
| 41139a0fa5b1 | laurenczy | Added config file for hello_world | Jun 23 2017 | ||||
| f5ec274b5772 | laurenczy | Tested runner script, made a python3 version | Jun 23 2017 | ||||
| 2dda3e0d84ca | kashev | Merge branch 'master' of ssh://c4science.ch/diffusion/2915/esct-pipeline… | Jun 22 2017 | ||||
| 6f09d9c943be | kashev | First version of pipeline runner script. Still WIP but functional, with… | Jun 22 2017 | ||||
| 87ebc08e65e2 | laurenczy | Added own version of docker2singularity to try to reduce size of converted image | Jun 22 2017 | ||||
| 917c7dbef8a7 | laurenczy | Added tests for hello world light | Jun 22 2017 | ||||
| 5312e3ee74a5 | laurenczy | Changing LSF submission scripts for pipeline1 (more memory) | Jun 14 2017 | ||||
| dc47940dd1f2 | laurenczy | Changing LSF submission scripts for pipeline1 (more memory) | Jun 14 2017 | ||||
| 05ccf8c0695c | laurenczy | Changing LSF submission scripts for pipeline1 | Jun 14 2017 | ||||
| a26dfaf7ef80 | laurenczy | Changing LSF submission scripts | Jun 13 2017 | ||||
| ba52ee6fa89f | laurenczy | Changing LSF submission scripts | Jun 13 2017 | ||||
| c7b9f3ad048f | laurenczy | Added bowtie2 installation to pipeline2 Dockerfile | Jun 13 2017 | ||||
| f45978fdd4bb | laurenczy | Testing pipelines with singularity pull | Jun 13 2017 | ||||
| 630423d182f8 | laurenczy | Testing private GitLab (1) | Jun 12 2017 | ||||
| 03a5875e56d2 | • sduvaud | First pipeline. Not tested | Jun 9 2017 | ||||
| 21e422a4ed5e | • sduvaud | Adapting Pablo's pipeline #2 to Vital-it | Jun 9 2017 | ||||
| cb2b6168f33f | Pablo Escobar | define the singularity container as a variable | Jun 8 2017 | ||||
| 10da60ad112f | Pablo Escobar | some style fixes in the submit scripts | Jun 8 2017 | ||||
| dc1a57f4a561 | Pablo Escobar | use modules to load Singularity | Jun 8 2017 | ||||
| bc74245c0363 | laurenczy | Added Dockerfile for pipeline2 and some scripts, started pipeline1 snakemake… | Jun 1 2017 | ||||
| 21ff5170b17d | laurenczy | Updated the hello world pipeline. Provided download link for the Singularity… | May 30 2017 | ||||
| 14c3d834a9d5 | laurenczy | BugFix for pipeline1 | May 30 2017 | ||||
| a137d06ae1a0 | laurenczy | Changing parameters for pipeline1 | May 30 2017 | ||||
| 4e03d975d3e8 | laurenczy | Changing parameters for pipeline1 | May 30 2017 | ||||
| 05611b7b8bbd | laurenczy | Changing parameters for pipeline1 | May 30 2017 | ||||
| 623b95a9f0cf | laurenczy | Changing parameters for pipeline1 | May 30 2017 | ||||
| 645b3e1d6f40 | laurenczy | Adapted submission script to LSF (running on Euler) for pipeline2 | May 29 2017 | ||||
| 5f9551340c48 | laurenczy | Adapted submission script to LSF (running on Euler) | May 29 2017 | ||||
| b6c0776b9425 | laurenczy | Changing folder structure | May 29 2017 | ||||
| 48986a51e8d8 | Pablo Escobar | updated README files with the right download urls | May 24 2017 | ||||
| abd314c44cfa | Pablo Escobar | added vcftools to the singularity bootstrap file | May 24 2017 | ||||
| ba029b9382ca | Pablo Escobar | renamed output log | May 22 2017 | ||||
| 6116ad61478a | Pablo Escobar | added bootstrap file and submit script using containers for pipeline2 | May 22 2017 | ||||
| 5b9e8cc39cdc | Pablo Escobar | added submit scripts without containers for pipeline2 | May 19 2017 | ||||
| f7b55cb712f3 | Pablo Escobar | udpate README with the url to download the singularity container | May 19 2017 | ||||
| d35eeca0493d | Pablo Escobar | renamed README file | May 19 2017 | ||||
| 1c1d706558d8 | Pablo Escobar | added submit script using singularity containers | May 19 2017 | ||||
| 0c09cee61b87 | Pablo Escobar | update submit script without containers to use a different output dir | May 19 2017 | ||||
| b06c9dfdf23c | Pablo Escobar | first commit for pipeline1 | May 19 2017 | ||||
| b590df206853 | laurenczy | Small fixes | May 2 2017 | ||||
| f9d26fef981b | laurenczy | Testing scicore pipeline... | Apr 28 2017 | ||||
| 65c2a27f3f55 | laurenczy | Updating pipelines, work in progress... | Apr 28 2017 | ||||
| bb36f5cef5b2 | laurenczy | Renaming pipelines, adding tests for sciCORE's pipeline | Apr 28 2017 | ||||
| 42362601403b | laurenczy | Added first version of the basic 'hello world' pipeline | Apr 21 2017 | ||||
| 86f5e6f22b31 | laurenczy | Added SIS folder | Mar 24 2017 | ||||
| 7e568b720017 | laurenczy | initial commit | Mar 24 2017 |
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