Diffusion eSCT pipeline interoperability (master) History

R2915/SIS
master5f87b95ca8ed8a5091a1a91…

Aug 22 2017

Merge branch 'master' of https://c4science.ch/diffusion/2915/esct-pipeline…
5f87b95ca8ed
·laurenczy on Aug 22 2017, 17:05.
Added Singularity build scritp
fc109dd6439d
·laurenczy on Aug 22 2017, 17:03.
Added LSF submission scripts
4b2d7443f497
·laurenczy on Aug 22 2017, 17:02.
Fixed version number
1bd341d02d96
·laurenczy on Aug 22 2017, 16:00.
Fixed version number
06e90b3f25ec
·laurenczy on Aug 22 2017, 15:58.
Added pushing script
96b5a036c592
·laurenczy on Aug 22 2017, 15:20.
Fixed Dockerfile for LD_LIBRARY_PATH and PATH variables
5ab0f7969cb5
·laurenczy on Aug 22 2017, 15:10.
Added docker images building script
974c8ef4235c
·laurenczy on Aug 22 2017, 15:08.
Deleting logs from repo
98bb54e0f689
·laurenczy on Aug 22 2017, 15:04.
Ordering files, renaming, adding comments
c32b5b9f3aa0
·laurenczy on Aug 22 2017, 15:01.

Aug 14 2017

Added Dockerfile and YAML file
06a1296c950b
·laurenczy on Aug 14 2017, 16:25.
Added MPI folder
286888735b82
·laurenczy on Aug 14 2017, 15:56.

Jun 23 2017

Added config file for hello_world
41139a0fa5b1
·laurenczy on Jun 23 2017, 16:56.
Tested runner script, made a python3 version
f5ec274b5772
·laurenczy on Jun 23 2017, 16:22.

Jun 22 2017

Added own version of docker2singularity to try to reduce size of converted image
87ebc08e65e2
·laurenczy on Jun 22 2017, 16:12.
Added tests for hello world light
917c7dbef8a7
·laurenczy on Jun 22 2017, 16:11.

Jun 14 2017

Changing LSF submission scripts for pipeline1 (more memory)
5312e3ee74a5
·laurenczy on Jun 14 2017, 14:47.
Changing LSF submission scripts for pipeline1 (more memory)
dc47940dd1f2
·laurenczy on Jun 14 2017, 12:43.
Changing LSF submission scripts for pipeline1
05ccf8c0695c
·laurenczy on Jun 14 2017, 10:18.

Jun 13 2017

Changing LSF submission scripts
a26dfaf7ef80
·laurenczy on Jun 13 2017, 17:19.
Changing LSF submission scripts
ba52ee6fa89f
·laurenczy on Jun 13 2017, 16:35.
Added bowtie2 installation to pipeline2 Dockerfile
c7b9f3ad048f
·laurenczy on Jun 13 2017, 16:31.
Testing pipelines with singularity pull
f45978fdd4bb
·laurenczy on Jun 13 2017, 16:19.

Jun 12 2017

Testing private GitLab (1)
630423d182f8
·laurenczy on Jun 12 2017, 11:10.

Jun 1 2017

Added Dockerfile for pipeline2 and some scripts, started pipeline1 snakemake…
bc74245c0363
·laurenczy on Jun 1 2017, 14:09.

May 30 2017

Updated the hello world pipeline. Provided download link for the Singularity…
21ff5170b17d
·laurenczy on May 30 2017, 14:57.
BugFix for pipeline1
14c3d834a9d5
·laurenczy on May 30 2017, 10:46.
Changing parameters for pipeline1
a137d06ae1a0
·laurenczy on May 30 2017, 10:31.
Changing parameters for pipeline1
4e03d975d3e8
·laurenczy on May 30 2017, 10:28.
Changing parameters for pipeline1
05611b7b8bbd
·laurenczy on May 30 2017, 10:24.
Changing parameters for pipeline1
623b95a9f0cf
·laurenczy on May 30 2017, 10:24.

May 29 2017

Adapted submission script to LSF (running on Euler) for pipeline2
645b3e1d6f40
·laurenczy on May 29 2017, 17:00.
Adapted submission script to LSF (running on Euler)
5f9551340c48
·laurenczy on May 29 2017, 16:45.
Changing folder structure
b6c0776b9425
·laurenczy on May 29 2017, 16:33.

May 2 2017

Small fixes
b590df206853
·laurenczy on May 2 2017, 08:41.

Apr 28 2017

Testing scicore pipeline...
f9d26fef981b
·laurenczy on Apr 28 2017, 18:07.
Updating pipelines, work in progress...
65c2a27f3f55
·laurenczy on Apr 28 2017, 17:03.
Renaming pipelines, adding tests for sciCORE's pipeline
bb36f5cef5b2
·laurenczy on Apr 28 2017, 16:55.

Apr 21 2017

Added first version of the basic 'hello world' pipeline
42362601403b
·laurenczy on Apr 21 2017, 15:42.

Mar 24 2017

Added SIS folder
86f5e6f22b31
·laurenczy on Mar 24 2017, 13:30.