Page Menu
Home
c4science
Search
Configure Global Search
Log In
Files
F86739061
pipeline5.run
No One
Temporary
Actions
Download File
Edit File
Delete File
View Transforms
Subscribe
Mute Notifications
Award Token
Subscribers
None
File Metadata
Details
File Info
Storage
Attached
Created
Tue, Oct 8, 08:14
Size
821 B
Mime Type
text/x-shellscript
Expires
Thu, Oct 10, 08:14 (1 d, 23 h)
Engine
blob
Format
Raw Data
Handle
21476450
Attached To
R6289 Motion correction paper
pipeline5.run
View Options
#!/bin/bash
#SBATCH -p debug
#SBATCH --workdir /home/aymanns/motion-correction-paper
#SBATCH --nodes 1
#SBATCH --ntasks 1
#SBATCH --cpus-per-task 1
#SBATCH --mem 128000
#SBATCH --time 01:00:00
module load matlab
module load jdk
module load gcc
module load openblas/0.2.19-openmp
echo STARTING at `date`
/home/aymanns/Fiji.app/ImageJ-linux64 --ij2 --headless --console --run /home/aymanns/motion-correction-paper/preprocessing.py 'parameter_file="4_170609_fly1_005.json"'
echo FINISHED preprocessing at `date`
matlab -nodesktop -nodisplay -r "test('4_170609_fly1_005.json')"
echo FINISHED Matlab at `date`
/home/aymanns/Fiji.app/ImageJ-linux64 --ij2 --headless --console --run /home/aymanns/motion-correction-paper/fiji_script_vertical_combination.py 'parameter_file="4_170609_fly1_005.json"'
echo FINISHED Fiji at `date`
Event Timeline
Log In to Comment