Diffusion Motion correction paper (translation_to_python)
Recent Commits
Recent Commits
| Commit | Author | Details | Committed | ||||
|---|---|---|---|---|---|---|---|
| a19ef641815e | aymanns | for the moment last commit for translation to python | Apr 16 2018 | ||||
| ff9f520a76c9 | aymanns | use matlab parts in of_l1_l2_fm_admm | Mar 16 2018 | ||||
| dcd42431cf9c | aymanns | unfinished of_l1_l2_fm_admm for back up | Mar 15 2018 | ||||
| d62aeef00601 | aymanns | interim stage | Mar 15 2018 | ||||
| b75cd616d36b | aymanns | update | Mar 14 2018 | ||||
| 963da7cee39e | aymanns | changed lambda to lmbd | Mar 14 2018 | ||||
| 4534f6e606c9 | aymanns | removed *.o | Mar 14 2018 | ||||
| aff999b03db5 | aymanns | made code a submodule | Mar 14 2018 | ||||
| 3b07d0e78f1e | aymanns | made motioncorrection a module | Mar 14 2018 | ||||
| 02ed260bf80d | aymanns | partial translation into python | Mar 14 2018 | ||||
| 3ec79a83cd4d | aymanns | initial matlab code from Denis Fortun | Mar 12 2018 |
README.rtf
README.rtf
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\f0\fs24 \cf0 #### Description\
\
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\cf0 This directory contains the source code of the motion compensation algorithm described in the article \'93Imaging neural activity in the ventral nerve cord of behaving adult Drosophila\'94 by C. L. Chen, L. Hermans, M. C. Viswanathan, D. Fortun, M. Unser, A. Cammarato, M. H. Dickinson and P. Ramdya. The code is only for scientific or personal use.\
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\cf0 \
#### How to use\
\
- Install the MIJ library (http://bigwww.epfl.ch/sage/soft/mij/): copy the files \'93ij.jar\'94 and \'93mij.jar\'94 in the java folder of MATLAB (should be <path-to-Matlab>/java/jar).\
- Edit \'93setPath.m\'94: set the paths of the MIJ library\
- Run \'93setPath.m\'94\
- Edit \'93test.m\'94, Section \'93Input - Output\'94\
- Run \'93test.m\'94\
}
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\paperw11900\paperh16840\margl1440\margr1440\vieww17140\viewh8400\viewkind0
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\f0\fs24 \cf0 #### Description\
\
\pard\tx566\tx1133\tx1700\tx2267\tx2834\tx3401\tx3968\tx4535\tx5102\tx5669\tx6236\tx6803\pardirnatural\partightenfactor0
\cf0 This directory contains the source code of the motion compensation algorithm described in the article \'93Imaging neural activity in the ventral nerve cord of behaving adult Drosophila\'94 by C. L. Chen, L. Hermans, M. C. Viswanathan, D. Fortun, M. Unser, A. Cammarato, M. H. Dickinson and P. Ramdya. The code is only for scientific or personal use.\
\pard\tx566\tx1133\tx1700\tx2267\tx2834\tx3401\tx3968\tx4535\tx5102\tx5669\tx6236\tx6803\pardirnatural\partightenfactor0
\cf0 \
#### How to use\
\
- Install the MIJ library (http://bigwww.epfl.ch/sage/soft/mij/): copy the files \'93ij.jar\'94 and \'93mij.jar\'94 in the java folder of MATLAB (should be <path-to-Matlab>/java/jar).\
- Edit \'93setPath.m\'94: set the paths of the MIJ library\
- Run \'93setPath.m\'94\
- Edit \'93test.m\'94, Section \'93Input - Output\'94\
- Run \'93test.m\'94\
}
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