Diffusion akantu (bugfixes/python_interface_energy_computations) History

rAKA/src/geometry
bugfixes/python_interfa…e2fed53398804d5703c7650…

Nov 13 2020

Full rewrite of cohesive insertion to ensure the order of insertion across…
36b61f922c3e
·richart on Nov 13 2020, 18:25.
clang-tidy
2494dc4e9df3
·richart on Nov 13 2020, 18:25.

May 6 2020

Modifications for the documentation
f2b54f6e0331
·richart on May 6 2020, 20:17.

Jul 19 2019

arc lint --everything
fe2c711063a8
·richart on Jul 19 2019, 16:32.

Feb 23 2018

Rewrote the headers of the files in src
2d7e93b72235
·richart on Feb 23 2018, 22:03.
Linted everything 'arc --lint --erverything'
80101ddd6e28
·richart on Feb 23 2018, 15:42.

Feb 20 2018

Changed lot of iterators to auto
f1db0234fa4b
·richart on Feb 20 2018, 19:53.
No harsh termination, only exceptions thrown
7064d0e0638c
·richart on Feb 20 2018, 15:34.

Feb 1 2018

added allocating functor for material reinforcement
91043c4d1f37
·frerot on Feb 1 2018, 14:02.

Jan 31 2018

making embedded compile + remove pollution of K symbol with CGAL
d2eb26203eae
·frerot on Jan 31 2018, 16:30.

Nov 7 2017

Made Element a trivial type + change for gcc5
ddd46197b831
·richart on Nov 7 2017, 13:56.

Aug 13 2017

Changes getSize to size for compatibility with STL containers
a2a185177344
·richart on Aug 13 2017, 19:05.

Jun 19 2017

Changing namespace definition
f3288de80211
·richart on Jun 19 2017, 14:16.

Apr 2 2016

Removing warnings
5072a1c587f1
·richart on Apr 2 2016, 04:18.

Feb 18 2016

bug fix when dumping igfem elements, reverted CGAL Kernel to exact for IGFEm
ff6ea1d4bf3f
·Aurelia Cuba Ramos on Feb 18 2016, 14:22.

Feb 14 2016

changed spherical kernal from exact to lazy exact for lower computational cost
bd0538e685e2
·Aurelia Cuba Ramos on Feb 14 2016, 17:36.

Jan 18 2016

Updating headers + correcting some emails
336b0925e427
·LSMS Tester / richart on Jan 18 2016, 22:39.

Jan 15 2016

Updating the headers for the release 2.3
7dd9648d4655
·LSMS Tester / richart on Jan 15 2016, 17:03.

Jan 4 2016

added support for _triangle_6 elements for embedded model
b54eb50db774
·frerot on Jan 4 2016, 11:49.

Nov 15 2015

merging of mesh-sphere intersector
bb98fd1fc8eb
·Aurelia Cuba Ramos on Nov 15 2015, 18:12.
merge conflicts resolved
752fa47b5bbc
·Aurelia Cuba Ramos on Nov 15 2015, 17:35.
bug fixes to make Akantu compatible with IGFEM, function added in the SMM to…
cdefe134a4ae
·Aurelia Cuba Ramos on Nov 15 2015, 16:59.

Oct 28 2015

bug fix in parallel non-local, cleaning of mesh-sphere intersector, added…
1fc47bd6186e
·Aurelia Cuba Ramos on Oct 28 2015, 17:14.

Oct 26 2015

add comment to geometry sphere intersection
df7b935848b4
·Clement Roux on Oct 26 2015, 18:23.

Oct 5 2015

Fixing a memory leak
072d5639001c
·Marco Vocialta on Oct 5 2015, 10:35.
Another compilation fix
e23a7bad59ca
·Marco Vocialta on Oct 5 2015, 10:05.

Oct 4 2015

Bug fix to prevent the cohesive element inserter from increasing the global…
db26bbacce3f
·Marco Vocialta on Oct 4 2015, 23:52.

Oct 2 2015

Creation of a class to update the global connectivity in parallel, important…
733b401f9a72
·Marco Vocialta on Oct 2 2015, 19:23.

Oct 1 2015

Merge
420a05dec8ba
·Marco Vocialta on Oct 1 2015, 11:34.
Change of events in the mesh sphere intersector and new function to substitute…
f6a3b9d67f7f
·Marco Vocialta on Oct 1 2015, 11:20.

Sep 30 2015

igfem renumbering of segment ID from 1 to from 0
7ccdf3d721ec
·Clement Roux on Sep 30 2015, 18:39.
fully split geometry and igfem mesh generation
07bbbfc827a7
·Clement Roux on Sep 30 2015, 15:52.
renaming the new_nodes array into intersection_points
de3be14b9a19
·Clement Roux on Sep 30 2015, 14:46.
split geometry igfem mesh generation, and old way both working
c628220c8594
·Clement Roux on Sep 30 2015, 14:32.

Sep 28 2015

split geometrical operation and igfem mesh generation
a6bb3b424abe
·Clement Roux on Sep 28 2015, 18:29.
Adding an id to the mesh intersectors and adding onElementsChanged to…
d84828ca54c5
·Marco Vocialta on Sep 28 2015, 18:04.
non-local toolbox development continued, bug fix in quadrature point class, bug…
c5e8ee524ed2
·Aurelia Cuba Ramos on Sep 28 2015, 16:44.

Sep 21 2015

Compilation fix when igfem is disabled
ddb11f4fca12
·Marco Vocialta on Sep 21 2015, 20:55.
First step in the parallelism of the geometry
c4eea3cc3071
·Marco Vocialta on Sep 21 2015, 19:26.

Aug 11 2015

bug fix: wrong new node numbering
39d4aa35c584
·Aurelia Cuba Ramos on Aug 11 2015, 19:30.
Merge conflict resolved in MeshSphereIntersector
9054f18b641e
·Aurelia Cuba Ramos on Aug 11 2015, 11:08.
getInternal and getArray in Material are now templated, cleanup of flattened…
54b6e2f946d8
·Aurelia Cuba Ramos on Aug 11 2015, 09:08.

Jul 22 2015

fixed bug in MeshSphereIntersector
13659b265c30
·Lucas Frérot on Jul 22 2015, 14:59.
non const mesh in geometry module + cleanup + performance of compareSegments
571e9e349498
·Lucas Frérot on Jul 22 2015, 12:16.

Jul 17 2015

Specific check to handle mesh sphere intersection with an intersection on a node
880d1a7dac46
·Clement Roux on Jul 17 2015, 19:05.
Update and bug correction in the mesh_sphere_intersector
8fc612863c9d
·Clement Roux on Jul 17 2015, 13:48.

Jul 13 2015

made use of intersectors easier with MeshAbstractIntersector
77064f508581
·Lucas Frérot on Jul 13 2015, 18:09.
bug fix2: geometry no longer use igfem type if AKANTU_IGFEM == false
eb4edae5197c
·Clement Roux on Jul 13 2015, 11:48.
bug fix: geometry no longer use igfem type if AKANTU_IGFEM == false
e628a4c48c38
·Clement Roux on Jul 13 2015, 11:32.

Jul 10 2015

mesh sphere intersector ready for growing gel pockets
183a75ee20a5
·Clement Roux on Jul 10 2015, 14:50.

Jul 9 2015

Use of exact number type for spherical kernel
b2845cd192b7
·Clement Roux on Jul 9 2015, 10:34.

Jul 8 2015

bug fix in mesh-sphere intersector: element kind of new elements has to be…
721c4b4a7265
·Aurelia Cuba Ramos on Jul 8 2015, 12:22.

Jun 26 2015

cleanup in geometry + embedded and doc
a9c709129833
·Lucas Frérot on Jun 26 2015, 12:19.

Jun 25 2015

double element (new and old) send in the add element event for IGFEM cut
2f85cbcb8ea2
·Clement Roux on Jun 25 2015, 18:40.
Split of the IGFEM mesh generation test and it CGAL part
5d7764e9ea8e
·Clement Roux on Jun 25 2015, 17:38.
removed mesh_geom_spherical_traits.hh
66c35080d409
·Lucas Frérot on Jun 25 2015, 10:54.

Jun 24 2015

Update mesh_sphere_intersector way of testing if the node is new and use of…
494e7caf741a
·Clement Roux on Jun 24 2015, 17:33.

Jun 23 2015

Mesh sphere intersection for igfem triangles
952d48f6a374
·Clement Roux on Jun 23 2015, 08:03.

Jun 4 2015

added possibility to not use AABB tree algo + typo
0259fd809386
·Lucas Frérot on Jun 4 2015, 15:56.

Jun 2 2015

fixed link problem + added spherical traits file
46357dcc7b48
·Lucas Frérot on Jun 2 2015, 17:02.
intersect CGAL sphere line_arc, need custom AABBTraits
7b204375a02f
·Clement Roux on Jun 2 2015, 16:05.

May 19 2015

fixed bug in intersection mesh generation
70007b7a1ff6
·Lucas Frérot on May 19 2015, 09:47.

May 13 2015

intersection algo rework + easier typedefs for CGAL kernels
3a7f82272ac2
·Lucas Frérot on May 13 2015, 17:07.

May 11 2015

fixed tetrahedron intersection algorithm and improved geometry tests
bbba53beef35
·Lucas Frérot on May 11 2015, 16:09.

May 6 2015

fixed tetrahedron intersection algorithm for special cases
0e40eeba7193
·Lucas Frérot on May 6 2015, 11:37.

May 4 2015

modified TREE_TYPE_HELPER_MACRO
01701e25c678
·Lucas Frérot on May 4 2015, 10:06.

May 1 2015

reinforcements can now be read in a seperate mesh
8e99f234f929
·Lucas Frérot on May 1 2015, 10:31.

Apr 29 2015

geometry module rework
18c859a8b7a5
·Lucas Frérot on Apr 29 2015, 15:01.

Apr 28 2015

Documentation of geometry module and embedded interface model
18c0e9769242
·Lucas Frérot on Apr 28 2015, 13:58.

Mar 30 2015

Corrected bugs with embedded model
b6583ee9cc52
·Lucas Frérot on Mar 30 2015, 17:55.

Mar 26 2015

Added computation of mesh intersections for _tetrahedron_4 elements
66bd85835912
·Lucas Frérot on Mar 26 2015, 16:11.

Mar 25 2015

Finished implementing embedded model
3bf2516c3195
·Lucas Frérot on Mar 25 2015, 14:46.

Mar 13 2015

Simplified extension of geometry module and added mesh generation test
cf8698bc1a6a
·Lucas Frérot on Mar 13 2015, 16:11.

Mar 10 2015

Improved memory management in interface mesh generation
e415564c78d8
·Lucas Frérot on Mar 10 2015, 16:51.

Mar 6 2015

Added multiple interface mesh generation in MeshGeomContainer
9ed616e4953c
·Lucas Frérot on Mar 6 2015, 17:16.

Mar 5 2015

Added interface mesh generation in MeshGeomFactory
52c2590896dc
·Lucas Frérot on Mar 5 2015, 10:30.

Mar 3 2015

Added retrieval of element id from CGAL intersection algorithm
6e1f26369a99
·Lucas Frérot on Mar 3 2015, 17:01.

Mar 2 2015

Renamed classes in geometry. Partial impl of MeshGeomContainer
6f5a917d023b
·Lucas Frérot on Mar 2 2015, 11:01.

Feb 27 2015

Changed structure of geometry module
face17120e14
·Lucas Frérot on Feb 27 2015, 15:18.

Feb 20 2015

Removed CGAL header from geometrical_primitive.hh
622e196967be
·Lucas Frérot on Feb 20 2015, 08:53.

Feb 19 2015

Added geometry module using CGAL, with point, segment and triangle…
a408fb1d8c34
·Lucas Frérot on Feb 19 2015, 18:43.