Diffusion akantu (features/changes-to-address-joss-review) History

History
features/changes-to…0183db140277c93f42ff8a8…

Mar 27 2019

First correct solution obtained with PETSc
0183db140277
·richart on Mar 27 2019, 15:52.

Mar 13 2019

refactoring some assembly code
82efd2d855ec
·richart on Mar 13 2019, 12:50.

Mar 7 2019

This seams to work to assemble with multiple dofs and in parallel (needs a bit…
2ff5e44cc57d
·richart on Mar 7 2019, 16:14.

Feb 26 2019

missing mesh for test dof_manager
1768db555b92
·richart on Feb 26 2019, 12:49.
communicator test
7c46a0ebaaaa
·richart on Feb 26 2019, 12:49.
oversubscribe
91bf9f361630
·richart on Feb 26 2019, 12:48.
Adding modules for debug
89582c779053
·richart on Feb 26 2019, 12:48.
Refactoring code between dof_managers
0caf92148c1b
·richart on Feb 26 2019, 12:48.

Jan 30 2019

namespacing the type traits
449964d7deb7
·richart on Jan 30 2019, 11:11.
Moving models common tests in a subfolder
ff0b937e9de3
·richart on Jan 30 2019, 11:09.

Jan 6 2019

Working start point
d3fcb3f40e61
·richart on Jan 6 2019, 22:07.

Jan 3 2019

Bug fix in SolverVector
8a5df0c6141d
·richart on Jan 3 2019, 01:31.

Jan 2 2019

PETSc compiles adding SolverVector
05a352d13d99
·richart on Jan 2 2019, 17:42.

Dec 30 2018

Bug fixing some tests + sanitizing them
bb1dc4591df5
·richart on Dec 30 2018, 15:53.
Scoping more enums
ef8b48beb2fc
·richart on Dec 30 2018, 15:40.

Dec 28 2018

DOFManagerPETSc almost compiling
926d81321873
·richart on Dec 28 2018, 16:14.
Bug fix in petsc detection
8d21af83eceb
·richart on Dec 28 2018, 16:14.
advancing in the petsc dof manager
08a4aeef80c5
·richart on Dec 28 2018, 16:14.
updating the matrix definition
81e90b9978ef
·richart on Dec 28 2018, 16:06.
Scoping some enums
08b1837389c4
·richart on Dec 28 2018, 16:03.
Long overdue cleaning in the model folder
d41cf25de0e0
·richart on Dec 28 2018, 15:48.
Updating FindPETSc
ec18546f5fb3
·richart on Dec 28 2018, 15:44.
adding bool as a mesh_data
7237f444b33e
·richart on Dec 28 2018, 14:54.

Dec 24 2018

Merge branch 'master' of c4science.ch:/diffusion/AKAPRIV/akantu-private
f3474ad9c8d7
·richart on Dec 24 2018, 11:39.

Dec 20 2018

Added tests for extrinsic cohesive elements with finite def elastic material.
f80af9943df5
·brink on Dec 20 2018, 17:36.

Dec 19 2018

Correction in the energies output
f5f630999cd5
·gallyamov on Dec 19 2018, 13:07.

Nov 22 2018

Bug fix in material viscoelastic
089d572bcbb4
·gallyamov on Nov 22 2018, 15:53.

Nov 20 2018

Merge branch 'master' of ssh://c4science.ch/diffusion/AKAPRIV/akantu-private
e317d05f3111
·gallyamov on Nov 20 2018, 10:33.
Merge branch 'features/viscoelasticity_maxwell'
aa499870207c
·gallyamov on Nov 20 2018, 10:31.
Adding test and example on viscoelastic material
5c785d1b9311
·gallyamov on Nov 20 2018, 10:29.

Nov 19 2018

Added energy computing functions to viscoelastic material
48be6004b2b8
·gallyamov on Nov 19 2018, 10:34.

Nov 9 2018

Bug fix in parallel cohesive insertion:
7b2e468f963a
·richart on Nov 9 2018, 16:00.
increasing compatibility of iterators with stl iterators
74848b91ed80
·richart on Nov 9 2018, 15:58.
Adding -ggdb3 as compilation flags
e29cbbbae46b
·richart on Nov 9 2018, 15:58.
Adding scan and exclusiveScan in the communicator
71ddf3ad432b
·richart on Nov 9 2018, 15:57.
Minor changes in Jenkinsfile
78e9ecbabded
·richart on Nov 9 2018, 12:33.

Nov 6 2018

Bug fix in python interface
385484478fa9
·richart on Nov 6 2018, 20:23.
Bug fix in the node data reader and synchronizer
0988ff27c1d9
·richart on Nov 6 2018, 18:45.
try more advances debug flags
195c4be2fa7a
·richart on Nov 6 2018, 17:02.
solved some swig issues
7e2cd66c9507
·richart on Nov 6 2018, 17:02.
modernizing material macro
d02061c6e2d6
·richart on Nov 6 2018, 17:02.
Abaqus reader broken with Boost 1.67 (wont fix)
6b6d5ac0192c
·richart on Nov 6 2018, 17:01.

Nov 5 2018

Missing file
1422395dd95b
·richart on Nov 5 2018, 10:31.

Nov 2 2018

Merge branch 'master' of c4science.ch:/diffusion/AKAPRIV/akantu-private
36fec1bff140
·richart on Nov 2 2018, 17:09.
making firstType lastType deprecated + bug fix in internalfields
052424c24651
·richart on Nov 2 2018, 17:06.

Oct 31 2018

bug fixes in 1d
41a834663730
·richart on Oct 31 2018, 10:32.
modernizing some code
ed8a2ee04528
·richart on Oct 31 2018, 10:31.
Bug fix in array resize
04f6203383ea
·richart on Oct 31 2018, 10:31.

Oct 30 2018

Merge branch 'master' of ssh://c4science.ch/diffusion/AKAPRIV/akantu-private
1867ffea9c11
·Luke on Oct 30 2018, 11:20.

Oct 18 2018

Protecting path
adda5cb009fb
·richart on Oct 18 2018, 11:28.
Jenkinsfile debugging
d356df49d348
·richart on Oct 18 2018, 11:24.

Oct 17 2018

Adding parameters to the build
d93d78692b7e
·richart on Oct 17 2018, 20:18.
Updated ntn contact to make it compile
86cbcad5ff57
·richart on Oct 17 2018, 20:10.
Merge branch 'master' of ssh://c4science.ch/diffusion/AKAPRIV/akantu-private
a99d58033c6b
·Luke on Oct 17 2018, 15:49.
Cohesive element corretion due to pbc branch merge
c49e61deed71
·richart on Oct 17 2018, 13:50.
revised PYTHON and LDPATH
3275705df6f6
·Luke on Oct 17 2018, 12:23.

Oct 16 2018

Adding computeBarycenters to the python interface
33eaf7cb000e
·richart on Oct 16 2018, 18:16.

Oct 12 2018

Correcting the bug of insertion finite_deformation and dump (again)
091d83ec5d79
·richart on Oct 12 2018, 14:26.

Oct 10 2018

Merge branch 'features/pbc'
0dc284119849
·richart on Oct 10 2018, 10:26.

Oct 9 2018

correcting mesh_io_msh nodedata
e129d486a1a0
·richart on Oct 9 2018, 12:50.

Sep 25 2018

Merge branch 'master' of c4science.ch:/diffusion/AKAPRIV/akantu-private
17fde1346772
·richart on Sep 25 2018, 18:06.
Adding the mesh nodal data to the python interface
7b78eda9f30a
·richart on Sep 25 2018, 17:39.

Sep 13 2018

default values for InternalField members
46063ac227c6
·frerot on Sep 13 2018, 18:42.
modernizing InternalField
6068be0bf5d8
·frerot on Sep 13 2018, 13:10.

Sep 12 2018

Adding transform adaptor and nodedata in mesh data
023a4b630b0e
·richart on Sep 12 2018, 13:22.

Sep 6 2018

Bug fixed. Both relaxation and creep tests work now.
6c3f44f613c6
·gallyamov on Sep 6 2018, 14:04.

Sep 5 2018

make periodic debugging
8ec3c922e7ee
·richart on Sep 5 2018, 13:49.
Making compilation work with gcc >= 8
a835a3214c48
·richart on Sep 5 2018, 13:48.

Aug 29 2018

Merge branch 'master' of c4science.ch:/diffusion/AKAPRIV/akantu-private
7dc81cfc7ec7
·richart on Aug 29 2018, 14:08.
Adding some functions in the python interface
71beddeb9549
·richart on Aug 29 2018, 14:08.
Expanding single Maxwell element to Maxwell chain
7ef5d59b37a7
·gallyamov on Aug 29 2018, 09:37.

Aug 15 2018

Expanded the "Compiling your simulation" part of the manual.
a7b87ab7f810
·brink on Aug 15 2018, 15:26.
Sourcing the environment file
cc267756e92b
·richart on Aug 15 2018, 15:11.

Aug 14 2018

modified fe_engine python interface
00b736ea3a6f
·richart on Aug 14 2018, 17:55.
Modified Jenkinsfile to report states
ce27c97d465b
·richart on Aug 14 2018, 17:55.

Aug 10 2018

refactoring fieldTimesShapes in computeNtb
f4dd6b579644
·richart on Aug 10 2018, 16:29.
Few compilation fixes for gcc>=8
ed8607e8f267
·richart on Aug 10 2018, 15:30.

Jul 19 2018

commit to push before vacations: this version is currently broken
327aad04af0a
·richart on Jul 19 2018, 16:57.

Jun 19 2018

Implementing missing function fir makePeriodic
d35974ef9782
·richart on Jun 19 2018, 15:07.
Add google-benchmark for benchmarking
ccded5305f53
·richart on Jun 19 2018, 13:47.
Rewrote the equation numbers to work properly with pbc
d06c0a0487e5
·richart / gallyamov on Jun 19 2018, 12:30.

Jun 17 2018

minor improvements
8b3453beaf64
·• arichart on Jun 17 2018, 23:45.
make it compile in sequential too
f2c01b8dc4fc
·• arichart on Jun 17 2018, 23:45.
Fix for nodeflag change
9d1800564f97
·• arichart on Jun 17 2018, 23:44.
Bug fix if periodic mesh have more than one dof per node
2ec7f7581cc7
·• arichart on Jun 17 2018, 23:44.

Jun 15 2018

Initialize the is_periodic variable
40c729a672b7
·richart on Jun 15 2018, 12:03.
Pre-working stage for PBC:
d4f0b6028779
·richart on Jun 15 2018, 11:02.

Jun 6 2018

added previous state restore on Material
ce2730d54e3e
·frerot on Jun 6 2018, 11:47.
added restore history to InternalField
0fa983932f3b
·frerot on Jun 6 2018, 11:14.

Jun 4 2018

Adding viscoelastic material based on Maxwell chain
48e41e3e8385
·gallyamov on Jun 4 2018, 13:39.

May 30 2018

Multiple changes in order to start implementation of periodicity
033a8225e32a
·richart on May 30 2018, 14:47.

May 17 2018

Merge branch 'master' of c4science:/diffusion/AKAPRIV/akantu-private
6a2d279265ae
·richart on May 17 2018, 17:04.

May 1 2018

added physical names selector to python interface
cf9971ddd98a
·frerot on May 1 2018, 15:50.
removed import mpi4py from python module
0d46473e9018
·frerot on May 1 2018, 15:50.

Apr 17 2018

adding debug info in makePeriodic
ba0d478cf0b3
·richart on Apr 17 2018, 17:53.

Apr 9 2018

Syntax error in mesh.cc DEBUG_ERROR -> ERROR
195608c9be30
·richart on Apr 9 2018, 14:53.

Apr 4 2018

NodeType becomes NodeFlags + node_prank
7d530d027fd0
·richart on Apr 4 2018, 17:53.
Adding BBox
e71e540aaa48
·richart on Apr 4 2018, 17:10.
correction in DynamicCommunicationBuffer
7f933d1c9d7c
·richart on Apr 4 2018, 17:10.
namespace correction
8ea334aed4ad
·richart on Apr 4 2018, 17:10.

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History
features/changes-to…0183db140277c93f42ff8a8…