Continue update/fix single model and example

clean parameters parsing in single example

further improvement examples single.cpp

fix chloride single example

Add a new simple reactive transport system

Fix compilation error, gcc 10

WARNING !!! change test so that it passes, must check gibbs energy meaning in db

specmicp:solver add automatic initialization from simplex solver

common:simplex improve degeneracy/cycling, to improve further

specmicp:minor disable solid solution if not solid phases to solve

minor: some licence date updates

database: add_molar_masses for elements

database:add simple Gibbs energy of formation

specmicp_common: add simplex solver

specmicp:solid solution add print/config for solid solutions

chloride:minor small fixes

common:minor fixes in API

common:API:minor fix missing DLL_PUBLIC

build:fix missing condition to disable LTO

build: modernize cmake files

build:fix visibility flags for specmicp_common

system: only number equations when need to solve systems

specmicp: first implementation of solid solutions

micpsolver:fix minor typo in micpsolver

micpsolver:minor modifications in linesearch to get non-finite lambda

specmicp:system clean equation numbering

database: add solid solutions in database

data: Add Cemdata18 as a database

chlorides:example update example

chloride:eqstagger turn off solver non ideality while perturbating solution

specmicp:minor adds some asserts in AdimSolver

reactmicp:chloride small improvements - running simmulation

mesh: add custom nodes coordinates mesh (+conf)

reactant_box: add access to surface model

specmicp: add fixed saturation constraints

specmicp:extractor: add effective saturation index functions

bugfix: pow10 was a glibc nonposix extension

reactmicp: chloride Perturbation of adim solution only solves aqueous species

specmicp:solver add function to merge mobile and immobile solutions

specmicp: add option to disable immobile species in solver

reactmicp:chloride improve ChlorideHDF5Reader

reactmicp:binary add chloride binary (and an example)

minor:reactmicp:binaries update example input files

minor:common:config correct missing template for list_to_vector

reactmicp:chloride small fixes all around

fix:reactmicp initialize timers correctly

bin:reactmicp factorize some function in reactmicp app_core

common:safe_config fix map iterator, to iterate over different types

adim:tests correct jacobian test precision

dfpm:test make sure last noe of axisymmetric mesh is at 0

test: bump catch2 to version 2.3.0

reactmicp:chloride start working towards exec for chloride system

reactmicp:runner move some function of SimulationInfo to cpp file

reactmicp:bin reorganize unsaturated binary to allow reuse for chloride binary

common:openmp improve eigen parallel support

database:print add member to print general info in conf log

reactmicp:chloride improve boundary conditions and add configuration

reactmicp:systems move AdimConstraints into common

reactmicp:common move configuration for equilibriumOptionsVector to common

reactmicp:chloride add HDF5 reader/saver

reactmicp:chloride misc improvement

reactmicp:unsaturated update to new common reactmicp system

reactmicp:systems add common to gather boilerplates between systems

common:hdf5 add partial read of datasets

hdf5:timesteps add member to retrieve timesteps as strings

reactmicp:chloride constraints is provided by BCs

reactmicp:chloride add init_variables

reactmicp:chloride transport stagger now use chem stagger

reactmicp:chloride use openmp in transport stagger

reactmicp:minor public classes in libraries

Merge branch 'chloride' of bitbucket.org:specmicp/specmicp into chloride

reactmicp:chloride bit of cleaning in transport program

examples: update momas example to new sorption

major:specmicp add sorption EDL model

major:database new sorbed species system

minor: modify benchmarks to new benchmark version

database:breaking refactor interface: only one surface site per sorbed species

database:breaking Add multiple surface sites

specmicp: update specmicp system to new database format

example: update migration example

build:minor add option to disable reactmicp system

minor:chloride make sure test run faster.

common:fix density computation

chloride: add examples

chloride: fixes for chemistry solver in transport program

specmicp: add charge balance computation in extractor

chloride: perturb adim, current and potential init

mesh:minor check input for range mesh

chloride: good equilibrium obtained for Na/Cl system

dfpm:minor style corrections

tmp: lot small changes for system transfer

common:add helpers function for eigen

chloride: more work on the chloride system

fix:Smart solver now use units from reactant box

chloride:fix with tests

reactmicp:add helper function to transform dfpm return code

continuing chloride system implementation

common:add a generic return code for solver-agnostic algorithms

reactmicp: add member to ChemistryStaggerBase

chloride: first commit for new chloride system