for new module path

markdown version of readme

Merge branch 'workstation' of ssh://c4science.ch/diffusion/6289/motion…

update

change of orientation for vecrtor field

added hidden osx relict

for mac

regitration to recompute for video

update

rotated and cyan

for figures and video

generating figure

update

divergence calculation

commenting and uncommenting to avoid garbage collector problem

update

multiple lambda and gamma for on post deepmatching step

multiple calles of test inside one matlab session for different lambda and…

removed .m from gitignore

moved lamda and gamma to json

update

fix wrong name of tdTom file

fixed yellow unregistered panel

run and json files for three more experiments

reduced time for 200frames to 10min

parallelized preprocessing and moved json specification to pipeline.run

fixed difference in brighness

removed extra slices

pipeline ready for data analysis

revert master branch to original release code

for the moment last commit for translation to python

fixed typos

annotation test 6

annotation test animal 5

annotation of test4

third animal

use matlab parts in of_l1_l2_fm_admm

ignore mac folder parameters, swp and mp4

added off-set events

automated version

changed index for head related grooming from 3 to 2

annotation of test experiment 2

unfinished of_l1_l2_fm_admm for back up

interim stage

update

changed lambda to lmbd

removed *.o

made code a submodule

made motioncorrection a module

partial translation into python

initial matlab code from Denis Fortun

working version for one test experiment

first annotation for test animal

preliminary version of ethogram creation with eventplot