adding the keepalive to protect mis-delete of mesh

mesh holder is now shared

Merge branch 'bugfix/74-2d-thermal-expansion-missing' into 'master'

pyleaflet not working with latest jupyter

fix bug old version if notebook

remove broken dependency

rename rules

update the dockerfile

adding rule to build the image

using kaniko

update dockerfile

modify the dockerfile

update dind image

rename test

fix header of python files

update images

update the dependencies (compatibility with noto)

script more evolved

split auto grade from manual grade

lower dependencies to matplotlib version

typo corrections

adding the missing pieces for latex

forgot the rise extension

adding a docker for deploying on dcsm easily

adding the installation of contri extensions

update the ci

unrigister FEEngine when desctructed

started an example specifying a feengine manually

allows to change the feengine from python

moved the concepts in aka_types

cleaning

starts a modular fe engine

Merge remote-tracking branch 'origin/bugfixes/akantu-as-library-in…

add include

update akantu

update revision

only git based

update iohelper

upgrade pybind version to fix bug

making the default with both mumps and petsc

clean the enums for nls

cleaning code for petsc nls

fix init bug in sparse Petsc matrix

working petsc nls

alow to restore solution state in model for petsc nls

modernize code to c++-17

adding a possibility to use local petsc

still try to debug the nsl solver

print functions for sparse matrices/vectors

remove the useless callback and rearrange nls

c++ 17 style

comment for understanding

start testing the petsc SNES

adding an image

do not reset options to avoid cancelling options passed at command line

fix python part for ModelOptions

parameter for petsc in test

fix bug solve phase field problem on a test

auto range loop c++-17

debug save of matrix for debug purpose commented

c++ range loop

allows solver_options in initFull

do not pass blocked dofs when solving the lumped system: unnecessary

renaming back to SolverVector

petsc verified becomes the same as with mumps implicit

remove warnings

use the scaling for solving lumped with petsc

correct warning for obsolete calls

enable solvervector resize and update of petsc IS from dofmanager

line formating

remove duplicate member in daugther class

remove useless member of dofdata

configure solver for eigenstrain test

configure solver for elasto-plastic test

fix multi material test: matrix profile not fixed

working solverlumped with petsc dof_manager

adding a version safer but with a copy

use cholesky param in fixture

allow controling the sparse_solver from python

handle python command parameter with akantu parser

prevent petsc to finalize mpi (as mpi4py may have done it already)

cleaning

saving state

cleaning

cleaning

Merge branch 'features/solver-rewrite' of gitlab.com:akantu/akantu into…

error handler for PETSc generates nice Akantu exceptions

updateinternal called from the parser

set default solver in model options

Update Dockerfile

set package

protect mumps for compilation

secure the compilation if petsc is not activated

protect code for when petsc not activated

fix bug at destruction of dof_manager

fix petsc for lumped solver type

cholesky preconditioner passes the tests

changing tol for petsc tests: to check

passing correctly the options to petsc

broken