remove a test not suposed to run in sequential

removes a wrong clear of elastic constants in anisotropic law

allow to initialize the material manually

correct uninitialized values from materials

correct a memory fault problem with the pbc

some changes to make PBC work again in sequential: to review

Merge commit '6f65103bbed23c65deb66a484bc8fb13f04216f4' into HEAD

use new iterators on types

extend communicator creation in akantu

set tag upper bound based in MPI_COMM_WORLD

fix compilation error for c++17 standard

adding a simple tool to see what the parser sees

adding an extraction tool for snippets

Merge branch 'master' of ssh://c4science.ch/source/sp4e

saving the test script

saving the pybind lecture

saving the lecture

fix execution of python snippet

managing the execute for python snippets

adding the snippets for python

snippets for eigen

adding the lecture of the day

correcting the slicing of snippets

make a proper message for bad parsing

adding the presentation template

adding the meshdatamaterialselector handling

Merge branch 'master' of ssh://c4science.ch/diffusion/AKAPRIV/akantu-private

Merge branch 'master' of ssh://c4science.ch/diffusion/AKAPRIV/akantu-private

temporary fix to pass a numpy to be dumped

adding a adddumpfieldexternal

adding the example on finite rotation in dynamics

saving the test for large rotations

dirty hack to allow to dump a numpy array

add library dependence for aka pybind

adding possibilities for the element/node groups

adding a feature for node groups

fix bug on the group manager python interface

Remove the raw pointers on dumper::Fields

remove a warning

added the possibility to build dumper::Field in python

adding a full example with eigen mode treatments

renaming a file

adding a few methods for solidmechanics model

change a path

revert the BC namespace

sparse matrix example working in pybind

towards sparsematrix

heat transfer patch test working

adding the heat transfert interface

removing python files useless now thanks to pybind

on my way to fix heattransfer tests

remove swig completely

towards sparsematrix

removing swig

change a path

change path and last example

update the patch tests for pybind and pytest

adding a test for meshes

adapt the test for pytest and pybind

tests run with pytest-3: need cmake expert to make it clean

complement the python interface

bc test in pytest

bind node/element groups

remove nonexisting call in the pybind interface

Correction of the default element types within element_type_map:

correct the construction of the element filter with ek_regular

change getForce to getExternalForce in a test

clang formating

remove call to mother material computepotential doing nothing

Force format 2 for generated msh files with CMake scripts

remove Dirichlet namespace in test

Merge branch 'master' into features/pybind11

adding an example extracting the stiffness amtrix

modifying the swig temporarily to have access to aij sparse matrices

adding an example extracting the stiffness amtrix

remove the Dirichlet and Neumann namespaces

cohesive example in pybind working: still to test

adding element group and prepare pytest

revert my stupid change

adding a mpi example

improved error message

remove the ghost type in energy based things

finish binding of cohesive models

binding the solidmechanicsmodelcohesive

splitting the files

splitting the files

working materials

adding the python example with cohesive elements

splitting files for the parser

all python examples working in sequential

splitting the files

correct the problem of material thermal not having an implementation of…

working bi-material example with custom material in pybind

fix bi-material example for pybind

adding test and dynamic example now working

still working on the materials for python

cleaning the materials energy computation ghost prototypes

tests good for array, vector and matrix

correct the initialization problem with materials

remove the useless namespaces Dirichlet and Neumann