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matt (Matthieu Haeberle)

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User Details

User Since
Nov 1 2021, 14:34 (5 w, 2 d)
Availability
Available
Organization
epfl.ch (university)

Recent Activity

Mon, Dec 6

matt committed R11301:1a514eeaa66c: Added partial molecule penalty (authored by matt).
Added partial molecule penalty
Mon, Dec 6, 15:55

Sun, Dec 5

matt committed R11301:a6c6e4a68e80: fixed objective value (authored by matt).
fixed objective value
Sun, Dec 5, 01:44

Fri, Dec 3

matt committed R11301:3005d8c71b0b: Added back molecule duplication - limited to 3 copies for perfomance (authored by matt).
Added back molecule duplication - limited to 3 copies for perfomance
Fri, Dec 3, 14:57

Tue, Nov 30

matt committed R11301:2ae2563a46c3: Switched to ideal databases. Removed duplicate molecules until objective… (authored by matt).
Switched to ideal databases. Removed duplicate molecules until objective…
Tue, Nov 30, 01:36

Thu, Nov 25

matt committed R11301:3744c8b0cf63: Removed (commented) the connectivity conditions that were based on adjacency… (authored by matt).
Removed (commented) the connectivity conditions that were based on adjacency…
Thu, Nov 25, 16:41

Mon, Nov 22

matt committed R11301:b1b6ccce0c15: Added preprocessing of the connectivity matrices to improve on runtime; various… (authored by matt).
Added preprocessing of the connectivity matrices to improve on runtime; various…
Mon, Nov 22, 15:26

Sat, Nov 20

matt committed R11301:23da2886dc0f: Memory improvements; readded taking molecules multiple times. (authored by matt).
Memory improvements; readded taking molecules multiple times.
Sat, Nov 20, 18:49

Fri, Nov 19

matt committed R11301:3ae7e7d2c4ca: Added weak connectivity conditions on fragments of molecule taken. Issues… (authored by matt).
Added weak connectivity conditions on fragments of molecule taken. Issues…
Fri, Nov 19, 19:46

Tue, Nov 16

matt committed R11301:3d34d30e4e22: Removed partial target matching; added parameter for size of molecule fragment (authored by matt).
Removed partial target matching; added parameter for size of molecule fragment
Tue, Nov 16, 13:46

Fri, Nov 12

matt committed R11301:1463d851f136: Improved output runtime; now prints old positions (indices+1) before… (authored by matt).
Improved output runtime; now prints old positions (indices+1) before…
Fri, Nov 12, 13:37

Thu, Nov 11

matt committed R11301:cad06c9aec83: Modifed preprocessing to remove hydrogens; various changes on onepass (i forgot… (authored by matt).
Modifed preprocessing to remove hydrogens; various changes on onepass (i forgot…
Thu, Nov 11, 16:28

Wed, Nov 10

matt committed R11301:bd45bf0be154: Merge branch 'master' of https://c4science.ch/diffusion/11301/molekuehl (authored by matt).
Merge branch 'master' of https://c4science.ch/diffusion/11301/molekuehl
Wed, Nov 10, 14:48
matt committed R11301:51ebee2f6454: Enhanced output; fixed size constraints. (authored by matt).
Enhanced output; fixed size constraints.
Wed, Nov 10, 14:48

Tue, Nov 9

matt committed R11301:6b022f2e9bb6: Allow partial molecule with threshold; force portion of target to be assigned… (authored by matt).
Allow partial molecule with threshold; force portion of target to be assigned…
Tue, Nov 9, 16:22
matt committed R11301:ee3c54d0dd06: First sketch of preprocessing; allowed taking molecules multiple times (authored by matt).
First sketch of preprocessing; allowed taking molecules multiple times
Tue, Nov 9, 14:45

Nov 8 2021

matt committed R11301:a440a7a3f8b0: Added output for stored solutions; time and gap limits. (authored by matt).
Added output for stored solutions; time and gap limits.
Nov 8 2021, 16:51

Nov 5 2021

matt committed R11301:d457ff7a09fe: Few changes to improve running time (authored by matt).
Few changes to improve running time
Nov 5 2021, 19:19

Nov 4 2021

matt committed R11301:d3cf1ed4215f: Code refactoring (authored by matt).
Code refactoring
Nov 4 2021, 14:17

Nov 3 2021

matt committed R11301:ec9dddbcc754: few fixes (authored by matt).
few fixes
Nov 3 2021, 17:47
matt committed R11301:2870d9c1d762: New file aiming for one-pass algorithm based on gurobi.py. (authored by matt).
New file aiming for one-pass algorithm based on gurobi.py.
Nov 3 2021, 17:47

Nov 2 2021

matt committed R11301:67a64e4986a7: Revert last commit (authored by matt).
Revert last commit
Nov 2 2021, 16:07
matt added a reverting change for R11301:e2bd4b3dbe78: Added penalty on size of molecule (needs later tuning): R11301:67a64e4986a7: Revert last commit.
Nov 2 2021, 16:07
matt committed R11301:b06fc17d9898: Actually added size penalty this time (authored by matt).
Actually added size penalty this time
Nov 2 2021, 16:07
matt committed R11301:e2bd4b3dbe78: Added penalty on size of molecule (needs later tuning) (authored by matt).
Added penalty on size of molecule (needs later tuning)
Nov 2 2021, 15:35
matt committed R11301:a1f2b52fe731: Added loop on candidate molecules M to find best objective value (authored by matt).
Added loop on candidate molecules M to find best objective value
Nov 2 2021, 15:35
matt committed R11301:7d7c6bfa4252: Added timer on definition of each model; need to fix high running time leading… (authored by matt).
Added timer on definition of each model; need to fix high running time leading…
Nov 2 2021, 15:35

Nov 1 2021

matt updated matt.
Nov 1 2021, 14:48