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tlemaire (Théo Lemaire)

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User Details

User Since
Aug 21 2017, 12:19 (199 w, 3 d)
Availability
Available
Organization
epfl.ch (university)

Recent Activity

Yesterday

tlemaire committed R4670:41830bd40849: updated transient divergence evaluation in passive benchmark (authored by tlemaire).
updated transient divergence evaluation in passive benchmark
Thu, Jun 17, 18:45
tlemaire committed R4670:4792bed35eeb: added XYMap.extrapolate method. modified XYMap.getOutput to return (nx, nz)… (authored by tlemaire).
added XYMap.extrapolate method. modified XYMap.getOutput to return (nx, nz)…
Thu, Jun 17, 13:34

Wed, Jun 16

tlemaire committed R4670:48840d13cdab: added frac_format function. added inaxes check upon map clicking in XYMap (authored by tlemaire).
added frac_format function. added inaxes check upon map clicking in XYMap
Wed, Jun 16, 23:09
tlemaire committed R4670:1e6c565cde54: modified exponential build up assessment in passive benchmark (authored by tlemaire).
modified exponential build up assessment in passive benchmark
Wed, Jun 16, 23:09
tlemaire committed R4670:d84713700744: removed clip_on statements (authored by tlemaire).
removed clip_on statements
Wed, Jun 16, 23:09
tlemaire committed R4670:7368aa8d6260: added getTimeStr function (now used in Batch.run) (authored by tlemaire).
added getTimeStr function (now used in Batch.run)
Wed, Jun 16, 12:52

Tue, Jun 15

tlemaire committed R4670:d3109cf80990: added minimize overlap argument on protocol array initialization (authored by tlemaire).
added minimize overlap argument on protocol array initialization
Tue, Jun 15, 17:58
tlemaire committed R4670:a34dc74734dc: added functionalities to optimize protocol array (minimizing overlap) (authored by tlemaire).
added functionalities to optimize protocol array (minimizing overlap)
Tue, Jun 15, 17:49
tlemaire committed R4670:92d6fbb787e5: removed print statement in ProtocolArray.plot (authored by tlemaire).
removed print statement in ProtocolArray.plot
Tue, Jun 15, 14:56

Mon, Jun 14

tlemaire committed R4670:c811bdc9181b: defined StimObjArray class, niherited by DriveArray and ProtocolArray classes (authored by tlemaire).
defined StimObjArray class, niherited by DriveArray and ProtocolArray classes
Mon, Jun 14, 21:47

Wed, Jun 9

tlemaire committed R4670:0732d479739d: modified CustomProtocol string representation, enabled robut protocol summing… (authored by tlemaire).
modified CustomProtocol string representation, enabled robut protocol summing…
Wed, Jun 9, 20:56
tlemaire committed R4670:f456a30eea93: added os_name as logbal variable in utils. now using it also to output LogBatch. (authored by tlemaire).
added os_name as logbal variable in utils. now using it also to output LogBatch.
Wed, Jun 9, 17:25
tlemaire committed R4670:d660732a8200: implemented addition between time protocols and multiplication by scalar (authored by tlemaire).
implemented addition between time protocols and multiplication by scalar
Wed, Jun 9, 16:22
tlemaire committed R4670:41522f45c0c7: added workaround to coupled_nbls simAndSave method to handle long filepaths on… (authored by tlemaire).
added workaround to coupled_nbls simAndSave method to handle long filepaths on…
Wed, Jun 9, 00:39

Tue, Jun 8

tlemaire committed R4670:82b931897c27: worked on benchmark plotting modularity (authored by tlemaire).
worked on benchmark plotting modularity
Tue, Jun 8, 22:12
tlemaire committed R4670:4f17c4046cf6: corrected benchmarks plotting and evaluation methods (authored by tlemaire).
corrected benchmarks plotting and evaluation methods
Tue, Jun 8, 21:30

Mon, Jun 7

tlemaire committed R4670:5e1899de25b9: added special case handling for phi-key in DriveArray (authored by tlemaire).
added special case handling for phi-key in DriveArray
Mon, Jun 7, 23:54

Sun, Jun 6

tlemaire committed R4670:1e4c694a74a1: corrected sundt spike height criterion for detection (authored by tlemaire).
corrected sundt spike height criterion for detection
Sun, Jun 6, 15:36

Sat, Jun 5

tlemaire committed R4670:1a8775592b0c: modified sundt spike detection settings (authored by tlemaire).
modified sundt spike detection settings
Sat, Jun 5, 15:32

Thu, Jun 3

tlemaire committed R4670:a182936772ae: added subset argument to FiberBenchmark.runSimsOverAmplitudeSpace in order to… (authored by tlemaire).
added subset argument to FiberBenchmark.runSimsOverAmplitudeSpace in order to…
Thu, Jun 3, 10:52

Mon, May 31

tlemaire committed R4670:1ee42570341d: added benchmark nodecolors and periodicity line patterns (authored by tlemaire).
added benchmark nodecolors and periodicity line patterns
Mon, May 31, 18:19

Sun, May 30

tlemaire committed R4670:aa1ff7ae0ea8: corrected XYMap.addInsets to work with out or range insets (authored by tlemaire).
corrected XYMap.addInsets to work with out or range insets
Sun, May 30, 17:56

Fri, May 28

tlemaire committed R4670:0a593ebe88fb: updated pandas requirements (now >=1.2.4) to ensure TimeSeries object are… (authored by tlemaire).
updated pandas requirements (now >=1.2.4) to ensure TimeSeries object are…
Fri, May 28, 17:03
tlemaire committed R4670:aa3b06ccb8aa: added new passive lookups at 20kHz and 4MHz (authored by tlemaire).
added new passive lookups at 20kHz and 4MHz
Fri, May 28, 15:40
tlemaire committed R4670:da9013ba10c1: corrected indent error in run_lookups (authored by tlemaire).
corrected indent error in run_lookups
Fri, May 28, 13:42
tlemaire committed R4670:3dd0e7ca4b5c: added pneuron.is_passive property and getDefaultPassiveNeuron function (authored by tlemaire).
added pneuron.is_passive property and getDefaultPassiveNeuron function
Fri, May 28, 13:41
tlemaire committed R4670:b608770eae52: adapted parser for passive lookups (authored by tlemaire).
adapted parser for passive lookups
Fri, May 28, 12:56

Thu, May 27

tlemaire committed R4670:47f7640b7bcb: added factor to Qnorm pltvar. (authored by tlemaire).
added factor to Qnorm pltvar.
Thu, May 27, 20:49
tlemaire committed R4670:bf6c2c1e96e5: untracked sublime-project file (authored by tlemaire).
untracked sublime-project file
Thu, May 27, 18:19
tlemaire committed R4670:143fbd37ca59: added special case handling to find lookups name (authored by tlemaire).
added special case handling to find lookups name
Thu, May 27, 09:22

Wed, May 26

tlemaire committed R4670:417a3bd45505: replaced computeDiffAreaUnderCurve by computeMeanNormDifference (more robust… (authored by tlemaire).
replaced computeDiffAreaUnderCurve by computeMeanNormDifference (more robust…
Wed, May 26, 18:56
tlemaire committed R4670:87ed4cd909be: corrected nan values handling in XYMap. (authored by tlemaire).
corrected nan values handling in XYMap.
Wed, May 26, 16:33
tlemaire committed R4670:fde48404e155: improved FiberBenchmark (authored by tlemaire).
improved FiberBenchmark
Wed, May 26, 13:45
tlemaire committed R4670:02b5fdf9949f: added new divmaps module. (authored by tlemaire).
added new divmaps module.
Wed, May 26, 13:45

Tue, May 25

tlemaire committed R4670:a4d16de1fb6a: added divergence computation methods to benchmarks (authored by tlemaire).
added divergence computation methods to benchmarks
Tue, May 25, 21:09
tlemaire committed R4670:c187b85f3573: improved naming, access and iterating of DriveArray objects. (authored by tlemaire).
improved naming, access and iterating of DriveArray objects.
Tue, May 25, 15:19

Thu, May 20

tlemaire committed R4670:b4ccaf49772d: modified xscale in benchmark 2D plot (authored by tlemaire).
modified xscale in benchmark 2D plot
Thu, May 20, 11:20

Wed, May 19

tlemaire committed R4670:41fde2c39385: modified coupled_nbls.simAndSave to just simulate if no output directory is… (authored by tlemaire).
modified coupled_nbls.simAndSave to just simulate if no output directory is…
Wed, May 19, 22:07
tlemaire committed R4670:f4282fb16d90: added plot utility functions (authored by tlemaire).
added plot utility functions
Wed, May 19, 16:56
tlemaire committed R4670:35b4216f3b21: added option to initialize passive neuron from name code. added initFromMeta… (authored by tlemaire).
added option to initialize passive neuron from name code. added initFromMeta…
Wed, May 19, 16:56
tlemaire committed R4670:06fa67d560c2: added resample and interpolate methods to spatiallyextendedtimeseries class (authored by tlemaire).
added resample and interpolate methods to spatiallyextendedtimeseries class
Wed, May 19, 11:26
tlemaire committed R4670:40ac2cbf792f: added workaround solution for passive generic lookup name (authored by tlemaire).
added workaround solution for passive generic lookup name
Wed, May 19, 11:26

May 18 2021

tlemaire committed R4670:3d60eae04053: added dump and dumpOutputsOtherThan methods to TimeSeries classes (authored by tlemaire).
added dump and dumpOutputsOtherThan methods to TimeSeries classes
May 18 2021, 14:26

May 17 2021

tlemaire committed R4670:66afa784ef55: added half-cycle offset and interpolation in timeseries cycle averaging (authored by tlemaire).
added half-cycle offset and interpolation in timeseries cycle averaging
May 17 2021, 22:21
tlemaire committed R4670:a855f3b52095: fixed error in run_lookups (inconsistent redimensioning for test case) (authored by tlemaire).
fixed error in run_lookups (inconsistent redimensioning for test case)
May 17 2021, 21:20
tlemaire committed R4670:575ad8b758ee: clarified terms in gamma functions (authored by tlemaire).
clarified terms in gamma functions
May 17 2021, 20:53
tlemaire committed R4670:9b83a80b55f5: started implementing gamma evaluation method (authored by tlemaire).
started implementing gamma evaluation method
May 17 2021, 20:26

May 15 2021

tlemaire committed R4670:23adeab812fd: started working on coupled_nbls module (authored by tlemaire).
started working on coupled_nbls module
May 15 2021, 20:47

May 14 2021

tlemaire committed R4670:6aadfe75ac22: started working on coupled_nbls module (authored by tlemaire).
started working on coupled_nbls module
May 14 2021, 19:51

May 11 2021

tlemaire committed R4670:4ca2ae140d75: added test_Qovertones.py test script (authored by tlemaire).
added test_Qovertones.py test script
May 11 2021, 11:03

Apr 13 2021

tlemaire committed R4670:5a9cf900fc2b: added context to README (authored by tlemaire).
added context to README
Apr 13 2021, 18:05

Mar 26 2021

tlemaire committed R4670:5159d5ca1d87: improved logging in nbls.computeEffVars (authored by tlemaire).
improved logging in nbls.computeEffVars
Mar 26 2021, 20:13
tlemaire committed R4670:f23057d86a6e: improved error logging in bls.balancedefQS. (authored by tlemaire).
improved error logging in bls.balancedefQS.
Mar 26 2021, 20:05

Mar 23 2021

tlemaire committed R4670:b4233b34e678: improved lookup naming system (and renamed all lookups accordingly). (authored by tlemaire).
improved lookup naming system (and renamed all lookups accordingly).
Mar 23 2021, 21:37
tlemaire committed R4670:7d732f9d2c25: adapted nbls.computeEffVars method to accomodate for Fourier Fourier overtones… (authored by tlemaire).
adapted nbls.computeEffVars method to accomodate for Fourier Fourier overtones…
Mar 23 2021, 19:10
tlemaire committed R4670:e7842427f677: added array-typed charge input (i.e. US-periodic profile) option to… (authored by tlemaire).
added array-typed charge input (i.e. US-periodic profile) option to…
Mar 23 2021, 13:47

Mar 18 2021

tlemaire committed R4670:215b15082b72: small corrections in demo notebook (authored by tlemaire).
small corrections in demo notebook
Mar 18 2021, 15:01

Mar 16 2021

tlemaire committed R4670:1b7cf6045963: updated setup file. corrected some imports in notebooks (AcousticSource ->… (authored by tlemaire).
updated setup file. corrected some imports in notebooks (AcousticSource ->…
Mar 16 2021, 18:32

Mar 5 2021

tlemaire committed R4670:cbeb67523b66: corrected Cm lkp extension (authored by tlemaire).
corrected Cm lkp extension
Mar 5 2021, 13:37

Mar 3 2021

tlemaire committed R4670:0df71d46a8b6: added emphasis on git-lfs requirement in REAMDE. (authored by tlemaire).
added emphasis on git-lfs requirement in REAMDE.
Mar 3 2021, 15:50

Mar 2 2021

tlemaire committed R4670:28b9ed25d674: added transition handling in computeTimeStep. (authored by tlemaire).
added transition handling in computeTimeStep.
Mar 2 2021, 15:03

Feb 11 2021

tlemaire committed R4670:573f1807c8e3: updated pandas requirements in setup.py (authored by tlemaire).
updated pandas requirements in setup.py
Feb 11 2021, 12:42
tlemaire committed R4670:35b0a5fef28a: added stimProfile and plot methods to TimeProtocol class (authored by tlemaire).
added stimProfile and plot methods to TimeProtocol class
Feb 11 2021, 12:36

Nov 2 2020

tlemaire committed R4670:5f4e38528e1a: new bls lookups (authored by tlemaire).
new bls lookups
Nov 2 2020, 12:10

Sep 30 2020

tlemaire committed R4670:9b2552960a06: added getPulseTrainProtocol function (authored by tlemaire).
added getPulseTrainProtocol function
Sep 30 2020, 22:35
tlemaire committed R4670:405697583757: adjusted benchmark classes (authored by tlemaire).
adjusted benchmark classes
Sep 30 2020, 19:29

Sep 25 2020

tlemaire committed R4670:b89adb5fba58: added SonicBenchmark.phaseplotQnorm method (authored by tlemaire).
added SonicBenchmark.phaseplotQnorm method
Sep 25 2020, 19:54
tlemaire committed R4670:3e45a355b863: removed OldDriveDivergenceMap, added GammaDivergenceMap (authored by tlemaire).
removed OldDriveDivergenceMap, added GammaDivergenceMap
Sep 25 2020, 14:43
tlemaire committed R4670:6b0629b0479c: resolved numerical errors on multicomp benchmark (npc = 100, atol = 1e-10) (authored by tlemaire).
resolved numerical errors on multicomp benchmark (npc = 100, atol = 1e-10)
Sep 25 2020, 13:10

Sep 24 2020

tlemaire committed R4670:6aa3e623b782: added multicomp module (authored by tlemaire).
added multicomp module
Sep 24 2020, 20:50
tlemaire committed R4670:190d52832d89: added multicomp_benchmark module (cleaned-up version). (authored by tlemaire).
added multicomp_benchmark module (cleaned-up version).
Sep 24 2020, 18:45
tlemaire committed R4670:3f27342d2675: corrected gamma map (authored by tlemaire).
corrected gamma map
Sep 24 2020, 18:45

Sep 23 2020

tlemaire committed R4670:fe5b0a532e32: added plot_Zprofiles.py script (authored by tlemaire).
added plot_Zprofiles.py script
Sep 23 2020, 12:36

Sep 15 2020

tlemaire committed R4670:bb9f2c79c74a: latest changes for morphoSONIC paper (authored by tlemaire).
latest changes for morphoSONIC paper
Sep 15 2020, 12:24

Aug 8 2020

tlemaire committed R4670:e54883c44689: added Lookup.reduce method to compute bls gamma_lkp on-the-fly (removed… (authored by tlemaire).
added Lookup.reduce method to compute bls gamma_lkp on-the-fly (removed…
Aug 8 2020, 16:38
tlemaire committed R4670:a3951dd16d9c: added postpro.filtfilt function and plot_Cm_filtering script (authored by tlemaire).
added postpro.filtfilt function and plot_Cm_filtering script
Aug 8 2020, 15:49

Aug 6 2020

tlemaire committed R4670:0526b07ebff9: added mirrorProp and mirrorAxis functions to pltutils. (authored by tlemaire).
added mirrorProp and mirrorAxis functions to pltutils.
Aug 6 2020, 17:56

Aug 5 2020

tlemaire committed R4670:aa8497513a7a: corrected error in bls.logRelGap. Re-computed Cm_lkp (authored by tlemaire).
corrected error in bls.logRelGap. Re-computed Cm_lkp
Aug 5 2020, 21:25
tlemaire committed R4670:e57b064d8f70: simplified bls.capacitance expresion (authored by tlemaire).
simplified bls.capacitance expresion
Aug 5 2020, 20:43
tlemaire committed R4670:bf832e749cbd: added FHnode fs lookup at 36 celsius. (authored by tlemaire).
added FHnode fs lookup at 36 celsius.
Aug 5 2020, 11:23

Aug 4 2020

tlemaire committed R4670:ed71c4613b28: replaced nbls NEURONS_LOOKUP_DIR by a more general LOOKUP_DIR defined in utils (authored by tlemaire).
replaced nbls NEURONS_LOOKUP_DIR by a more general LOOKUP_DIR defined in utils
Aug 4 2020, 17:57
tlemaire committed R4670:d5c62320c0e3: added expandRange docstring (authored by tlemaire).
added expandRange docstring
Aug 4 2020, 17:57

Aug 3 2020

tlemaire committed R4670:52e16ec74047: added nmin parameter to PeriodicSolver.solve and BilayerSonophore.simCycles. (authored by tlemaire).
added nmin parameter to PeriodicSolver.solve and BilayerSonophore.simCycles.
Aug 3 2020, 23:14
tlemaire committed R4670:1c0831f723b0: added tau_pas plotting to plotGatingKinetics (authored by tlemaire).
added tau_pas plotting to plotGatingKinetics
Aug 3 2020, 23:14

Jul 23 2020

tlemaire committed R4670:ac56c3baa94e: cleaned up BilayerSonophore.getPltVars (authored by tlemaire).
cleaned up BilayerSonophore.getPltVars
Jul 23 2020, 11:17

Jul 22 2020

tlemaire committed R4670:aaeaaeac3732: removed call to unstable iax in pltvars['iax'] definition (authored by tlemaire).
removed call to unstable iax in pltvars['iax'] definition
Jul 22 2020, 16:45
tlemaire committed R4670:0d4af61c20f7: corrected PointNeuron dQdt method (now calculating charge derviative by finite… (authored by tlemaire).
corrected PointNeuron dQdt method (now calculating charge derviative by finite…
Jul 22 2020, 11:02

Jul 21 2020

tlemaire committed R4670:d4364da996c8: added symmetric colormaps and corrected ComparativePlot cbar levels for int… (authored by tlemaire).
added symmetric colormaps and corrected ComparativePlot cbar levels for int…
Jul 21 2020, 22:13
tlemaire committed R4670:fd4b6531e872: specified logger handler stream to sys.stdout to avoid red background in… (authored by tlemaire).
specified logger handler stream to sys.stdout to avoid red background in…
Jul 21 2020, 20:04
tlemaire committed R4670:4884f5695b3e: added HH point neuron (authored by tlemaire).
added HH point neuron
Jul 21 2020, 16:19
tlemaire committed R4670:42a3be29b47b: introduced default celsius (36°C) as a PointNeuron property shared by all… (authored by tlemaire).
introduced default celsius (36°C) as a PointNeuron property shared by all…
Jul 21 2020, 16:19
tlemaire committed R4670:133be2f739dd: added celsius parameter (36.0) to cortical and thalamic neurons. (authored by tlemaire).
added celsius parameter (36.0) to cortical and thalamic neurons.
Jul 21 2020, 16:19
tlemaire committed R4670:de400ab21db3: corrected gaussian formula so that sigma matches definition of standard… (authored by tlemaire).
corrected gaussian formula so that sigma matches definition of standard…
Jul 21 2020, 16:19

Jul 15 2020

tlemaire committed R4670:c9894bdbd61c: removed SilentMRGNode class (now generated on-the-fly in analysis notebook) (authored by tlemaire).
removed SilentMRGNode class (now generated on-the-fly in analysis notebook)
Jul 15 2020, 21:24
tlemaire committed R4670:a8ba89d095f5: implemented passiveNeuron wrapper function to generate PassiveNeuron class… (authored by tlemaire).
implemented passiveNeuron wrapper function to generate PassiveNeuron class…
Jul 15 2020, 12:18
tlemaire committed R4670:095a41517e86: added pneuron.tau_pas property (authored by tlemaire).
added pneuron.tau_pas property
Jul 15 2020, 10:42
tlemaire committed R4670:3998f71a5a6f: added LogBatch getSerlializedOutput and getEntryOutput methods. (authored by tlemaire).
added LogBatch getSerlializedOutput and getEntryOutput methods.
Jul 15 2020, 10:42

Jun 26 2020

tlemaire committed R4670:66f49d8e6545: added log scale option for tau axis in plotGatingStates (authored by tlemaire).
added log scale option for tau axis in plotGatingStates
Jun 26 2020, 17:39

Jun 24 2020

tlemaire committed R4670:4b2fc8c0eea5: added pairwise utils function. added GroupedTimeSeries.shareX static method. (authored by tlemaire).
added pairwise utils function. added GroupedTimeSeries.shareX static method.
Jun 24 2020, 11:05

Jun 4 2020

tlemaire committed R4670:64ec46ae1392: corrected Lookup and TimeSeries division operators. (authored by tlemaire).
corrected Lookup and TimeSeries division operators.
Jun 4 2020, 22:07