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tlemaire (Théo Lemaire)

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User Details

User Since
Aug 21 2017, 12:19 (149 w, 4 d)
Availability
Available
Organization
epfl.ch (university)

Recent Activity

Fri, Jun 26

tlemaire committed R4670:66f49d8e6545: added log scale option for tau axis in plotGatingStates (authored by tlemaire).
added log scale option for tau axis in plotGatingStates
Fri, Jun 26, 17:39

Wed, Jun 24

tlemaire committed R4670:4b2fc8c0eea5: added pairwise utils function. added GroupedTimeSeries.shareX static method. (authored by tlemaire).
added pairwise utils function. added GroupedTimeSeries.shareX static method.
Wed, Jun 24, 11:05

Thu, Jun 4

tlemaire committed R4670:64ec46ae1392: corrected Lookup and TimeSeries division operators. (authored by tlemaire).
corrected Lookup and TimeSeries division operators.
Thu, Jun 4, 22:07
tlemaire committed R4670:bebce73d9405: updated MANIFEST file. (authored by tlemaire).
updated MANIFEST file.
Thu, Jun 4, 22:07

May 18 2020

tlemaire committed R4670:ef08cb208ad1: updated README. (authored by tlemaire).
updated README.
May 18 2020, 15:23

May 7 2020

tlemaire committed R4670:0c7bff925bd5: corrected index offset error in GenericPlot.addCmap (authored by tlemaire).
corrected index offset error in GenericPlot.addCmap
May 7 2020, 16:20
tlemaire committed R4670:bbb3a4445235: added strictbounds plotting options (authored by tlemaire).
added strictbounds plotting options
May 7 2020, 16:20

May 4 2020

tlemaire committed R4670:2c0253a46427: added extractCommonPrefix utils function. (authored by tlemaire).
added extractCommonPrefix utils function.
May 4 2020, 12:35

May 2 2020

tlemaire committed R4670:9b03fd5152c2: corrected DrivenNeuronalBilayerSonophore.inputs (authored by tlemaire).
corrected DrivenNeuronalBilayerSonophore.inputs
May 2 2020, 17:17
tlemaire committed R4670:e1f537dcc076: corrected error in solve_ivp call. (authored by tlemaire).
corrected error in solve_ivp call.
May 2 2020, 17:11
tlemaire committed R4670:db1a0c16e84b: added actmap NaN data post-processing to prevent numpy warning when using log z… (authored by tlemaire).
added actmap NaN data post-processing to prevent numpy warning when using log z…
May 2 2020, 14:52
tlemaire committed R4670:430d7c8131f0: new astim titrations for figure 8 (authored by tlemaire).
new astim titrations for figure 8
May 2 2020, 12:08

May 1 2020

tlemaire committed R4670:6d2bc897725d: Merge branch 'master' of https://c4science.ch/diffusion/4670/pysonic (authored by tlemaire).
Merge branch 'master' of https://c4science.ch/diffusion/4670/pysonic
May 1 2020, 22:48
tlemaire committed R4670:c8cdcf5deefc: added new titrations (authored by tlemaire).
added new titrations
May 1 2020, 22:48
tlemaire committed R4670:bd7a6ec5a477: corrected ComparativePlot and CompTimeSeries to enable taking generators as… (authored by tlemaire).
corrected ComparativePlot and CompTimeSeries to enable taking generators as…
May 1 2020, 22:45
tlemaire committed R4670:5742df202a16: new figure 7 titrations for high PRF low DC (authored by tlemaire).
new figure 7 titrations for high PRF low DC
May 1 2020, 20:25
tlemaire committed R4670:fa9c541d7842: applied correction to ODESolver.getNsamples to make sure there are at least 2… (authored by tlemaire).
applied correction to ODESolver.getNsamples to make sure there are at least 2…
May 1 2020, 19:28
tlemaire committed R4670:28d338972b7c: new figure 7 titrations (authored by tlemaire).
new figure 7 titrations
May 1 2020, 18:37

Apr 30 2020

tlemaire committed R4670:74c7618b792a: added new astim titrations (authored by tlemaire).
added new astim titrations
Apr 30 2020, 16:46
tlemaire committed R4670:835803fa8d6b: added progress bar logging to nbls.simFull at INFO level. (authored by tlemaire).
added progress bar logging to nbls.simFull at INFO level.
Apr 30 2020, 13:27

Apr 29 2020

tlemaire committed R4670:4e922dc3531c: corrected scaling factor in actmap.addThresholdCurve (authored by tlemaire).
corrected scaling factor in actmap.addThresholdCurve
Apr 29 2020, 22:56
tlemaire committed R4670:524072855745: defined Thresholder class for a clearer threshold search implementation. (authored by tlemaire).
defined Thresholder class for a clearer threshold search implementation.
Apr 29 2020, 22:56
tlemaire committed R4670:1dd1b969d0e2: added RS 10Hz titrations. (authored by tlemaire).
added RS 10Hz titrations.
Apr 29 2020, 17:58
tlemaire committed R4670:efb7e6effc92: corrected queue error in actmap.addTresholdCurve (authored by tlemaire).
corrected queue error in actmap.addTresholdCurve
Apr 29 2020, 17:09
tlemaire committed R4670:0a9b43830b05: corrected DC scaling in actmap.addThresholdCurve (authored by tlemaire).
corrected DC scaling in actmap.addThresholdCurve
Apr 29 2020, 16:23
tlemaire committed R4670:d4087b3210f3: added mpi feature to actmap threshold curve. (authored by tlemaire).
added mpi feature to actmap threshold curve.
Apr 29 2020, 16:18
tlemaire committed R4670:81fe27f05196: changed bls.inputs['a'] (factor 0, unit m). (authored by tlemaire).
changed bls.inputs['a'] (factor 0, unit m).
Apr 29 2020, 12:36

Apr 28 2020

tlemaire committed R4670:fcb5a387a33e: added input-ouput match pre-check in LogBatch.run method to avoid unnecessary… (authored by tlemaire).
added input-ouput match pre-check in LogBatch.run method to avoid unnecessary…
Apr 28 2020, 21:21

Apr 26 2020

tlemaire committed R4670:2eb3a3768e1e: modified BurstProtocol default BRF such that BRI is twice burst time. (authored by tlemaire).
modified BurstProtocol default BRF such that BRI is twice burst time.
Apr 26 2020, 19:22
tlemaire committed R4670:fab05bc88fea: corrected simobj.check methods (incorrect paramStr call). added BRF pre-check… (authored by tlemaire).
corrected simobj.check methods (incorrect paramStr call). added BRF pre-check…
Apr 26 2020, 19:10

Apr 24 2020

tlemaire committed R4670:20183f45302e: added baseline_modulation example script (authored by tlemaire).
added baseline_modulation example script
Apr 24 2020, 11:23
tlemaire committed R4670:6dedc53ccbc8: added optional tstart argument to PusledProtocol classes. corrected… (authored by tlemaire).
added optional tstart argument to PusledProtocol classes. corrected…
Apr 24 2020, 11:04

Apr 23 2020

tlemaire committed R4670:5b268a756bc5: added TCtweak70 and TCtweak50 cases. (authored by tlemaire).
added TCtweak70 and TCtweak50 cases.
Apr 23 2020, 12:43
tlemaire committed R4670:a6e6abff99bc: added TC2 class (authored by tlemaire).
added TC2 class
Apr 23 2020, 12:43
tlemaire committed R4670:93d5100bbbce: introduced lambda function for test.execute calls (authored by tlemaire).
introduced lambda function for test.execute calls
Apr 23 2020, 12:43

Apr 22 2020

tlemaire committed R4670:9342c4bfcbda: additional bls lookups (authored by tlemaire).
additional bls lookups
Apr 22 2020, 12:57

Apr 21 2020

tlemaire committed R4670:7f1709df1d92: defined friendlyLogspace function (authored by tlemaire).
defined friendlyLogspace function
Apr 21 2020, 21:02
tlemaire committed R4670:67531a20cdce: placed StimObject class in a separate stimobj module. added boltons dependency… (authored by tlemaire).
placed StimObject class in a separate stimobj module. added boltons dependency…
Apr 21 2020, 21:02

Apr 19 2020

tlemaire committed R4670:2a0fec5672f0: added TC lookup 80 nm 590 kHz (authored by tlemaire).
added TC lookup 80 nm 590 kHz
Apr 19 2020, 16:41
tlemaire committed R4670:b7a48187478a: added few utils functions (authored by tlemaire).
added few utils functions
Apr 19 2020, 16:38
tlemaire committed R4670:159f140dcfb0: added BalancedPulsedProtocol class. (authored by tlemaire).
added BalancedPulsedProtocol class.
Apr 19 2020, 16:38
tlemaire committed R4670:7fdbe8544e52: added 48 nm TC lookups (authored by tlemaire).
added 48 nm TC lookups
Apr 19 2020, 11:54

Apr 18 2020

tlemaire committed R4670:108548aa8cc8: added max_nsamples parameter to effective solver to avoid memory allocation… (authored by tlemaire).
added max_nsamples parameter to effective solver to avoid memory allocation…
Apr 18 2020, 21:26
tlemaire committed R4670:a72a071b87d0: added more TC lookups. (authored by tlemaire).
added more TC lookups.
Apr 18 2020, 21:04
tlemaire committed R4670:72c8577885a8: corrected units discrepancy in actmap.py (authored by tlemaire).
corrected units discrepancy in actmap.py
Apr 18 2020, 21:01
tlemaire committed R4670:a3ca81f69d0a: corrected TimSeries.getStimPulses function (no patches for zero states). (authored by tlemaire).
corrected TimSeries.getStimPulses function (no patches for zero states).
Apr 18 2020, 16:15
tlemaire committed R4670:83d7d8df16fa: updated README (authored by tlemaire).
updated README
Apr 18 2020, 15:52
tlemaire committed R4670:00f6aa560a10: defined protocols copy methods. (authored by tlemaire).
defined protocols copy methods.
Apr 18 2020, 15:11
tlemaire committed R4670:0d1777407add: corrected drives and protocols inputs. (authored by tlemaire).
corrected drives and protocols inputs.
Apr 18 2020, 13:23

Apr 17 2020

tlemaire committed R4670:241946f34fa2: simplified drives and protocols (authored by tlemaire).
simplified drives and protocols
Apr 17 2020, 23:28
tlemaire committed R4670:5e4003f785f9: updated inputs precision in protocols (authored by tlemaire).
updated inputs precision in protocols
Apr 17 2020, 20:49
tlemaire committed R4670:b80a24a22518: updated README (authored by tlemaire).
updated README
Apr 17 2020, 20:46
tlemaire committed R4670:5fe7fba7ad8c: cleand-up run_astim.py (authored by tlemaire).
cleand-up run_astim.py
Apr 17 2020, 20:25
tlemaire committed R4670:420b1c0ceb3e: added 64nm 590 kHz fs-dependent TC lookup (authored by tlemaire).
added 64nm 590 kHz fs-dependent TC lookup
Apr 17 2020, 20:19
tlemaire committed R4670:e3ca275ebe0f: harmonized repr, desc and filecodes methods across protocols. (authored by tlemaire).
harmonized repr, desc and filecodes methods across protocols.
Apr 17 2020, 20:16
tlemaire committed R4670:6895a19a147f: implemented simQueueBurst method in pneuron and nbls classes. (authored by tlemaire).
implemented simQueueBurst method in pneuron and nbls classes.
Apr 17 2020, 20:16
tlemaire committed R4670:e62423f9469d: added update interval argument to HybridSolve.solve method. (authored by tlemaire).
added update interval argument to HybridSolve.solve method.
Apr 17 2020, 15:27
tlemaire committed R4670:e775528e1afc: cleaned-up find_tpeaks function (authored by tlemaire).
cleaned-up find_tpeaks function
Apr 17 2020, 15:27
tlemaire committed R4670:447a9236fa20: corrected error in computeFRProfile when no spikes are detected. (authored by tlemaire).
corrected error in computeFRProfile when no spikes are detected.
Apr 17 2020, 14:53

Apr 16 2020

tlemaire committed R4670:69892d75c503: improved solvers docstrings and clarified their use in model classes. (authored by tlemaire).
improved solvers docstrings and clarified their use in model classes.
Apr 16 2020, 13:31

Apr 15 2020

tlemaire committed R4670:81c3d55cddff: added 2 MHz 32nm TC lookup. (authored by tlemaire).
added 2 MHz 32nm TC lookup.
Apr 15 2020, 21:10
tlemaire committed R4670:b77cd9e4eb12: implemented better solvers (now inside solvers module), including an… (authored by tlemaire).
implemented better solvers (now inside solvers module), including an…
Apr 15 2020, 21:04
tlemaire committed R4670:d03caf415e89: removed ambiguity around initialConditions methods to allow correct lookups… (authored by tlemaire).
removed ambiguity around initialConditions methods to allow correct lookups…
Apr 15 2020, 21:04

Apr 13 2020

tlemaire committed R4670:7ae0b7961ae4: added TC fs lookup at 1 MHz. (authored by tlemaire).
added TC fs lookup at 1 MHz.
Apr 13 2020, 18:32
tlemaire committed R4670:b44cc93c9915: replaced "Ascale" parsing options by "yscale" for more clarity. (authored by tlemaire).
replaced "Ascale" parsing options by "yscale" for more clarity.
Apr 13 2020, 18:18
tlemaire committed R4670:f8511250c9b8: corrected LogBatch class to enable correct use with mpi. (authored by tlemaire).
corrected LogBatch class to enable correct use with mpi.
Apr 13 2020, 18:00
tlemaire committed R4670:10270ea94712: added better fs handling in actmap (authored by tlemaire).
added better fs handling in actmap
Apr 13 2020, 12:37

Apr 10 2020

tlemaire committed R4670:a8ffc4cf6311: removed useless error instance catch in utils (authored by tlemaire).
removed useless error instance catch in utils
Apr 10 2020, 18:36

Apr 9 2020

tlemaire committed R4670:077023563760: added example actmap script (authored by tlemaire).
added example actmap script
Apr 9 2020, 16:19
tlemaire committed R4670:4907be82d296: changed default actmap tstim from 1s to 200 ms (authored by tlemaire).
changed default actmap tstim from 1s to 200 ms
Apr 9 2020, 16:13
tlemaire committed R4670:3af9c9df32cc: added multiprocessing functionality to LogBatch class. (authored by tlemaire).
added multiprocessing functionality to LogBatch class.
Apr 9 2020, 15:53
tlemaire committed R4670:18480eb7bebc: corrected ActMap class (now inheriting from LogBatch). (authored by tlemaire).
corrected ActMap class (now inheriting from LogBatch).
Apr 9 2020, 14:07

Apr 5 2020

tlemaire committed R4670:63ef9868bbd2: added TimeProtocol.stimEvents method (used in NEURON simulations). (authored by tlemaire).
added TimeProtocol.stimEvents method (used in NEURON simulations).
Apr 5 2020, 17:59
tlemaire committed R4670:06f8250793a6: added eventsON and eventsOFF methods to Protocol classes. (authored by tlemaire).
added eventsON and eventsOFF methods to Protocol classes.
Apr 5 2020, 15:23

Apr 4 2020

tlemaire committed R4670:afdde67646ea: moved example scripts to examples folder and defined README.mdpp markdown… (authored by tlemaire).
moved example scripts to examples folder and defined README.mdpp markdown…
Apr 4 2020, 16:40

Apr 3 2020

tlemaire committed R4670:cc5348bc40ca: added __eq__ methods to pneuron and nbls classes (authored by tlemaire).
added __eq__ methods to pneuron and nbls classes
Apr 3 2020, 15:34

Mar 31 2020

tlemaire committed R4670:9239911c1f35: added ASTIM_REL_CONV_THR to constants file. (authored by tlemaire).
added ASTIM_REL_CONV_THR to constants file.
Mar 31 2020, 18:43

Mar 30 2020

tlemaire committed R4670:9dcd3884ae33: added TC fs lookup. (authored by tlemaire).
added TC fs lookup.
Mar 30 2020, 21:57
tlemaire committed R4670:4e96a816343e: added MRG fs lookup. (authored by tlemaire).
added MRG fs lookup.
Mar 30 2020, 13:24

Mar 27 2020

tlemaire committed R4670:8a68be82c2d8: added MRG lookup. (authored by tlemaire).
added MRG lookup.
Mar 27 2020, 20:42
tlemaire committed R4670:8f0bbde630a7: renamed fibers point-neuron models for better interpretability. completed fiber… (authored by tlemaire).
renamed fibers point-neuron models for better interpretability. completed fiber…
Mar 27 2020, 20:37

Mar 26 2020

tlemaire committed R4670:a43249c6ecf1: tested MRG lookups generation (authored by tlemaire).
tested MRG lookups generation
Mar 26 2020, 21:49
tlemaire committed R4670:a4eafd9f8059: corrected typo in SweeneyNode description. (authored by tlemaire).
corrected typo in SweeneyNode description.
Mar 26 2020, 21:16

Mar 24 2020

tlemaire committed R4670:cf163f8c94cb: added addExcitationInset to pltutils (authored by tlemaire).
added addExcitationInset to pltutils
Mar 24 2020, 15:51

Mar 23 2020

tlemaire committed R4670:678f3f5e229d: added getLogStartPoint to utils (authored by tlemaire).
added getLogStartPoint to utils
Mar 23 2020, 21:36

Mar 21 2020

tlemaire committed R4670:066e8e416305: added polyfit amd extrapolate capabilities to Lookup class. (authored by tlemaire).
added polyfit amd extrapolate capabilities to Lookup class.
Mar 21 2020, 18:51
tlemaire committed R4670:84694f9507f6: added x axis sharing in GroupedTimeSeries (authored by tlemaire).
added x axis sharing in GroupedTimeSeries
Mar 21 2020, 18:51

Feb 28 2020

tlemaire committed R4670:c8a9ea2beb92: added extra functionalities to Lookup class. continued fiber nodes notebook. (authored by tlemaire).
added extra functionalities to Lookup class. continued fiber nodes notebook.
Feb 28 2020, 17:05
tlemaire committed R4670:8f4b9911c0d3: Merge branch 'master' of https://c4science.ch/diffusion/4670/pysonic (authored by tlemaire).
Merge branch 'master' of https://c4science.ch/diffusion/4670/pysonic
Feb 28 2020, 17:05

Feb 27 2020

tlemaire committed R4670:edc36b1686d6: added fiber ndoes analysis notebook (authored by tlemaire).
added fiber ndoes analysis notebook
Feb 27 2020, 23:06
tlemaire committed R4670:a46f7227e040: added better handling of ybounds in timeseries. added MRG neuron class. (authored by tlemaire).
added better handling of ybounds in timeseries. added MRG neuron class.
Feb 27 2020, 23:02

Feb 20 2020

tlemaire committed R4670:165caa8bf488: moved getMeta to utils (authored by tlemaire).
moved getMeta to utils
Feb 20 2020, 18:35
tlemaire committed R4670:7f8a3be5ceb4: changed meta property of model classes to return solely model information. (authored by tlemaire).
changed meta property of model classes to return solely model information.
Feb 20 2020, 18:35

Feb 18 2020

tlemaire committed R4670:b7d520b9ed42: added LogBatch class (authored by tlemaire).
added LogBatch class
Feb 18 2020, 23:00
tlemaire committed R4670:b68fc5d800ef: added isPickable function. corrected install_requires list in setup file. (authored by tlemaire).
added isPickable function. corrected install_requires list in setup file.
Feb 18 2020, 13:54

Feb 14 2020

tlemaire committed R4670:683ec602313d: added gaussian function to utils. (authored by tlemaire).
added gaussian function to utils.
Feb 14 2020, 14:56
tlemaire committed R4670:31cc2d15993a: updated README (added instructions for git-lfs install) (authored by tlemaire).
updated README (added instructions for git-lfs install)
Feb 14 2020, 11:12
tlemaire committed R4670:68961385d17e: added copy method to all model classes. added TI US notebook. updated… (authored by tlemaire).
added copy method to all model classes. added TI US notebook. updated…
Feb 14 2020, 11:12

Feb 5 2020

tlemaire committed R4670:b62507055396: adapted simAndSave function to work also with source-based titration cases. (authored by tlemaire).
adapted simAndSave function to work also with source-based titration cases.
Feb 5 2020, 19:17
tlemaire committed R4670:478c17a7e098: changed erroneous calls to parseAmp to parseAmplitude in parsers module (authored by tlemaire).
changed erroneous calls to parseAmp to parseAmplitude in parsers module
Feb 5 2020, 19:17