conflicts with master resolved
2475508cefbe
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Authored by pundir on Oct 2 2019, 16:10.

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conflicts with master resolved

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Committed

pundir

Oct 2 2019, 16:10

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gitlab-richart

Jan 18 2021, 21:10

Parents

rAKA03ae00a232f9: added geometry utils to ease friciton calculation
rAKA0ef5d87d9034: Add 'test/ci/scripts/' from commit 'e20109b241d517abe8e2869216562914ee05aaf3'

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pundir committed rAKA2475508cefbe: conflicts with master resolved (authored by pundir).Oct 2 2019, 16:10

Merged Changes

This commit merges a very large number of changes. Only the first 50 are shown.

Commit	Author	Details	Committed
0ef5d87d9034	richart	Add 'test/ci/scripts/' from commit 'e20109b241d517abe8e2869216562914ee05aaf3'	Sep 24 2019
b6a4af4f0f62	richart	splitting repositories	Sep 24 2019
e20109b241d5	richart	arclinting arclint.py	Sep 24 2019
5d294161d2fc	richart	cleaning usless files	Sep 24 2019
aaace74d37ac	richart	preparation to split hbm scripts in a different project	Sep 24 2019
9b0b8a6b22b2	richart	preparation to split hbm scripts in a different project	Sep 24 2019
f000ed9c0072	richart	Merge branch 'master' of c4science.ch:/diffusion/AKAPRIV/akantu-private	Sep 24 2019
07f320d9a304	frerot	added parser for junit in harbormaster ci scripts	Sep 23 2019
e28fc6cfa113	frerot	added parser for junit in harbormaster ci scripts	Sep 23 2019
c59021d18d8e	richart	bug in the interface	Sep 17 2019
60e435467a35	richart	Bug fix in exclusiveScan in sequential	Sep 17 2019
863d3f407e40	richart	cleaning the code	Sep 4 2019
f7fc640b45bc	richart	Do not compute shape derivatives on all type in onElementsAdded	Aug 27 2019
155d19a093b4	richart	linting to make jenkins happy again	Aug 27 2019
8fec248f8b4b	richart	missed the structural shape functions	Aug 27 2019
5a28b410980b	richart	Limiting the shape functions and integrator to one dimension	Aug 27 2019
3d0f16c20130	richart	modernizing the code	Aug 21 2019
69c31979d23a	richart	adding some debugging	Aug 21 2019
ed1ff98d1761	richart	Copying missing file	Aug 21 2019
0ece01843256	richart	Material selector test correction	Aug 21 2019
a58bd8d06aea	richart	bug fix in the profil construction	Aug 20 2019
912d812b730d	richart	Removing useless function + bug fix	Aug 20 2019
2efd36a3d807	richart	trying to compensate google breaking compatibility without change version…	Aug 14 2019
d5f9aba7e9d9	richart	Correcting python examples	Aug 14 2019
534c6752bee0	richart	adding types capabilities	Aug 14 2019
a55298ef88a1	richart	Correcting some stuff in the dumpers	Aug 14 2019
5f1fc7d7197c	richart	merge ?	Aug 14 2019
8fb402aea0a1	richart	Modified pybind11 to work also with 2.3	Aug 14 2019
8ec6afee0ae1	frerot	Merge branch 'master' of ssh://c4science.ch/diffusion/AKAPRIV/akantu-private	Aug 14 2019
c133939b4175	frerot	protected pybind tests if python interface is not activated	Aug 13 2019
7c4625ecd4a8	richart	made the getNbDataPerElem more generic	Aug 9 2019
31edf7c58312	richart	Make tests faster by not running the examples	Jul 23 2019
2e0de6f355e9	richart	Adding more options to ci	Jul 19 2019
66e096390ab1	richart	backward compatibility for pybind11 interface	Jul 19 2019
b2a2f97d97ac	richart	Correcting some examples	Jul 19 2019
cca380adb866	richart	run parallel examples with mpi	Jul 19 2019
7863d49f001b	richart	arc lint --everything	Jul 19 2019
fe2c711063a8	richart	arc lint --everything	Jul 19 2019
cb52825d7599	richart	Making examples testable (just running them nothing fancy)	Jul 19 2019
1e85232f7ebf	richart	adapt to latest changes	Jul 19 2019
10c49fba4670	richart	removed unused variables	Jul 19 2019
9b6b46814f0d	richart	Trying to figure out the checkout	Jul 19 2019
d6e9f68dd00a	richart	more synthax errors	Jul 18 2019
5e4f8ff24796	richart	Merge branch 'master' of c4science.ch:/diffusion/AKAPRIV/akantu-private	Jul 18 2019
ebea3132a246	richart	bug in synthax	Jul 18 2019
c2fe86fb4370	richart	Checkout proper commit	Jul 18 2019
ae029b2fda07	richart	skip default checkout	Jul 18 2019
2813b05096af	gallyamov	Merge branch 'master' of ssh://c4science.ch/diffusion/AKAPRIV/akantu-private	Jul 18 2019
be1354eb1f45	gallyamov	Remove ghost_type from energy computation	Jul 18 2019
04e324e17215	richart	Removing artifacts	Jul 18 2019

Changes (463)
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Very Large Commit

This commit is very large. Load each file individually.

				Path
	A			.flake8
	M			CMakeLists.txt
	M			Jenkinsfile
	M			cmake/AkantuExampleMacros.cmake
	M			cmake/AkantuMacros.cmake
	M			cmake/AkantuSimulationMacros.cmake
	M			cmake/AkantuTestsMacros.cmake
	M			cmake/Modules/FindGMSH.cmake
	M			cmake/libakantu/v3/printers.py
	M			doc/manual/manual-solidmechanicsmodel.tex
	M			examples/cohesive_element/cohesive_extrinsic/cohesive_extrinsic.cc
	M			examples/cohesive_element/cohesive_extrinsic_implicit/cohesive_extrinsic_implicit.cc
	M			examples/cohesive_element/cohesive_intrinsic/cohesive_intrinsic.cc
	M			examples/cohesive_element/cohesive_intrinsic/triangle.geo
	M			examples/explicit/explicit_dynamic.cc
	M			examples/heat_transfer/heat_transfer_static_2d.cc
	M			examples/implicit/implicit_dynamic.cc
	M			examples/io/dumper/CMakeLists.txt
	M			examples/io/dumper/dumpable_interface.cc
	M			examples/io/dumper/dumper_low_level.cc
	M			examples/new_material/local_material_damage.cc
	M			examples/new_material/local_material_damage.hh
	M			examples/new_material/local_material_damage_inline_impl.hh
	M			examples/new_material/viscoelastic_maxwell/material_viscoelastic_maxwell_energies.cc
	M			examples/parallel/CMakeLists.txt
	M			examples/python/CMakeLists.txt
	A			examples/python/cohesive/CMakeLists.txt
	M			examples/python/cohesive/plate.py
	M			examples/python/custom-material/CMakeLists.txt
	M			examples/python/custom-material/bi-material.py
	M			examples/python/custom-material/custom-material.py
	A			examples/python/dynamics/CMakeLists.txt
	M			examples/python/dynamics/dynamics.py
	A			examples/python/eigen_modes/CMakeLists.txt
	M			examples/python/eigen_modes/eigen_modes.py
	M			examples/python/eigen_modes/image_saver.py
	M			examples/python/plate-hole/CMakeLists.txt
	D			examples/python/plate-hole/plate-mpi.py
	M			examples/python/plate-hole/plate.py
	M			examples/python/stiffness_matrix/CMakeLists.txt
	M			examples/python/stiffness_matrix/plate.msh
	M			examples/python/stiffness_matrix/stiffness_matrix.py
	M			extra_packages/extra-materials/src/material_FE2/material_FE2.cc
	M			extra_packages/extra-materials/src/material_FE2/solid_mechanics_model_RVE.cc
	M			extra_packages/extra-materials/src/material_damage/material_brittle_inline_impl.cc
	M			extra_packages/extra-materials/src/material_damage/material_damage_iterative.cc
	M			extra_packages/extra-materials/src/material_damage/material_damage_iterative.hh
	M			extra_packages/extra-materials/src/material_damage/material_damage_iterative_inline_impl.cc
	M			extra_packages/extra-materials/src/material_damage/material_orthotropic_damage.hh
	M			extra_packages/extra-materials/src/material_damage/material_orthotropic_damage_iterative.cc
	M			extra_packages/extra-materials/src/material_damage/material_orthotropic_damage_iterative.hh
	M			extra_packages/extra-materials/src/material_damage/material_orthotropic_damage_tmpl.hh
	M			extra_packages/extra-materials/src/material_damage/material_vreepeerlings_inline_impl.cc
	M			extra_packages/extra-materials/src/material_plastic/material_viscoplastic.cc
	M			extra_packages/extra-materials/test/test_material_damage/test_material_damage_iterative_non_local_parallel.cc
	M			extra_packages/extra-materials/test/test_material_damage/test_material_damage_iterative_non_local_serial.cc
	M			extra_packages/igfem/src/element_class_igfem.hh
	M			extra_packages/igfem/src/igfem_enrichment.cc
	M			extra_packages/igfem/src/material_igfem/material_igfem_elastic.cc
	M			extra_packages/igfem/src/mesh_igfem_spherical_growing_gel_tmpl.hh
	M			extra_packages/igfem/test/patch_tests/test_igfem_triangle_4.cc
	M			extra_packages/igfem/test/patch_tests/test_igfem_triangle_5.cc
	M			extra_packages/igfem/test/patch_tests/test_interface_position.cc
	M			extra_packages/igfem/test/test_solid_mechanics_model_igfem/test_ASR_damage.cc
	M			extra_packages/igfem/test/test_solid_mechanics_model_igfem/test_material_igfem_iterative_stiffness_reduction.cc
	M			extra_packages/igfem/test/test_solid_mechanics_model_igfem/test_material_igfem_iterative_stiffness_reduction_damage_step_transfer.cc
	M			extra_packages/igfem/test/test_solid_mechanics_model_igfem/test_material_igfem_iterative_stiffness_reduction_parallel.cc
	M			extra_packages/igfem/test/test_solid_mechanics_model_igfem/test_solid_mechanics_model_igfem.cc
	M			extra_packages/traction-at-split-node-contact/src/boundary_conditions/force_based_dirichlet.hh
	M			extra_packages/traction-at-split-node-contact/src/common/synchronized_array.cc
	M			extra_packages/traction-at-split-node-contact/src/functions/boundary_functions.cc
	M			extra_packages/traction-at-split-node-contact/src/ntn_contact/friction_laws/ntn_friclaw_coulomb_tmpl.hh
	M			extra_packages/traction-at-split-node-contact/src/ntn_contact/friction_laws/ntn_friclaw_linear_cohesive_tmpl.hh
	M			extra_packages/traction-at-split-node-contact/src/ntn_contact/friction_laws/ntn_friclaw_linear_slip_weakening_no_healing_tmpl.hh
	M			extra_packages/traction-at-split-node-contact/src/ntn_contact/friction_laws/ntn_friclaw_linear_slip_weakening_tmpl.hh
	M			extra_packages/traction-at-split-node-contact/src/ntn_contact/friction_regularisations/ntn_fricreg_no_regularisation.cc
	M			extra_packages/traction-at-split-node-contact/src/ntn_contact/friction_regularisations/ntn_fricreg_rubin_ampuero.cc
	M			extra_packages/traction-at-split-node-contact/src/ntn_contact/friction_regularisations/ntn_fricreg_simplified_prakash_clifton.cc
	M			extra_packages/traction-at-split-node-contact/src/ntn_contact/friction_regularisations/ntn_fricreg_simplified_prakash_clifton.hh
	M			extra_packages/traction-at-split-node-contact/src/ntn_contact/mIIasym_contact.cc
	M			extra_packages/traction-at-split-node-contact/src/ntn_contact/ntn_base_contact.cc
	M			extra_packages/traction-at-split-node-contact/src/ntn_contact/ntn_base_contact.hh
	M			extra_packages/traction-at-split-node-contact/src/ntn_contact/ntn_base_friction.cc
	M			extra_packages/traction-at-split-node-contact/src/ntn_contact/ntn_base_friction.hh
	M			extra_packages/traction-at-split-node-contact/src/ntn_contact/ntn_contact.cc
	M			extra_packages/traction-at-split-node-contact/src/ntn_contact/ntn_initiation_function.hh
	M			packages/core.cmake
	M			packages/solid_mechanics.cmake
	M			python/CMakeLists.txt
	A			python/py11_akantu.cc
	M			python/py_aka_array.hh
	M			python/py_group_manager.cc
	M			python/py_material.cc
	M			python/py_model.cc
	M			src/common/aka_array.hh
	A			src/common/aka_array_printer.hh
	M			src/common/aka_array_tmpl.hh
	M			src/common/aka_bbox.hh
	M			src/common/aka_blas_lapack.hh
	M			src/common/aka_circular_array.hh
	M			src/common/aka_common.cc
	M			src/common/aka_common.hh
	M			src/common/aka_common_inline_impl.cc
	M			src/common/aka_csr.hh
	M			src/common/aka_element_classes_info_inline_impl.cc
	M			src/common/aka_error.cc
	M			src/common/aka_error.hh
	M			src/common/aka_grid_dynamic.hh
	M			src/common/aka_iterators.hh
	M			src/common/aka_math.cc
	M			src/common/aka_math.hh
	M			src/common/aka_math_tmpl.hh
	M			src/common/aka_memory.cc
	M			src/common/aka_memory.hh
	M			src/common/aka_random_generator.hh
	M			src/common/aka_safe_enum.hh
	M			src/common/aka_static_memory.cc
	M			src/common/aka_typelist.hh
	M			src/common/aka_types.hh
	M			src/common/aka_visitor.hh
	M			src/common/aka_voigthelper.cc
	M			src/common/aka_voigthelper.hh
	M			src/common/aka_voigthelper_tmpl.hh
	M			src/fe_engine/element.hh
	M			src/fe_engine/element_class.hh
	M			src/fe_engine/element_classes/element_class_hermite_inline_impl.cc
	M			src/fe_engine/element_classes/element_class_hexahedron_20_inline_impl.cc
	M			src/fe_engine/element_classes/element_class_kirchhoff_shell_inline_impl.cc
	M			src/fe_engine/element_classes/element_class_pentahedron_15_inline_impl.cc
	M			src/fe_engine/element_classes/element_class_pentahedron_6_inline_impl.cc
	M			src/fe_engine/element_classes/element_class_triangle_6_inline_impl.cc
	M			src/fe_engine/fe_engine.hh
	M			src/fe_engine/fe_engine_inline_impl.cc
	M			src/fe_engine/fe_engine_template_cohesive.cc
	M			src/fe_engine/fe_engine_template_tmpl.hh
	M			src/fe_engine/fe_engine_template_tmpl_field.hh
	M			src/fe_engine/fe_engine_template_tmpl_struct.hh
	M			src/fe_engine/gauss_integration_tmpl.hh
	M			src/fe_engine/geometrical_element_property.cc
	M			src/fe_engine/geometrical_element_property.hh
	M			src/fe_engine/integration_point.hh
	M			src/fe_engine/integrator.hh
	M			src/fe_engine/integrator_gauss.hh
	M			src/fe_engine/integrator_gauss_inline_impl.cc
	M			src/fe_engine/interpolation_element_tmpl.hh
	M			src/fe_engine/shape_cohesive.hh
	M			src/fe_engine/shape_cohesive_inline_impl.cc
	M			src/fe_engine/shape_functions.cc
	M			src/fe_engine/shape_functions.hh
	M			src/fe_engine/shape_lagrange.hh
	M			src/fe_engine/shape_lagrange_base.cc
	M			src/fe_engine/shape_lagrange_base.hh
	M			src/fe_engine/shape_lagrange_inline_impl.cc
	M			src/fe_engine/shape_structural.cc
	M			src/fe_engine/shape_structural.hh
	M			src/fe_engine/shape_structural_inline_impl.cc
	M			src/geometry/aabb_primitives/aabb_primitive.cc
	M			src/geometry/aabb_primitives/aabb_primitive.hh
	M			src/geometry/aabb_primitives/line_arc.hh
	M			src/geometry/aabb_primitives/tetrahedron.hh
	M			src/geometry/aabb_primitives/triangle.hh
	M			src/geometry/geom_helper_functions.hh
	M			src/geometry/mesh_abstract_intersector.hh
	M			src/geometry/mesh_abstract_intersector_tmpl.hh
	M			src/geometry/mesh_geom_abstract.hh
	M			src/geometry/mesh_geom_common.hh
	M			src/geometry/mesh_geom_factory.hh
	M			src/geometry/mesh_geom_factory_tmpl.hh
	M			src/geometry/mesh_geom_intersector.hh
	M			src/geometry/mesh_geom_intersector_tmpl.hh
	M			src/geometry/mesh_segment_intersector.hh
	M			src/geometry/mesh_sphere_intersector.hh
	M			src/geometry/mesh_sphere_intersector_tmpl.hh
	M			src/geometry/tree_type_helper.hh
	M			src/io/dumper/dumpable.cc
	M			src/io/dumper/dumpable_dummy.hh
	M			src/io/dumper/dumpable_inline_impl.hh
	M			src/io/dumper/dumpable_iohelper.hh
	M			src/io/dumper/dumper_compute.hh
	M			src/io/dumper/dumper_element_iterator.hh
	M			src/io/dumper/dumper_element_partition.hh
	M			src/io/dumper/dumper_elemental_field.hh
	M			src/io/dumper/dumper_filtered_connectivity.hh
	M			src/io/dumper/dumper_internal_material_field.hh
	M			src/io/dumper/dumper_iohelper.hh
	M			src/io/dumper/dumper_iohelper_paraview.hh
	M			src/io/dumper/dumper_material_padders.hh
	M			src/io/dumper/dumper_nodal_field.hh
	M			src/io/dumper/dumper_padding_helper.hh
	M			src/io/dumper/dumper_text.hh
	M			src/io/dumper/dumper_type_traits.hh
	M			src/io/mesh_io.cc
	M			src/io/mesh_io/mesh_io_diana.hh
	M			src/io/mesh_io/mesh_io_msh.cc
	M			src/io/mesh_io/mesh_io_msh_struct.cc
	M			src/io/mesh_io/mesh_io_msh_struct.hh
	M			src/io/parser/algebraic_parser.hh
	M			src/io/parser/cppargparse/cppargparse.cc
	M			src/io/parser/cppargparse/cppargparse_tmpl.hh
	M			src/io/parser/input_file_parser.hh
	M			src/io/parser/parameter_registry.cc
	M			src/io/parser/parameter_registry.hh
	M			src/io/parser/parsable.cc
	M			src/io/parser/parser.cc
	M			src/io/parser/parser.hh
	M			src/io/parser/parser_grammar_tmpl.hh
	M			src/io/parser/parser_input_files.cc
	M			src/io/parser/parser_real.cc
	M			src/io/parser/parser_tmpl.hh
	M			src/io/parser/parser_types.cc
	M			src/mesh/element_type_map.hh
	M			src/mesh/element_type_map_tmpl.hh
	M			src/mesh/group_manager.cc
	M			src/mesh/group_manager.hh
	M			src/mesh/mesh.cc
	M			src/mesh/mesh.hh
	M			src/mesh/mesh_accessor.hh
	M			src/mesh/mesh_data.hh
	M			src/mesh/mesh_data_tmpl.hh
	M			src/mesh/mesh_events.hh
	M			src/mesh/mesh_filter.hh
	M			src/mesh/mesh_global_data_updater.hh
	M			src/mesh/mesh_iterators.hh
	M			src/mesh/mesh_periodic.cc
	M			src/mesh/node_group.hh
	M			src/mesh/node_group_inline_impl.cc
	M			src/mesh_utils/cohesive_element_inserter.cc
	M			src/mesh_utils/cohesive_element_inserter.hh
	M			src/mesh_utils/cohesive_element_inserter_parallel.cc
	M			src/mesh_utils/global_ids_updater.cc
	M			src/mesh_utils/global_ids_updater.hh
	M			src/mesh_utils/mesh_partition.cc
	M			src/mesh_utils/mesh_partition.hh
	M			src/mesh_utils/mesh_partition/mesh_partition_mesh_data.hh
	M			src/mesh_utils/mesh_partition/mesh_partition_scotch.hh
	M			src/mesh_utils/mesh_utils.cc
	M			src/mesh_utils/mesh_utils.hh
	M			src/mesh_utils/mesh_utils_distribution.hh
	M			src/mesh_utils/mesh_utils_inline_impl.cc
	M			src/mesh_utils/mesh_utils_pbc.cc
	M			src/model/common/boundary_condition/boundary_condition.hh
	M			src/model/common/boundary_condition/boundary_condition_tmpl.hh
	M			src/model/common/dof_manager/dof_manager_default.cc
	M			src/model/common/dof_manager/dof_manager_default.hh
	M			src/model/common/dof_manager/dof_manager_default_inline_impl.cc
	M			src/model/common/dof_manager/dof_manager_petsc.hh
	M			src/model/common/integration_scheme/generalized_trapezoidal.cc
	M			src/model/common/integration_scheme/integration_scheme_1st_order.cc
	M			src/model/common/integration_scheme/integration_scheme_1st_order.hh
	M			src/model/common/integration_scheme/integration_scheme_2nd_order.cc
	M			src/model/common/integration_scheme/integration_scheme_2nd_order.hh
	M			src/model/common/integration_scheme/newmark-beta.cc
	M			src/model/common/integration_scheme/pseudo_time.cc
	M			src/model/common/model_solver.cc
	M			src/model/common/non_linear_solver/non_linear_solver.hh
	M			src/model/common/non_linear_solver/non_linear_solver_linear.cc
	M			src/model/common/non_linear_solver/non_linear_solver_linear.hh
	M			src/model/common/non_linear_solver/non_linear_solver_lumped.cc
	M			src/model/common/non_linear_solver/non_linear_solver_newton_raphson.hh
	M			src/model/common/non_linear_solver/non_linear_solver_petsc.cc
	P			src/model/common/non_linear_solver/non_linear_solver_petsc.hh Copied to src/model/solid_mechanics/materials/material_damage/material_anisotropic_damage.hh
	M			src/model/common/non_local_toolbox/base_weight_function_inline_impl.cc
	M			src/model/common/non_local_toolbox/neighborhoods_criterion_evaluation/neighborhood_max_criterion.hh
	M			src/model/common/non_local_toolbox/neighborhoods_criterion_evaluation/neighborhood_max_criterion_inline_impl.cc
	M			src/model/common/non_local_toolbox/non_local_manager.cc
	M			src/model/common/non_local_toolbox/non_local_neighborhood_base.cc
	M			src/model/common/solver_callback.hh
	M			src/model/common/time_step_solvers/time_step_solver_default_explicit.hh
	M			src/model/heat_transfer/heat_transfer_model.cc
	M			src/model/heat_transfer/heat_transfer_model.hh
	M			src/model/model_inline_impl.cc
	M			src/model/solid_mechanics/material.cc
	M			src/model/solid_mechanics/material.hh
	M			src/model/solid_mechanics/material_inline_impl.cc
	M			src/model/solid_mechanics/materials/internal_field.hh
	M			src/model/solid_mechanics/materials/internal_field_tmpl.hh
	A			src/model/solid_mechanics/materials/material_damage/material_anisotropic_damage.cc
	P			src/model/solid_mechanics/materials/material_damage/material_anisotropic_damage.hh Copied from src/model/common/non_linear_solver/non_linear_solver_petsc.hh
	A			src/model/solid_mechanics/materials/material_damage/material_anisotropic_damage_tmpl.hh
	M			src/model/solid_mechanics/materials/material_damage/material_damage.hh
	M			src/model/solid_mechanics/materials/material_damage/material_damage_tmpl.hh
	M			src/model/solid_mechanics/materials/material_damage/material_marigo.hh
	M			src/model/solid_mechanics/materials/material_damage/material_marigo_inline_impl.cc
	M			src/model/solid_mechanics/materials/material_damage/material_mazars_inline_impl.cc
	M			src/model/solid_mechanics/materials/material_elastic.cc
	M			src/model/solid_mechanics/materials/material_elastic.hh
	M			src/model/solid_mechanics/materials/material_elastic_inline_impl.cc
	M			src/model/solid_mechanics/materials/material_elastic_linear_anisotropic.cc
	M			src/model/solid_mechanics/materials/material_elastic_linear_anisotropic.hh
	M			src/model/solid_mechanics/materials/material_elastic_linear_anisotropic_inline_impl.cc
	M			src/model/solid_mechanics/materials/material_elastic_orthotropic.hh
	M			src/model/solid_mechanics/materials/material_embedded/material_reinforcement.hh
	M			src/model/solid_mechanics/materials/material_embedded/material_reinforcement_tmpl.hh
	M			src/model/solid_mechanics/materials/material_finite_deformation/material_neohookean.cc
	M			src/model/solid_mechanics/materials/material_plastic/material_linear_isotropic_hardening.cc
	M			src/model/solid_mechanics/materials/material_plastic/material_linear_isotropic_hardening.hh
	M			src/model/solid_mechanics/materials/material_plastic/material_linear_isotropic_hardening_inline_impl.cc
	M			src/model/solid_mechanics/materials/material_plastic/material_plastic_inline_impl.cc
	M			src/model/solid_mechanics/materials/material_thermal.cc
	M			src/model/solid_mechanics/materials/material_thermal.hh
	M			src/model/solid_mechanics/materials/material_viscoelastic/material_standard_linear_solid_deviatoric.cc
	M			src/model/solid_mechanics/materials/plane_stress_toolbox.hh
	M			src/model/solid_mechanics/materials/random_internal_field.hh
	M			src/model/solid_mechanics/materials/random_internal_field_tmpl.hh
	M			src/model/solid_mechanics/materials/weight_functions/remove_damaged_with_damage_rate_weight_function.hh
	M			src/model/solid_mechanics/materials/weight_functions/stress_based_weight_function.cc
	M			src/model/solid_mechanics/materials/weight_functions/stress_based_weight_function.hh
	M			src/model/solid_mechanics/solid_mechanics_model.cc
	M			src/model/solid_mechanics/solid_mechanics_model.hh
	M			src/model/solid_mechanics/solid_mechanics_model_cohesive/fragment_manager.cc
	M			src/model/solid_mechanics/solid_mechanics_model_cohesive/fragment_manager.hh
	M			src/model/solid_mechanics/solid_mechanics_model_cohesive/material_selector_cohesive.hh
	M			src/model/solid_mechanics/solid_mechanics_model_cohesive/materials/cohesive_internal_field.hh
	M			src/model/solid_mechanics/solid_mechanics_model_cohesive/materials/cohesive_internal_field_tmpl.hh
	M			src/model/solid_mechanics/solid_mechanics_model_cohesive/materials/constitutive_laws/material_cohesive_bilinear.hh
	M			src/model/solid_mechanics/solid_mechanics_model_cohesive/materials/constitutive_laws/material_cohesive_exponential.cc
	M			src/model/solid_mechanics/solid_mechanics_model_cohesive/materials/constitutive_laws/material_cohesive_exponential.hh
	M			src/model/solid_mechanics/solid_mechanics_model_cohesive/materials/constitutive_laws/material_cohesive_linear.cc
	M			src/model/solid_mechanics/solid_mechanics_model_cohesive/materials/constitutive_laws/material_cohesive_linear.hh
	M			src/model/solid_mechanics/solid_mechanics_model_cohesive/materials/constitutive_laws/material_cohesive_linear_fatigue.cc
	M			src/model/solid_mechanics/solid_mechanics_model_cohesive/materials/constitutive_laws/material_cohesive_linear_fatigue.hh
	M			src/model/solid_mechanics/solid_mechanics_model_cohesive/materials/constitutive_laws/material_cohesive_linear_friction.cc
	M			src/model/solid_mechanics/solid_mechanics_model_cohesive/materials/constitutive_laws/material_cohesive_linear_friction.hh
	M			src/model/solid_mechanics/solid_mechanics_model_cohesive/materials/constitutive_laws/material_cohesive_linear_inline_impl.cc
	M			src/model/solid_mechanics/solid_mechanics_model_cohesive/materials/constitutive_laws/material_cohesive_linear_uncoupled.cc
	M			src/model/solid_mechanics/solid_mechanics_model_cohesive/materials/constitutive_laws/material_cohesive_linear_uncoupled.hh
	M			src/model/solid_mechanics/solid_mechanics_model_cohesive/materials/material_cohesive.cc
	M			src/model/solid_mechanics/solid_mechanics_model_cohesive/materials/material_cohesive_inline_impl.cc
	M			src/model/solid_mechanics/solid_mechanics_model_cohesive/solid_mechanics_model_cohesive.cc
	M			src/model/solid_mechanics/solid_mechanics_model_cohesive/solid_mechanics_model_cohesive_inline_impl.cc
	M			src/model/solid_mechanics/solid_mechanics_model_cohesive/solid_mechanics_model_cohesive_parallel.cc
	M			src/model/solid_mechanics/solid_mechanics_model_embedded_interface/embedded_interface_intersector.hh
	M			src/model/solid_mechanics/solid_mechanics_model_embedded_interface/embedded_interface_model.cc
	M			src/model/solid_mechanics/solid_mechanics_model_embedded_interface/embedded_interface_model.hh
	M			src/model/solid_mechanics/solid_mechanics_model_event_handler.hh
	M			src/model/solid_mechanics/solid_mechanics_model_io.cc
	M			src/model/solid_mechanics/solid_mechanics_model_mass.cc
	M			src/model/solid_mechanics/solid_mechanics_model_material.cc
	M			src/model/structural_mechanics/structural_elements/structural_element_bernoulli_beam_3.hh
	M			src/model/structural_mechanics/structural_elements/structural_element_kirchhoff_shell.hh
	M			src/model/structural_mechanics/structural_mechanics_model.cc
	M			src/model/structural_mechanics/structural_mechanics_model_boundary.cc
	M			src/model/structural_mechanics/structural_mechanics_model_mass.cc
	M			src/solver/petsc_wrapper.hh
	M			src/solver/solver_petsc.hh
	M			src/solver/solver_vector.hh
	M			src/solver/solver_vector_default.cc
	M			src/solver/solver_vector_default.hh
	M			src/solver/solver_vector_default_tmpl.hh
	M			src/solver/solver_vector_petsc.hh
	M			src/solver/sparse_matrix.cc
	M			src/solver/sparse_matrix.hh
	M			src/solver/sparse_matrix_aij_inline_impl.cc
	M			src/solver/sparse_matrix_inline_impl.cc
	M			src/solver/sparse_matrix_petsc.cc
	M			src/solver/sparse_matrix_petsc.hh
	M			src/solver/sparse_solver.cc
	M			src/solver/sparse_solver.hh
	M			src/solver/sparse_solver_mumps.cc
	M			src/solver/sparse_solver_mumps.hh
	M			src/solver/terms_to_assemble.hh
	M			src/synchronizer/communication_buffer.hh
	M			src/synchronizer/communication_buffer_inline_impl.cc
	M			src/synchronizer/communication_descriptor_tmpl.hh
	M			src/synchronizer/communication_request.hh
	M			src/synchronizer/communication_tag.hh
	M			src/synchronizer/communications_tmpl.hh
	M			src/synchronizer/communicator_dummy_inline_impl.cc
	M			src/synchronizer/communicator_event_handler.hh
	M			src/synchronizer/communicator_mpi_inline_impl.cc
	M			src/synchronizer/data_accessor.cc
	M			src/synchronizer/data_accessor.hh
	M			src/synchronizer/dof_synchronizer.cc
	M			src/synchronizer/dof_synchronizer.hh
	M			src/synchronizer/dof_synchronizer_inline_impl.cc
	M			src/synchronizer/element_info_per_processor.cc
	M			src/synchronizer/element_info_per_processor.hh
	M			src/synchronizer/element_info_per_processor_tmpl.hh
	M			src/synchronizer/element_synchronizer.cc
	M			src/synchronizer/grid_synchronizer.cc
	M			src/synchronizer/master_element_info_per_processor.cc
	M			src/synchronizer/node_info_per_processor.hh
	M			src/synchronizer/node_synchronizer.cc
	M			src/synchronizer/node_synchronizer.hh
	M			src/synchronizer/periodic_node_synchronizer.hh
	M			src/synchronizer/synchronizer_registry.cc
	M			src/synchronizer/synchronizer_registry.hh
	M			src/synchronizer/synchronizer_tmpl.hh
	M			test/ci/Dockerfile
	A			test/ci/scripts/.arcconfig
	A			test/ci/scripts/.arclint
	A			test/ci/scripts/COPYING
	A			test/ci/scripts/COPYING.lesser
	D			test/ci/scripts/CTestResults.xml
	M			test/ci/scripts/harbomaster/__init__.py
	M			test/ci/scripts/harbomaster/arclint.py
	D			test/ci/scripts/harbomaster/ctestresults.py
	M			test/ci/scripts/harbomaster/hbm.py
	M			test/ci/scripts/harbomaster/results.py
	A			test/ci/scripts/harbomaster/testresults.py
	M			test/ci/scripts/hbm
	M			test/python_fe/__init__.py
	M			test/test_common/test_grid.cc
	M			test/test_common/test_iterators.cc
	M			test/test_common/test_tensors.cc
	M			test/test_fe_engine/py_engine/__init__.py
	M			test/test_fe_engine/py_engine/py_engine.py
	M			test/test_fe_engine/test_fe_engine_gauss_integration.cc
	M			test/test_fe_engine/test_fe_engine_precomputation.cc
	M			test/test_fe_engine/test_fe_engine_precomputation_bernoulli_3.cc
	M			test/test_fe_engine/test_integrate.cc
	M			test/test_geometry/test_segment_intersection_tetrahedron_4.cc
	M			test/test_gtest_main.cc
	M			test/test_gtest_utils.hh
	M			test/test_io/test_dumper/test_dumper.cc
	M			test/test_mesh/test_mesh_periodic.cc
	M			test/test_mesh_utils/test_mesh_iterators.cc
	M			test/test_model/patch_tests/patch_test_linear_anisotropic.cc
	M			test/test_model/patch_tests/patch_test_linear_fixture.hh
	M			test/test_model/test_common/test_dof_manager.cc
	M			test/test_model/test_common/test_model_solver/test_dof_manager_default.cc
	M			test/test_model/test_common/test_model_solver/test_model_solver.cc
	M			test/test_model/test_common/test_model_solver/test_model_solver_dynamic.cc
	M			test/test_model/test_common/test_model_solver/test_model_solver_dynamic.py
	M			test/test_model/test_common/test_model_solver/test_model_solver_dynamic_petsc.cc
	M			test/test_model/test_common/test_model_solver/test_model_solver_my_model.hh
	M			test/test_model/test_common/test_non_local_toolbox/plot_neighborhoods.py
	M			test/test_model/test_common/test_non_local_toolbox/test_build_neighborhood_parallel.cc
	M			test/test_model/test_common/test_non_local_toolbox/test_non_local_averaging.cc
	M			test/test_model/test_solid_mechanics_model/CMakeLists.txt
	M			test/test_model/test_solid_mechanics_model/test_cohesive/test_cohesive_fixture.hh
	M			test/test_model/test_solid_mechanics_model/test_cohesive/test_cohesive_insertion/test_cohesive_insertion_along_physical_surfaces.cc
	M			test/test_model/test_solid_mechanics_model/test_cohesive/test_cohesive_linear_friction/test_cohesive_friction.cc
	M			test/test_model/test_solid_mechanics_model/test_cohesive/test_materials/test_material_cohesive_fixture.hh
	M			test/test_model/test_solid_mechanics_model/test_cohesive/test_materials/test_material_cohesive_linear.cc
	M			test/test_model/test_solid_mechanics_model/test_energies/test_solid_mechanics_model_linear_elastic_potential_energy.cc
	M			test/test_model/test_solid_mechanics_model/test_materials/CMakeLists.txt
	M			test/test_model/test_solid_mechanics_model/test_materials/py_mazars.py
	M			test/test_model/test_solid_mechanics_model/test_materials/test_elastic_materials.cc
	M			test/test_model/test_solid_mechanics_model/test_materials/test_finite_def_materials.cc
	M			test/test_model/test_solid_mechanics_model/test_materials/test_local_material.cc
	M			test/test_model/test_solid_mechanics_model/test_materials/test_material_elasto_plastic_linear_isotropic_hardening/test_material_elasto_plastic_linear_isotropic_hardening.cc
	M			test/test_model/test_solid_mechanics_model/test_materials/test_material_fixtures.hh
	M			test/test_model/test_solid_mechanics_model/test_materials/test_material_mazars.cc
	M			test/test_model/test_solid_mechanics_model/test_materials/test_material_thermal.cc
	M			test/test_model/test_solid_mechanics_model/test_materials/test_material_viscoelastic/test_material_standard_linear_solid_deviatoric_relaxation.cc
	M			test/test_model/test_solid_mechanics_model/test_materials/test_material_viscoelastic_maxwell/test_material_viscoelastic_maxwell_relaxation.cc
	M			test/test_model/test_solid_mechanics_model/test_materials/test_plastic_materials.cc
	M			test/test_model/test_solid_mechanics_model/test_solid_mechanics_model_material_eigenstrain.cc
	M			test/test_model/test_structural_mechanics_model/test_structural_mechanics_model_bernoulli_beam_dynamics.cc
	M			test/test_python_interface/CMakeLists.txt
	M			test/test_python_interface/test_pybind.py
	M			test/test_solver/test_solver_petsc.cc
	M			test/test_solver/test_sparse_matrix_product.cc
	M			test/test_solver/test_sparse_solver_mumps.cc
	M			test/test_synchronizer/test_communicator.cc
	M			test/test_synchronizer/test_data_distribution.cc
	M			test/test_synchronizer/test_dof_synchronizer_communication.cc
	M			test/test_synchronizer/test_facet_synchronizer.cc
	M			test/test_synchronizer/test_grid_synchronizer.cc
	M			test/test_synchronizer/test_node_synchronizer.cc
	M			test/test_synchronizer/test_synchronizer_communication.cc
	M			third-party/cmake/gtest.cmake