Diffusion akantu 4e311a5e5310

Merge branch 'master' into features/mesh-periodic-info-in-python
4e311a5e5310
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Authored by Nicolas Richart <networms@gmail.ch> on Jan 20 2022, 14:14.

Description

Merge branch 'master' into features/mesh-periodic-info-in-python

Details

Committed

Nicolas Richart <networms@gmail.ch>

Jan 20 2022, 14:14

Pushed

gitlab-richart

Jan 20 2022, 16:45

Parents

rAKAb9f6bc187ae3: Remove `except tags` in the configuration steps
rAKA7ff89e9b9c50: Bug fix

Branches

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Tags

Unknown

Event Timeline

Nicolas Richart <networms@gmail.ch> committed rAKA4e311a5e5310: Merge branch 'master' into features/mesh-periodic-info-in-python (authored by Nicolas Richart <networms@gmail.ch>).Jan 20 2022, 14:14

Merged Changes

Commit	Author	Details	Committed
b9f6bc187ae3	Nicolas Richart	Remove `except tags` in the configuration steps	Jan 17 2022
fbdc2ac1ae19	richart	Merge branch 'bugfixes/docker-image' into 'master'	Jan 15 2022
96aea35d9bf2	Nicolas Richart	Changed debian:testing to debian:bullseye and corrected coverage	Jan 15 2022
9c40e0686a82	richart	Merge branch 'bugfixes/cmake_regex_error' into 'master'	Jan 15 2022
faa3ae1123b2	anciaux	Merge branch 'master' into bugfixes/cmake_regex_error	Jan 14 2022
cb44d0f7690c	tdroch	Merge branch 'bugfixes/36-pretty-print-of-akantu-array' into 'master'	Jan 14 2022
e8261daf649e	anciaux	change apt-get to apt hoping to have the key problem fixed	Jan 14 2022
b58c882ac2a1	anciaux	Some cmake version complains about an illegal character	Jan 13 2022
2610f04da5bc	Nicolas Richart	Debugging warning linter	Jan 12 2022
1bf1286f15f4	Nicolas Richart	Updating pterry printers and adding missing regexp for Arrays	Jan 11 2022
dc73cc98c872	richart	Merge branch 'features/moving-pypi-package-in-main-akantu' into 'master'	Dec 23 2021
4d4db01864a7	richart	This makes the CI build the python wheel - on master it pushes the wheel to the…	Dec 23 2021
1c72ce33b004	tdroch	Merge branch 'features/terms-to-add-in-python' into 'master'	Nov 23 2021
6503defbf56c	Nicolas Richart	Bug fix in the interface	Nov 10 2021
90b20d4c42ee	Nicolas Richart	Remove pure virtual where not needed	Nov 9 2021
9fe7ea111967	richart	Adding missing consts	Nov 5 2021
174a2e1ab3ac	richart	Adding a layer InterceptSolverCallback to simplify the interception	Nov 5 2021
3ad087540b2b	richart	Moved dofs ids information to TermsToAssemble	Nov 5 2021
6a555e268fa8	Nicolas Richart	Example of solver_callback usage	Oct 22 2021
44aa27ae672e	Nicolas Richart	Adding missing parts in the interface and debugging	Oct 22 2021
ff3af874c77d	Nicolas Richart	Merge remote-tracking branch 'origin/master' into features/terms-to-add-in…	Oct 21 2021
1cf5685c9724	richart	Adding TermsToAdd and SolverCallbacks to python interface	Oct 20 2021

Changes (166)

		Path
M		.editorconfig
M		.gitignore
A	(dir)	.gitlab-ci.d/
A		.gitlab-ci.d/code-quality.yaml
A		.gitlab-ci.d/images.yaml
A		.gitlab-ci.d/templates.yaml
M		.gitlab-ci.yml
A		.pypirc
M		CMakeLists.txt
A		MANIFEST.in
D		README
A		README.md
M		VERSION
M		cmake/AkantuConfig.cmake.in
M		cmake/AkantuExtraCompilationProfiles.cmake
M		cmake/AkantuInstall.cmake
A		cmake/AkantuNeedPybind11.cmake
M		cmake/AkantuTestsMacros.cmake
M		cmake/Modules/CMakePackagesSystem.cmake
M		cmake/Modules/CMakeVersionGenerator.cmake
D		cmake/Modules/FindCppArray.cmake
M		cmake/Modules/FindGMSH.cmake
D		cmake/Modules/FindIOHelper.cmake
M		cmake/Modules/FindMumps.cmake
D		cmake/Modules/FindNumpy.cmake
M		cmake/Modules/FindScaLAPACK.cmake
M		cmake/akantu_install_environement.csh.in
M		cmake/akantu_install_environement.sh.in
A		cmake/akantu_version.py.in
M		cmake/libakantu/v3/printers.py
A		dev-requirements.txt
A	(dir)	examples/python/solver_callback/
V		{examples/python/solver_callback/CMakeLists.txt ← packages/python_interpreter.cmake}
A		examples/python/solver_callback/bar.geo
A		examples/python/solver_callback/material.dat
A		examples/python/solver_callback/solver_callback.py
M		examples/python/structural_mechanics/CMakeLists.txt
M		extra_packages/igfem/src/solid_mechanics_model_igfem.cc
M		extra_packages/traction-at-split-node-contact/src/ntn_contact/friction_laws/ntn_friclaw_coulomb_tmpl.hh
M		extra_packages/traction-at-split-node-contact/src/ntn_contact/friction_laws/ntn_friclaw_linear_cohesive_tmpl.hh
M		extra_packages/traction-at-split-node-contact/src/ntn_contact/friction_laws/ntn_friclaw_linear_slip_weakening_tmpl.hh
M		extra_packages/traction-at-split-node-contact/src/ntn_contact/friction_regularisations/ntn_fricreg_no_regularisation.cc
M		extra_packages/traction-at-split-node-contact/src/ntn_contact/friction_regularisations/ntn_fricreg_rubin_ampuero.cc
M		extra_packages/traction-at-split-node-contact/src/ntn_contact/friction_regularisations/ntn_fricreg_simplified_prakash_clifton.cc
M		extra_packages/traction-at-split-node-contact/src/ntn_contact/ntn_base_contact.cc
M		extra_packages/traction-at-split-node-contact/src/ntn_contact/ntn_base_friction.cc
M		extra_packages/traction-at-split-node-contact/src/ntn_contact/ntn_contact.cc
M		extra_packages/traction-at-split-node-contact/src/ntn_contact/ntrf_contact.cc
M		extra_packages/traction-at-split-node-contact/src/ntn_contact/ntrf_friction_tmpl.hh
M		packages/akantu_iterators.cmake
M		packages/blas.cmake
M		packages/dumpers.cmake
M		packages/google-test.cmake
M		packages/iohelper.cmake
M		packages/mumps.cmake
M		packages/numpy.cmake
M		packages/pybind11.cmake
A		packages/python.cmake
M		packages/python_interface.cmake
V		{packages/python_interpreter.cmake → examples/python/solver_callback/CMakeLists.txt}
D		packages/pythonlibs.cmake
M		packages/scalapack.cmake
M		packages/scotch.cmake
A		pyproject.toml
M		python/CMakeLists.txt
M		python/py_akantu.cc
A		python/py_dof_manager.cc
P		python/py_dof_manager.hh Copied from src/io/dumper/dumpable.hh
M		python/py_model.cc
M		python/py_solid_mechanics_model.cc
M		python/py_solver.cc
A		setup.cfg
A		setup.py
M		src/CMakeLists.txt
M		src/common/aka_config.hh.in
M		src/fe_engine/fe_engine_template.hh
M		src/io/dumper/dumpable.cc
P		src/io/dumper/dumpable.hh Copied to python/py_dof_manager.hh
M		src/io/dumper/dumpable_inline_impl.hh
M		src/io/dumper/dumper_field.hh
M		src/mesh/element_group.cc
M		src/mesh/group_manager_inline_impl.hh
M		src/mesh/mesh.cc
M		src/mesh/node_group.cc
M		src/model/common/dof_manager/dof_manager.hh
M		src/model/common/dof_manager/dof_manager_default.cc
M		src/model/common/dof_manager/dof_manager_default.hh
M		src/model/common/dof_manager/dof_manager_inline_impl.hh
M		src/model/common/dof_manager/dof_manager_petsc.cc
M		src/model/common/dof_manager/dof_manager_petsc.hh
M		src/model/common/solver_callback.hh
M		src/model/common/time_step_solvers/time_step_solver.hh
M		src/model/contact_mechanics/contact_mechanics_model.cc
M		src/model/contact_mechanics/contact_mechanics_model.hh
M		src/model/heat_transfer/heat_transfer_model.cc
M		src/model/heat_transfer/heat_transfer_model.hh
M		src/model/model.cc
M		src/model/model_couplers/cohesive_contact_solvercallback.cc
M		src/model/model_couplers/cohesive_contact_solvercallback.hh
M		src/model/model_couplers/coupler_solid_cohesive_contact.cc
M		src/model/model_couplers/coupler_solid_contact.cc
M		src/model/model_couplers/coupler_solid_contact.hh
M		src/model/model_couplers/coupler_solid_contact_tmpl.hh
M		src/model/model_couplers/coupler_solid_phasefield.cc
M		src/model/model_couplers/coupler_solid_phasefield.hh
M		src/model/phase_field/phase_field_model.cc
M		src/model/phase_field/phase_field_model.hh
M		src/model/solid_mechanics/material.hh
M		src/model/solid_mechanics/solid_mechanics_model.cc
M		src/model/solid_mechanics/solid_mechanics_model.hh
M		src/model/solid_mechanics/solid_mechanics_model_cohesive/solid_mechanics_model_cohesive.cc
M		src/model/solid_mechanics/solid_mechanics_model_embedded_interface/embedded_interface_model.cc
M		src/model/solid_mechanics/solid_mechanics_model_io.cc
M		src/model/structural_mechanics/structural_mechanics_model.cc
M		src/model/structural_mechanics/structural_mechanics_model.hh
M		src/solver/terms_to_assemble.hh
A	(dir)	test/ci/debian:bullseye/
V	(dir)	test/ci/{debian:bullseye/.openmpi/ ← debian:testing/.openmpi}
V		test/ci/{debian:bullseye ← debian:testing}/.openmpi/mca-params.conf
V		test/ci/{debian:bullseye ← debian:testing}/Dockerfile
D		test/ci/debian:testing
V	(dir)	test/ci/{debian:testing/.openmpi/ → debian:bullseye/.openmpi}
V		test/ci/{debian:testing → debian:bullseye}/.openmpi/mca-params.conf
V		test/ci/{debian:testing → debian:bullseye}/Dockerfile
M		test/ci/includes_for_ci/aka_config.hh
A		test/ci/make-wheels.sh
D		test/ci/manylinux
D		test/ci/manylinux/Dockerfile
V		test/ci/{manylinux → manylinux:2010_x86_64}/compilers.yaml
A	(dir)	test/ci/manylinux:2010_x86_64/
A		test/ci/manylinux:2010_x86_64/Dockerfile
A		test/ci/manylinux:2010_x86_64/Toolchain.cmake
V		test/ci/{manylinux:2010_x86_64 ← manylinux}/compilers.yaml
A		test/ci/manylinux:2010_x86_64/install-pip.sh
A		test/ci/manylinux:2010_x86_64/packages.yaml
A		test/ci/manylinux:2010_x86_64/repos.yaml
A		test/ci/manylinux:2010_x86_64/spack.yaml
M		test/ci/scripts/codequality/issue_generator_warnings.py
M		test/ci/ubuntu:lts/Dockerfile
M		test/test_gtest_main.cc
M		test/test_mesh_utils/test_mesh_partitionate/test_mesh_partitionate_mesh_data.cc
M		test/test_mesh_utils/test_mesh_partitionate/test_mesh_partitionate_scotch.cc
M		test/test_model/test_common/test_model_solver/test_dof_manager_default.cc
M		test/test_model/test_common/test_model_solver/test_model_solver_my_model.hh
M		test/test_model/test_common/test_non_local_toolbox/my_model.hh
M		test/test_model/test_solid_mechanics_model/test_cohesive/test_parallel_cohesive/test_cohesive_parallel_extrinsic/test_cohesive_parallel_extrinsic_tetrahedron_displacement.cc
M		test/test_solver/test_sparse_matrix_profile_parallel.cc
M		test/test_solver/test_sparse_solver_mumps.cc
M		test/test_synchronizer/test_dof_synchronizer.cc
M		test/test_synchronizer/test_dof_synchronizer_communication.cc
M		test/test_synchronizer/test_grid_synchronizer.cc
D		third-party/MUMPS_4.10.0.patch
D		third-party/MUMPS_4.10.0_make.inc.cmake
D		third-party/MUMPS_4.9.2_make.inc.cmake
D		third-party/MUMPS_5.0.0.patch
M		third-party/akantu_iterators/CMakeLists.txt
D		third-party/blas_3.5.0_make.inc.cmake
D		third-party/cmake/mumps.cmake
D		third-party/cmake/scalapack.cmake
D		third-party/cmake/scotch.cmake
M		third-party/iohelper/src/CMakeLists.txt
M		third-party/pybind11.cmake.in
D		third-party/scalapack_2.0.2.patch
D		third-party/scotch_5.1.12b.patch
D		third-party/scotch_5.1.12b_make.inc.cmake
A		versioneer.py