Diffusion akantu 571699bcd9af

Improving the documentation according to the JOSS review
571699bcd9af
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Authored by richart on Dec 12 2023, 08:47.

Description

Improving the documentation according to the JOSS review

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Committed

richart

Dec 12 2023, 08:47

Pushed

gitlab-richart

Dec 12 2023, 08:47

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rAKA9f4afd25dd16: A not initialized in material_cohesive

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richart committed rAKA571699bcd9af: Improving the documentation according to the JOSS review (authored by richart).Dec 12 2023, 08:47

Changes (81)

				Path
	M			.gitlab-ci.yml
	M			.gitlab/ci.d/code-quality.yaml
	M			.gitlab/ci.d/images.yaml
	M			.gitlab/ci.d/templates.yaml
	M			cmake/AkantuExampleMacros.cmake
	M			doc/dev-doc/CMakeLists.txt
	M			doc/dev-doc/akantu.dox.j2
	M			doc/dev-doc/conf.py
	M			doc/dev-doc/manual/contactmechanicsmodel.rst
	M			doc/dev-doc/manual/diffusion.rst
	M			doc/dev-doc/manual/solidmechanicsmodel.rst
	M			doc/dev-doc/requirements.txt
	M			doc/dev-doc/tutorials.rst
	M			examples/README.rst
	M			examples/c++/contact_mechanics_model/README.rst
	M			examples/c++/contact_mechanics_model/cohesive_contact_explicit_dynamic.cc
	M			examples/c++/contact_mechanics_model/contact_explicit_dynamic.cc
	M			examples/c++/contact_mechanics_model/contact_explicit_static.cc
	M			examples/c++/diffusion_model/README.rst
	M			examples/c++/diffusion_model/heat_diffusion_dynamics_2d.cc
	M			examples/c++/diffusion_model/heat_diffusion_dynamics_3d.cc
	M			examples/c++/diffusion_model/heat_diffusion_static_2d.cc
	M			examples/c++/phase_field_model/README.rst
	M			examples/c++/phase_field_model/phase_field_notch.cc
	M			examples/c++/phase_field_model/phase_field_parallel.cc
	M			examples/c++/solid_mechanics_cohesive_model/cohesive_extrinsic/README.rst
	M			examples/c++/solid_mechanics_cohesive_model/cohesive_extrinsic/cohesive_extrinsic.cc
	M			examples/c++/solid_mechanics_cohesive_model/cohesive_extrinsic_ig_tg/README.rst
	M			examples/c++/solid_mechanics_cohesive_model/cohesive_extrinsic_ig_tg/cohesive_extrinsic_ig_tg.cc
	M			examples/c++/solid_mechanics_cohesive_model/cohesive_intrinsic/README.rst
	M			examples/c++/solid_mechanics_cohesive_model/cohesive_intrinsic/cohesive_intrinsic.cc
	M			examples/c++/solid_mechanics_model/README.rst
	M			examples/c++/solid_mechanics_model/boundary_conditions/CMakeLists.txt
	M			examples/c++/solid_mechanics_model/boundary_conditions/README.rst
	M			examples/c++/solid_mechanics_model/boundary_conditions/predefined_bc/predefined_bc.cc
	M			examples/c++/solid_mechanics_model/boundary_conditions/python_user_defined_bc/boundary_condition.py
	M			examples/c++/solid_mechanics_model/boundary_conditions/python_user_defined_bc/python_user_defined_bc.cc
	M			examples/c++/solid_mechanics_model/boundary_conditions/user_defined_bc/user_defined_bc.cc
	M			examples/c++/solid_mechanics_model/explicit/README.rst
	M			examples/c++/solid_mechanics_model/explicit/explicit_dynamic.cc
	M			examples/c++/solid_mechanics_model/implicit/README.rst
	M			examples/c++/solid_mechanics_model/implicit/implicit_dynamic.cc
	M			examples/c++/solid_mechanics_model/io/README.rst
	M			examples/c++/solid_mechanics_model/io/dumper/dumpable_interface.cc
	M			examples/c++/solid_mechanics_model/io/dumper/dumper_low_level.cc
	M			examples/c++/solid_mechanics_model/io/parser/example_parser.cc
	M			examples/c++/solid_mechanics_model/new_material/README.rst
	M			examples/c++/solid_mechanics_model/new_material/new_local_material.cc
	M			examples/c++/solid_mechanics_model/parallel/README.rst
	M			examples/c++/solid_mechanics_model/parallel/parallel_2d.cc
	M			examples/c++/solid_mechanics_model/static/README.rst
	M			examples/c++/solid_mechanics_model/static/images/static_displ_mag.png
	M			examples/c++/solid_mechanics_model/static/static.cc
	M			examples/python/README.rst
	M			examples/python/contact_mechanics_model/README.rst
	M			examples/python/phase_field_model/README.rst
	M			examples/python/solid_mechanics_cohesive_model/cohesive/README.rst
	M			examples/python/solid_mechanics_cohesive_model/fragmentation/README.rst
	M			examples/python/solid_mechanics_model/README.rst
	M			examples/python/solid_mechanics_model/custom-material/README.rst
	M			examples/python/solid_mechanics_model/dynamics/README.rst
	M			examples/python/solid_mechanics_model/eigen_modes/README.rst
	M			examples/python/solid_mechanics_model/plate-hole/README.rst
	M			examples/python/solid_mechanics_model/solver_callback/README.rst
	M			examples/python/solid_mechanics_model/stiffness_matrix/README.rst
	M			packages/contact_mechanics.cmake
	M			packages/core.cmake
	M			src/common/aka_config.cc.in
	M			src/common/aka_config.hh.in
	M			src/common/aka_element_classes_info.hh
	D			src/common/aka_element_classes_info.hh.in
	M			src/mesh/mesh.hh
	M			src/model/contact_mechanics/contact_detector.hh
	V			src/model/contact_mechanics/{contact_detector_inline_impl.cc → contact_detector_inline_impl.hh}
	V			src/model/contact_mechanics/{contact_detector_inline_impl.hh ← contact_detector_inline_impl.cc}
	M			src/model/contact_mechanics/geometry_utils.hh
	V			src/model/contact_mechanics/{geometry_utils_inline_impl.cc → geometry_utils_inline_impl.hh}
	V			src/model/contact_mechanics/{geometry_utils_inline_impl.hh ← geometry_utils_inline_impl.cc}
	M			third-party/akantu_iterators/include/aka_str_hash.hh
	M			third-party/akantu_iterators/include/iterators/aka_filter_iterator.hh
	M			third-party/akantu_iterators/test/test_tuples.cc