conflicts with master resolved
63e723568c6c
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Authored by pundir on Oct 2 2019, 16:10.

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conflicts with master resolved

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Committed

pundir

Oct 2 2019, 16:10

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gitlab-richart

Jul 29 2021, 09:01

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rAKAdec47ae94661: Add 'test/ci/scripts/' from commit 'df23807ae10b118336f2e819c6a205b0704401e5'
rAKA2f449dcda0b1: added geometry utils to ease friciton calculation

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pundir committed rAKA63e723568c6c: conflicts with master resolved (authored by pundir).Oct 2 2019, 16:10

Merged Changes

This commit merges a very large number of changes. Only the first 50 are shown.

Commit	Author	Details	Committed
dec47ae94661	richart	Add 'test/ci/scripts/' from commit 'df23807ae10b118336f2e819c6a205b0704401e5'	Sep 24 2019
342ac7beecee	richart	splitting repositories	Sep 24 2019
df23807ae10b	richart	arclinting arclint.py	Sep 24 2019
1f8ceb41cdb1	richart	cleaning usless files	Sep 24 2019
41e7f928e7f3	richart	preparation to split hbm scripts in a different project	Sep 24 2019
9b0b8a6b22b2	richart	preparation to split hbm scripts in a different project	Sep 24 2019
d16bb4b1e67d	richart	Merge branch 'master' of c4science.ch:/diffusion/AKAPRIV/akantu-private	Sep 24 2019
07f320d9a304	frerot	added parser for junit in harbormaster ci scripts	Sep 23 2019
41d91ae41651	frerot	added parser for junit in harbormaster ci scripts	Sep 23 2019
4b00ed89f550	richart	bug in the interface	Sep 17 2019
3fdc4ee052a4	richart	Bug fix in exclusiveScan in sequential	Sep 17 2019
8d4effaa2144	richart	cleaning the code	Sep 4 2019
dc616972a49a	richart	Do not compute shape derivatives on all type in onElementsAdded	Aug 27 2019
b3f8b6dd7ebb	richart	linting to make jenkins happy again	Aug 27 2019
2f6c39dd1049	richart	missed the structural shape functions	Aug 27 2019
00ddecef1c66	richart	Limiting the shape functions and integrator to one dimension	Aug 27 2019
aceea939d413	richart	modernizing the code	Aug 21 2019
273de36873a2	richart	adding some debugging	Aug 21 2019
fb1c462a64eb	richart	Copying missing file	Aug 21 2019
de5aab8dbcc3	richart	Material selector test correction	Aug 21 2019
d9813e44eab2	richart	bug fix in the profil construction	Aug 20 2019
4cc5593bbcc3	richart	Removing useless function + bug fix	Aug 20 2019
173ad494e739	richart	trying to compensate google breaking compatibility without change version…	Aug 14 2019
1b4cc34760d6	richart	Correcting python examples	Aug 14 2019
506facc40360	richart	adding types capabilities	Aug 14 2019
25ce746b01c9	richart	Correcting some stuff in the dumpers	Aug 14 2019
1df7f98dd040	richart	merge ?	Aug 14 2019
1b5c0762adf5	richart	Modified pybind11 to work also with 2.3	Aug 14 2019
bba624502e8f	frerot	Merge branch 'master' of ssh://c4science.ch/diffusion/AKAPRIV/akantu-private	Aug 14 2019
8f67ae44aaa2	frerot	protected pybind tests if python interface is not activated	Aug 13 2019
68b36dbdab07	richart	made the getNbDataPerElem more generic	Aug 9 2019
85bbe0855508	richart	Make tests faster by not running the examples	Jul 23 2019
9d98a08af0ca	richart	Adding more options to ci	Jul 19 2019
d0573c64ba77	richart	backward compatibility for pybind11 interface	Jul 19 2019
d813e3429b63	richart	Correcting some examples	Jul 19 2019
10b7ce394580	richart	run parallel examples with mpi	Jul 19 2019
7863d49f001b	richart	arc lint --everything	Jul 19 2019
5cf490a6c1b7	richart	arc lint --everything	Jul 19 2019
dd7a93e3d228	richart	Making examples testable (just running them nothing fancy)	Jul 19 2019
a88fe88b52f9	richart	adapt to latest changes	Jul 19 2019
5af31d108e6b	richart	removed unused variables	Jul 19 2019
1fe95d9275e3	richart	Trying to figure out the checkout	Jul 19 2019
3e2ce1b3f4ec	richart	more synthax errors	Jul 18 2019
36a1cff1722f	richart	Merge branch 'master' of c4science.ch:/diffusion/AKAPRIV/akantu-private	Jul 18 2019
77d5e25c4217	richart	bug in synthax	Jul 18 2019
5f91ae6dd213	richart	Checkout proper commit	Jul 18 2019
56500b9499ee	richart	skip default checkout	Jul 18 2019
6cc99d648484	gallyamov	Merge branch 'master' of ssh://c4science.ch/diffusion/AKAPRIV/akantu-private	Jul 18 2019
83daca0d40ff	gallyamov	Remove ghost_type from energy computation	Jul 18 2019
9a7dc4b02c38	richart	Removing artifacts	Jul 18 2019

Changes (463)
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This commit is very large. Load each file individually.

				Path
	A			.flake8
	M			CMakeLists.txt
	M			Jenkinsfile
	M			cmake/AkantuExampleMacros.cmake
	M			cmake/AkantuMacros.cmake
	M			cmake/AkantuSimulationMacros.cmake
	M			cmake/AkantuTestsMacros.cmake
	M			cmake/Modules/FindGMSH.cmake
	M			cmake/libakantu/v3/printers.py
	M			doc/manual/manual-solidmechanicsmodel.tex
	M			examples/cohesive_element/cohesive_extrinsic/cohesive_extrinsic.cc
	M			examples/cohesive_element/cohesive_extrinsic_implicit/cohesive_extrinsic_implicit.cc
	M			examples/cohesive_element/cohesive_intrinsic/cohesive_intrinsic.cc
	M			examples/cohesive_element/cohesive_intrinsic/triangle.geo
	M			examples/explicit/explicit_dynamic.cc
	M			examples/heat_transfer/heat_transfer_static_2d.cc
	M			examples/implicit/implicit_dynamic.cc
	M			examples/io/dumper/CMakeLists.txt
	M			examples/io/dumper/dumpable_interface.cc
	M			examples/io/dumper/dumper_low_level.cc
	M			examples/new_material/local_material_damage.cc
	M			examples/new_material/local_material_damage.hh
	M			examples/new_material/local_material_damage_inline_impl.hh
	M			examples/new_material/viscoelastic_maxwell/material_viscoelastic_maxwell_energies.cc
	M			examples/parallel/CMakeLists.txt
	M			examples/python/CMakeLists.txt
	A			examples/python/cohesive/CMakeLists.txt
	M			examples/python/cohesive/plate.py
	M			examples/python/custom-material/CMakeLists.txt
	M			examples/python/custom-material/bi-material.py
	M			examples/python/custom-material/custom-material.py
	A			examples/python/dynamics/CMakeLists.txt
	M			examples/python/dynamics/dynamics.py
	A			examples/python/eigen_modes/CMakeLists.txt
	M			examples/python/eigen_modes/eigen_modes.py
	M			examples/python/eigen_modes/image_saver.py
	M			examples/python/plate-hole/CMakeLists.txt
	D			examples/python/plate-hole/plate-mpi.py
	M			examples/python/plate-hole/plate.py
	M			examples/python/stiffness_matrix/CMakeLists.txt
	M			examples/python/stiffness_matrix/plate.msh
	M			examples/python/stiffness_matrix/stiffness_matrix.py
	M			extra_packages/extra-materials/src/material_FE2/material_FE2.cc
	M			extra_packages/extra-materials/src/material_FE2/solid_mechanics_model_RVE.cc
	M			extra_packages/extra-materials/src/material_damage/material_brittle_inline_impl.cc
	M			extra_packages/extra-materials/src/material_damage/material_damage_iterative.cc
	M			extra_packages/extra-materials/src/material_damage/material_damage_iterative.hh
	M			extra_packages/extra-materials/src/material_damage/material_damage_iterative_inline_impl.cc
	M			extra_packages/extra-materials/src/material_damage/material_orthotropic_damage.hh
	M			extra_packages/extra-materials/src/material_damage/material_orthotropic_damage_iterative.cc
	M			extra_packages/extra-materials/src/material_damage/material_orthotropic_damage_iterative.hh
	M			extra_packages/extra-materials/src/material_damage/material_orthotropic_damage_tmpl.hh
	M			extra_packages/extra-materials/src/material_damage/material_vreepeerlings_inline_impl.cc
	M			extra_packages/extra-materials/src/material_plastic/material_viscoplastic.cc
	M			extra_packages/extra-materials/test/test_material_damage/test_material_damage_iterative_non_local_parallel.cc
	M			extra_packages/extra-materials/test/test_material_damage/test_material_damage_iterative_non_local_serial.cc
	M			extra_packages/igfem/src/element_class_igfem.hh
	M			extra_packages/igfem/src/igfem_enrichment.cc
	M			extra_packages/igfem/src/material_igfem/material_igfem_elastic.cc
	M			extra_packages/igfem/src/mesh_igfem_spherical_growing_gel_tmpl.hh
	M			extra_packages/igfem/test/patch_tests/test_igfem_triangle_4.cc
	M			extra_packages/igfem/test/patch_tests/test_igfem_triangle_5.cc
	M			extra_packages/igfem/test/patch_tests/test_interface_position.cc
	M			extra_packages/igfem/test/test_solid_mechanics_model_igfem/test_ASR_damage.cc
	M			extra_packages/igfem/test/test_solid_mechanics_model_igfem/test_material_igfem_iterative_stiffness_reduction.cc
	M			extra_packages/igfem/test/test_solid_mechanics_model_igfem/test_material_igfem_iterative_stiffness_reduction_damage_step_transfer.cc
	M			extra_packages/igfem/test/test_solid_mechanics_model_igfem/test_material_igfem_iterative_stiffness_reduction_parallel.cc
	M			extra_packages/igfem/test/test_solid_mechanics_model_igfem/test_solid_mechanics_model_igfem.cc
	M			extra_packages/traction-at-split-node-contact/src/boundary_conditions/force_based_dirichlet.hh
	M			extra_packages/traction-at-split-node-contact/src/common/synchronized_array.cc
	M			extra_packages/traction-at-split-node-contact/src/functions/boundary_functions.cc
	M			extra_packages/traction-at-split-node-contact/src/ntn_contact/friction_laws/ntn_friclaw_coulomb_tmpl.hh
	M			extra_packages/traction-at-split-node-contact/src/ntn_contact/friction_laws/ntn_friclaw_linear_cohesive_tmpl.hh
	M			extra_packages/traction-at-split-node-contact/src/ntn_contact/friction_laws/ntn_friclaw_linear_slip_weakening_no_healing_tmpl.hh
	M			extra_packages/traction-at-split-node-contact/src/ntn_contact/friction_laws/ntn_friclaw_linear_slip_weakening_tmpl.hh
	M			extra_packages/traction-at-split-node-contact/src/ntn_contact/friction_regularisations/ntn_fricreg_no_regularisation.cc
	M			extra_packages/traction-at-split-node-contact/src/ntn_contact/friction_regularisations/ntn_fricreg_rubin_ampuero.cc
	M			extra_packages/traction-at-split-node-contact/src/ntn_contact/friction_regularisations/ntn_fricreg_simplified_prakash_clifton.cc
	M			extra_packages/traction-at-split-node-contact/src/ntn_contact/friction_regularisations/ntn_fricreg_simplified_prakash_clifton.hh
	M			extra_packages/traction-at-split-node-contact/src/ntn_contact/mIIasym_contact.cc
	M			extra_packages/traction-at-split-node-contact/src/ntn_contact/ntn_base_contact.cc
	M			extra_packages/traction-at-split-node-contact/src/ntn_contact/ntn_base_contact.hh
	M			extra_packages/traction-at-split-node-contact/src/ntn_contact/ntn_base_friction.cc
	M			extra_packages/traction-at-split-node-contact/src/ntn_contact/ntn_base_friction.hh
	M			extra_packages/traction-at-split-node-contact/src/ntn_contact/ntn_contact.cc
	M			extra_packages/traction-at-split-node-contact/src/ntn_contact/ntn_initiation_function.hh
	M			packages/core.cmake
	M			packages/solid_mechanics.cmake
	M			python/CMakeLists.txt
	A			python/py11_akantu.cc
	M			python/py_aka_array.hh
	M			python/py_group_manager.cc
	M			python/py_material.cc
	M			python/py_model.cc
	M			src/common/aka_array.hh
	A			src/common/aka_array_printer.hh
	M			src/common/aka_array_tmpl.hh
	M			src/common/aka_bbox.hh
	M			src/common/aka_blas_lapack.hh
	M			src/common/aka_circular_array.hh
	M			src/common/aka_common.cc
	M			src/common/aka_common.hh
	M			src/common/aka_common_inline_impl.cc
	M			src/common/aka_csr.hh
	M			src/common/aka_element_classes_info_inline_impl.cc
	M			src/common/aka_error.cc
	M			src/common/aka_error.hh
	M			src/common/aka_grid_dynamic.hh
	M			src/common/aka_iterators.hh
	M			src/common/aka_math.cc
	M			src/common/aka_math.hh
	M			src/common/aka_math_tmpl.hh
	M			src/common/aka_memory.cc
	M			src/common/aka_memory.hh
	M			src/common/aka_random_generator.hh
	M			src/common/aka_safe_enum.hh
	M			src/common/aka_static_memory.cc
	M			src/common/aka_typelist.hh
	M			src/common/aka_types.hh
	M			src/common/aka_visitor.hh
	M			src/common/aka_voigthelper.cc
	M			src/common/aka_voigthelper.hh
	M			src/common/aka_voigthelper_tmpl.hh
	M			src/fe_engine/element.hh
	M			src/fe_engine/element_class.hh
	M			src/fe_engine/element_classes/element_class_hermite_inline_impl.cc
	M			src/fe_engine/element_classes/element_class_hexahedron_20_inline_impl.cc
	M			src/fe_engine/element_classes/element_class_kirchhoff_shell_inline_impl.cc
	M			src/fe_engine/element_classes/element_class_pentahedron_15_inline_impl.cc
	M			src/fe_engine/element_classes/element_class_pentahedron_6_inline_impl.cc
	M			src/fe_engine/element_classes/element_class_triangle_6_inline_impl.cc
	M			src/fe_engine/fe_engine.hh
	M			src/fe_engine/fe_engine_inline_impl.cc
	M			src/fe_engine/fe_engine_template_cohesive.cc
	M			src/fe_engine/fe_engine_template_tmpl.hh
	M			src/fe_engine/fe_engine_template_tmpl_field.hh
	M			src/fe_engine/fe_engine_template_tmpl_struct.hh
	M			src/fe_engine/gauss_integration_tmpl.hh
	M			src/fe_engine/geometrical_element_property.cc
	M			src/fe_engine/geometrical_element_property.hh
	M			src/fe_engine/integration_point.hh
	M			src/fe_engine/integrator.hh
	M			src/fe_engine/integrator_gauss.hh
	M			src/fe_engine/integrator_gauss_inline_impl.cc
	M			src/fe_engine/interpolation_element_tmpl.hh
	M			src/fe_engine/shape_cohesive.hh
	M			src/fe_engine/shape_cohesive_inline_impl.cc
	M			src/fe_engine/shape_functions.cc
	M			src/fe_engine/shape_functions.hh
	M			src/fe_engine/shape_lagrange.hh
	M			src/fe_engine/shape_lagrange_base.cc
	M			src/fe_engine/shape_lagrange_base.hh
	M			src/fe_engine/shape_lagrange_inline_impl.cc
	M			src/fe_engine/shape_structural.cc
	M			src/fe_engine/shape_structural.hh
	M			src/fe_engine/shape_structural_inline_impl.cc
	M			src/geometry/aabb_primitives/aabb_primitive.cc
	M			src/geometry/aabb_primitives/aabb_primitive.hh
	M			src/geometry/aabb_primitives/line_arc.hh
	M			src/geometry/aabb_primitives/tetrahedron.hh
	M			src/geometry/aabb_primitives/triangle.hh
	M			src/geometry/geom_helper_functions.hh
	M			src/geometry/mesh_abstract_intersector.hh
	M			src/geometry/mesh_abstract_intersector_tmpl.hh
	M			src/geometry/mesh_geom_abstract.hh
	M			src/geometry/mesh_geom_common.hh
	M			src/geometry/mesh_geom_factory.hh
	M			src/geometry/mesh_geom_factory_tmpl.hh
	M			src/geometry/mesh_geom_intersector.hh
	M			src/geometry/mesh_geom_intersector_tmpl.hh
	M			src/geometry/mesh_segment_intersector.hh
	M			src/geometry/mesh_sphere_intersector.hh
	M			src/geometry/mesh_sphere_intersector_tmpl.hh
	M			src/geometry/tree_type_helper.hh
	M			src/io/dumper/dumpable.cc
	M			src/io/dumper/dumpable_dummy.hh
	M			src/io/dumper/dumpable_inline_impl.hh
	M			src/io/dumper/dumpable_iohelper.hh
	M			src/io/dumper/dumper_compute.hh
	M			src/io/dumper/dumper_element_iterator.hh
	M			src/io/dumper/dumper_element_partition.hh
	M			src/io/dumper/dumper_elemental_field.hh
	M			src/io/dumper/dumper_filtered_connectivity.hh
	M			src/io/dumper/dumper_internal_material_field.hh
	M			src/io/dumper/dumper_iohelper.hh
	M			src/io/dumper/dumper_iohelper_paraview.hh
	M			src/io/dumper/dumper_material_padders.hh
	M			src/io/dumper/dumper_nodal_field.hh
	M			src/io/dumper/dumper_padding_helper.hh
	M			src/io/dumper/dumper_text.hh
	M			src/io/dumper/dumper_type_traits.hh
	M			src/io/mesh_io.cc
	M			src/io/mesh_io/mesh_io_diana.hh
	M			src/io/mesh_io/mesh_io_msh.cc
	M			src/io/mesh_io/mesh_io_msh_struct.cc
	M			src/io/mesh_io/mesh_io_msh_struct.hh
	M			src/io/parser/algebraic_parser.hh
	M			src/io/parser/cppargparse/cppargparse.cc
	M			src/io/parser/cppargparse/cppargparse_tmpl.hh
	M			src/io/parser/input_file_parser.hh
	M			src/io/parser/parameter_registry.cc
	M			src/io/parser/parameter_registry.hh
	M			src/io/parser/parsable.cc
	M			src/io/parser/parser.cc
	M			src/io/parser/parser.hh
	M			src/io/parser/parser_grammar_tmpl.hh
	M			src/io/parser/parser_input_files.cc
	M			src/io/parser/parser_real.cc
	M			src/io/parser/parser_tmpl.hh
	M			src/io/parser/parser_types.cc
	M			src/mesh/element_type_map.hh
	M			src/mesh/element_type_map_tmpl.hh
	M			src/mesh/group_manager.cc
	M			src/mesh/group_manager.hh
	M			src/mesh/mesh.cc
	M			src/mesh/mesh.hh
	M			src/mesh/mesh_accessor.hh
	M			src/mesh/mesh_data.hh
	M			src/mesh/mesh_data_tmpl.hh
	M			src/mesh/mesh_events.hh
	M			src/mesh/mesh_filter.hh
	M			src/mesh/mesh_global_data_updater.hh
	M			src/mesh/mesh_iterators.hh
	M			src/mesh/mesh_periodic.cc
	M			src/mesh/node_group.hh
	M			src/mesh/node_group_inline_impl.cc
	M			src/mesh_utils/cohesive_element_inserter.cc
	M			src/mesh_utils/cohesive_element_inserter.hh
	M			src/mesh_utils/cohesive_element_inserter_parallel.cc
	M			src/mesh_utils/global_ids_updater.cc
	M			src/mesh_utils/global_ids_updater.hh
	M			src/mesh_utils/mesh_partition.cc
	M			src/mesh_utils/mesh_partition.hh
	M			src/mesh_utils/mesh_partition/mesh_partition_mesh_data.hh
	M			src/mesh_utils/mesh_partition/mesh_partition_scotch.hh
	M			src/mesh_utils/mesh_utils.cc
	M			src/mesh_utils/mesh_utils.hh
	M			src/mesh_utils/mesh_utils_distribution.hh
	M			src/mesh_utils/mesh_utils_inline_impl.cc
	M			src/mesh_utils/mesh_utils_pbc.cc
	M			src/model/common/boundary_condition/boundary_condition.hh
	M			src/model/common/boundary_condition/boundary_condition_tmpl.hh
	M			src/model/common/dof_manager/dof_manager_default.cc
	M			src/model/common/dof_manager/dof_manager_default.hh
	M			src/model/common/dof_manager/dof_manager_default_inline_impl.cc
	M			src/model/common/dof_manager/dof_manager_petsc.hh
	M			src/model/common/integration_scheme/generalized_trapezoidal.cc
	M			src/model/common/integration_scheme/integration_scheme_1st_order.cc
	M			src/model/common/integration_scheme/integration_scheme_1st_order.hh
	M			src/model/common/integration_scheme/integration_scheme_2nd_order.cc
	M			src/model/common/integration_scheme/integration_scheme_2nd_order.hh
	M			src/model/common/integration_scheme/newmark-beta.cc
	M			src/model/common/integration_scheme/pseudo_time.cc
	M			src/model/common/model_solver.cc
	M			src/model/common/non_linear_solver/non_linear_solver.hh
	M			src/model/common/non_linear_solver/non_linear_solver_linear.cc
	M			src/model/common/non_linear_solver/non_linear_solver_linear.hh
	M			src/model/common/non_linear_solver/non_linear_solver_lumped.cc
	M			src/model/common/non_linear_solver/non_linear_solver_newton_raphson.hh
	M			src/model/common/non_linear_solver/non_linear_solver_petsc.cc
	P			src/model/common/non_linear_solver/non_linear_solver_petsc.hh Copied to src/model/solid_mechanics/materials/material_damage/material_anisotropic_damage.hh
	M			src/model/common/non_local_toolbox/base_weight_function_inline_impl.cc
	M			src/model/common/non_local_toolbox/neighborhoods_criterion_evaluation/neighborhood_max_criterion.hh
	M			src/model/common/non_local_toolbox/neighborhoods_criterion_evaluation/neighborhood_max_criterion_inline_impl.cc
	M			src/model/common/non_local_toolbox/non_local_manager.cc
	M			src/model/common/non_local_toolbox/non_local_neighborhood_base.cc
	M			src/model/common/solver_callback.hh
	M			src/model/common/time_step_solvers/time_step_solver_default_explicit.hh
	M			src/model/heat_transfer/heat_transfer_model.cc
	M			src/model/heat_transfer/heat_transfer_model.hh
	M			src/model/model_inline_impl.cc
	M			src/model/solid_mechanics/material.cc
	M			src/model/solid_mechanics/material.hh
	M			src/model/solid_mechanics/material_inline_impl.cc
	M			src/model/solid_mechanics/materials/internal_field.hh
	M			src/model/solid_mechanics/materials/internal_field_tmpl.hh
	A			src/model/solid_mechanics/materials/material_damage/material_anisotropic_damage.cc
	P			src/model/solid_mechanics/materials/material_damage/material_anisotropic_damage.hh Copied from src/model/common/non_linear_solver/non_linear_solver_petsc.hh
	A			src/model/solid_mechanics/materials/material_damage/material_anisotropic_damage_tmpl.hh
	M			src/model/solid_mechanics/materials/material_damage/material_damage.hh
	M			src/model/solid_mechanics/materials/material_damage/material_damage_tmpl.hh
	M			src/model/solid_mechanics/materials/material_damage/material_marigo.hh
	M			src/model/solid_mechanics/materials/material_damage/material_marigo_inline_impl.cc
	M			src/model/solid_mechanics/materials/material_damage/material_mazars_inline_impl.cc
	M			src/model/solid_mechanics/materials/material_elastic.cc
	M			src/model/solid_mechanics/materials/material_elastic.hh
	M			src/model/solid_mechanics/materials/material_elastic_inline_impl.cc
	M			src/model/solid_mechanics/materials/material_elastic_linear_anisotropic.cc
	M			src/model/solid_mechanics/materials/material_elastic_linear_anisotropic.hh
	M			src/model/solid_mechanics/materials/material_elastic_linear_anisotropic_inline_impl.cc
	M			src/model/solid_mechanics/materials/material_elastic_orthotropic.hh
	M			src/model/solid_mechanics/materials/material_embedded/material_reinforcement.hh
	M			src/model/solid_mechanics/materials/material_embedded/material_reinforcement_tmpl.hh
	M			src/model/solid_mechanics/materials/material_finite_deformation/material_neohookean.cc
	M			src/model/solid_mechanics/materials/material_plastic/material_linear_isotropic_hardening.cc
	M			src/model/solid_mechanics/materials/material_plastic/material_linear_isotropic_hardening.hh
	M			src/model/solid_mechanics/materials/material_plastic/material_linear_isotropic_hardening_inline_impl.cc
	M			src/model/solid_mechanics/materials/material_plastic/material_plastic_inline_impl.cc
	M			src/model/solid_mechanics/materials/material_thermal.cc
	M			src/model/solid_mechanics/materials/material_thermal.hh
	M			src/model/solid_mechanics/materials/material_viscoelastic/material_standard_linear_solid_deviatoric.cc
	M			src/model/solid_mechanics/materials/plane_stress_toolbox.hh
	M			src/model/solid_mechanics/materials/random_internal_field.hh
	M			src/model/solid_mechanics/materials/random_internal_field_tmpl.hh
	M			src/model/solid_mechanics/materials/weight_functions/remove_damaged_with_damage_rate_weight_function.hh
	M			src/model/solid_mechanics/materials/weight_functions/stress_based_weight_function.cc
	M			src/model/solid_mechanics/materials/weight_functions/stress_based_weight_function.hh
	M			src/model/solid_mechanics/solid_mechanics_model.cc
	M			src/model/solid_mechanics/solid_mechanics_model.hh
	M			src/model/solid_mechanics/solid_mechanics_model_cohesive/fragment_manager.cc
	M			src/model/solid_mechanics/solid_mechanics_model_cohesive/fragment_manager.hh
	M			src/model/solid_mechanics/solid_mechanics_model_cohesive/material_selector_cohesive.hh
	M			src/model/solid_mechanics/solid_mechanics_model_cohesive/materials/cohesive_internal_field.hh
	M			src/model/solid_mechanics/solid_mechanics_model_cohesive/materials/cohesive_internal_field_tmpl.hh
	M			src/model/solid_mechanics/solid_mechanics_model_cohesive/materials/constitutive_laws/material_cohesive_bilinear.hh
	M			src/model/solid_mechanics/solid_mechanics_model_cohesive/materials/constitutive_laws/material_cohesive_exponential.cc
	M			src/model/solid_mechanics/solid_mechanics_model_cohesive/materials/constitutive_laws/material_cohesive_exponential.hh
	M			src/model/solid_mechanics/solid_mechanics_model_cohesive/materials/constitutive_laws/material_cohesive_linear.cc
	M			src/model/solid_mechanics/solid_mechanics_model_cohesive/materials/constitutive_laws/material_cohesive_linear.hh
	M			src/model/solid_mechanics/solid_mechanics_model_cohesive/materials/constitutive_laws/material_cohesive_linear_fatigue.cc
	M			src/model/solid_mechanics/solid_mechanics_model_cohesive/materials/constitutive_laws/material_cohesive_linear_fatigue.hh
	M			src/model/solid_mechanics/solid_mechanics_model_cohesive/materials/constitutive_laws/material_cohesive_linear_friction.cc
	M			src/model/solid_mechanics/solid_mechanics_model_cohesive/materials/constitutive_laws/material_cohesive_linear_friction.hh
	M			src/model/solid_mechanics/solid_mechanics_model_cohesive/materials/constitutive_laws/material_cohesive_linear_inline_impl.cc
	M			src/model/solid_mechanics/solid_mechanics_model_cohesive/materials/constitutive_laws/material_cohesive_linear_uncoupled.cc
	M			src/model/solid_mechanics/solid_mechanics_model_cohesive/materials/constitutive_laws/material_cohesive_linear_uncoupled.hh
	M			src/model/solid_mechanics/solid_mechanics_model_cohesive/materials/material_cohesive.cc
	M			src/model/solid_mechanics/solid_mechanics_model_cohesive/materials/material_cohesive_inline_impl.cc
	M			src/model/solid_mechanics/solid_mechanics_model_cohesive/solid_mechanics_model_cohesive.cc
	M			src/model/solid_mechanics/solid_mechanics_model_cohesive/solid_mechanics_model_cohesive_inline_impl.cc
	M			src/model/solid_mechanics/solid_mechanics_model_cohesive/solid_mechanics_model_cohesive_parallel.cc
	M			src/model/solid_mechanics/solid_mechanics_model_embedded_interface/embedded_interface_intersector.hh
	M			src/model/solid_mechanics/solid_mechanics_model_embedded_interface/embedded_interface_model.cc
	M			src/model/solid_mechanics/solid_mechanics_model_embedded_interface/embedded_interface_model.hh
	M			src/model/solid_mechanics/solid_mechanics_model_event_handler.hh
	M			src/model/solid_mechanics/solid_mechanics_model_io.cc
	M			src/model/solid_mechanics/solid_mechanics_model_mass.cc
	M			src/model/solid_mechanics/solid_mechanics_model_material.cc
	M			src/model/structural_mechanics/structural_elements/structural_element_bernoulli_beam_3.hh
	M			src/model/structural_mechanics/structural_elements/structural_element_kirchhoff_shell.hh
	M			src/model/structural_mechanics/structural_mechanics_model.cc
	M			src/model/structural_mechanics/structural_mechanics_model_boundary.cc
	M			src/model/structural_mechanics/structural_mechanics_model_mass.cc
	M			src/solver/petsc_wrapper.hh
	M			src/solver/solver_petsc.hh
	M			src/solver/solver_vector.hh
	M			src/solver/solver_vector_default.cc
	M			src/solver/solver_vector_default.hh
	M			src/solver/solver_vector_default_tmpl.hh
	M			src/solver/solver_vector_petsc.hh
	M			src/solver/sparse_matrix.cc
	M			src/solver/sparse_matrix.hh
	M			src/solver/sparse_matrix_aij_inline_impl.cc
	M			src/solver/sparse_matrix_inline_impl.cc
	M			src/solver/sparse_matrix_petsc.cc
	M			src/solver/sparse_matrix_petsc.hh
	M			src/solver/sparse_solver.cc
	M			src/solver/sparse_solver.hh
	M			src/solver/sparse_solver_mumps.cc
	M			src/solver/sparse_solver_mumps.hh
	M			src/solver/terms_to_assemble.hh
	M			src/synchronizer/communication_buffer.hh
	M			src/synchronizer/communication_buffer_inline_impl.cc
	M			src/synchronizer/communication_descriptor_tmpl.hh
	M			src/synchronizer/communication_request.hh
	M			src/synchronizer/communication_tag.hh
	M			src/synchronizer/communications_tmpl.hh
	M			src/synchronizer/communicator_dummy_inline_impl.cc
	M			src/synchronizer/communicator_event_handler.hh
	M			src/synchronizer/communicator_mpi_inline_impl.cc
	M			src/synchronizer/data_accessor.cc
	M			src/synchronizer/data_accessor.hh
	M			src/synchronizer/dof_synchronizer.cc
	M			src/synchronizer/dof_synchronizer.hh
	M			src/synchronizer/dof_synchronizer_inline_impl.cc
	M			src/synchronizer/element_info_per_processor.cc
	M			src/synchronizer/element_info_per_processor.hh
	M			src/synchronizer/element_info_per_processor_tmpl.hh
	M			src/synchronizer/element_synchronizer.cc
	M			src/synchronizer/grid_synchronizer.cc
	M			src/synchronizer/master_element_info_per_processor.cc
	M			src/synchronizer/node_info_per_processor.hh
	M			src/synchronizer/node_synchronizer.cc
	M			src/synchronizer/node_synchronizer.hh
	M			src/synchronizer/periodic_node_synchronizer.hh
	M			src/synchronizer/synchronizer_registry.cc
	M			src/synchronizer/synchronizer_registry.hh
	M			src/synchronizer/synchronizer_tmpl.hh
	M			test/ci/Dockerfile
	A			test/ci/scripts/.arcconfig
	A			test/ci/scripts/.arclint
	A			test/ci/scripts/COPYING
	A			test/ci/scripts/COPYING.lesser
	D			test/ci/scripts/CTestResults.xml
	M			test/ci/scripts/harbomaster/__init__.py
	M			test/ci/scripts/harbomaster/arclint.py
	D			test/ci/scripts/harbomaster/ctestresults.py
	M			test/ci/scripts/harbomaster/hbm.py
	M			test/ci/scripts/harbomaster/results.py
	A			test/ci/scripts/harbomaster/testresults.py
	M			test/ci/scripts/hbm
	M			test/python_fe/__init__.py
	M			test/test_common/test_grid.cc
	M			test/test_common/test_iterators.cc
	M			test/test_common/test_tensors.cc
	M			test/test_fe_engine/py_engine/__init__.py
	M			test/test_fe_engine/py_engine/py_engine.py
	M			test/test_fe_engine/test_fe_engine_gauss_integration.cc
	M			test/test_fe_engine/test_fe_engine_precomputation.cc
	M			test/test_fe_engine/test_fe_engine_precomputation_bernoulli_3.cc
	M			test/test_fe_engine/test_integrate.cc
	M			test/test_geometry/test_segment_intersection_tetrahedron_4.cc
	M			test/test_gtest_main.cc
	M			test/test_gtest_utils.hh
	M			test/test_io/test_dumper/test_dumper.cc
	M			test/test_mesh/test_mesh_periodic.cc
	M			test/test_mesh_utils/test_mesh_iterators.cc
	M			test/test_model/patch_tests/patch_test_linear_anisotropic.cc
	M			test/test_model/patch_tests/patch_test_linear_fixture.hh
	M			test/test_model/test_common/test_dof_manager.cc
	M			test/test_model/test_common/test_model_solver/test_dof_manager_default.cc
	M			test/test_model/test_common/test_model_solver/test_model_solver.cc
	M			test/test_model/test_common/test_model_solver/test_model_solver_dynamic.cc
	M			test/test_model/test_common/test_model_solver/test_model_solver_dynamic.py
	M			test/test_model/test_common/test_model_solver/test_model_solver_dynamic_petsc.cc
	M			test/test_model/test_common/test_model_solver/test_model_solver_my_model.hh
	M			test/test_model/test_common/test_non_local_toolbox/plot_neighborhoods.py
	M			test/test_model/test_common/test_non_local_toolbox/test_build_neighborhood_parallel.cc
	M			test/test_model/test_common/test_non_local_toolbox/test_non_local_averaging.cc
	M			test/test_model/test_solid_mechanics_model/CMakeLists.txt
	M			test/test_model/test_solid_mechanics_model/test_cohesive/test_cohesive_fixture.hh
	M			test/test_model/test_solid_mechanics_model/test_cohesive/test_cohesive_insertion/test_cohesive_insertion_along_physical_surfaces.cc
	M			test/test_model/test_solid_mechanics_model/test_cohesive/test_cohesive_linear_friction/test_cohesive_friction.cc
	M			test/test_model/test_solid_mechanics_model/test_cohesive/test_materials/test_material_cohesive_fixture.hh
	M			test/test_model/test_solid_mechanics_model/test_cohesive/test_materials/test_material_cohesive_linear.cc
	M			test/test_model/test_solid_mechanics_model/test_energies/test_solid_mechanics_model_linear_elastic_potential_energy.cc
	M			test/test_model/test_solid_mechanics_model/test_materials/CMakeLists.txt
	M			test/test_model/test_solid_mechanics_model/test_materials/py_mazars.py
	M			test/test_model/test_solid_mechanics_model/test_materials/test_elastic_materials.cc
	M			test/test_model/test_solid_mechanics_model/test_materials/test_finite_def_materials.cc
	M			test/test_model/test_solid_mechanics_model/test_materials/test_local_material.cc
	M			test/test_model/test_solid_mechanics_model/test_materials/test_material_elasto_plastic_linear_isotropic_hardening/test_material_elasto_plastic_linear_isotropic_hardening.cc
	M			test/test_model/test_solid_mechanics_model/test_materials/test_material_fixtures.hh
	M			test/test_model/test_solid_mechanics_model/test_materials/test_material_mazars.cc
	M			test/test_model/test_solid_mechanics_model/test_materials/test_material_thermal.cc
	M			test/test_model/test_solid_mechanics_model/test_materials/test_material_viscoelastic/test_material_standard_linear_solid_deviatoric_relaxation.cc
	M			test/test_model/test_solid_mechanics_model/test_materials/test_material_viscoelastic_maxwell/test_material_viscoelastic_maxwell_relaxation.cc
	M			test/test_model/test_solid_mechanics_model/test_materials/test_plastic_materials.cc
	M			test/test_model/test_solid_mechanics_model/test_solid_mechanics_model_material_eigenstrain.cc
	M			test/test_model/test_structural_mechanics_model/test_structural_mechanics_model_bernoulli_beam_dynamics.cc
	M			test/test_python_interface/CMakeLists.txt
	M			test/test_python_interface/test_pybind.py
	M			test/test_solver/test_solver_petsc.cc
	M			test/test_solver/test_sparse_matrix_product.cc
	M			test/test_solver/test_sparse_solver_mumps.cc
	M			test/test_synchronizer/test_communicator.cc
	M			test/test_synchronizer/test_data_distribution.cc
	M			test/test_synchronizer/test_dof_synchronizer_communication.cc
	M			test/test_synchronizer/test_facet_synchronizer.cc
	M			test/test_synchronizer/test_grid_synchronizer.cc
	M			test/test_synchronizer/test_node_synchronizer.cc
	M			test/test_synchronizer/test_synchronizer_communication.cc
	M			third-party/cmake/gtest.cmake