Merge branch 'master' into features/eigen
83c24b94a0db
Actions

Authored by richart on Jan 16 2020, 18:52.

Description

Merge branch 'master' into features/eigen

Details

Committed

richart

Jan 16 2020, 18:52

Pushed

gitlab-richart

Jan 18 2021, 21:10

Parents

rAKAad3397a7d014: More work for eigen transition
rAKAf7fc4feca70a: Actually running the examples as tests

Branches

Unknown

Tags

Unknown

Event Timeline

richart committed rAKA83c24b94a0db: Merge branch 'master' into features/eigen (authored by richart).Jan 16 2020, 18:52

Merged Changes

This commit merges a very large number of changes. Only the first 50 are shown.

Commit	Author	Details	Committed
f7fc4feca70a	richart	Actually running the examples as tests	Jan 15 2020
eb1c624aba2f	richart	make the new_material a bit faster	Jan 15 2020
72bc1b60d6fa	richart	factorizing scatter/gather from dof_synchronizer to synchronizer_impl	Jan 15 2020
658b6fd7fa88	richart	adding detection of the mpiseq library	Jan 10 2020
b72970096de0	richart	tuple concat trick	Jan 10 2020
cdbd6f96b11e	richart	Seting policy for the <package>_ROOT variable in the environment	Dec 20 2019
3741ee66d19a	richart	Wrongly protected compilation	Dec 20 2019
38689942d5bb	richart	Bug fix in the export of the target akantu	Dec 18 2019
668db21aecb0	richart	mpi skip mpicxx	Dec 13 2019
0ff570ffbf37	richart	extanding SparseMatrix and DOFManager interface in python	Dec 13 2019
ffa47eb473d7	richart	Make the test work with older version of gtest	Dec 13 2019
093c0a728b0e	richart	Merge commit '77f80db265988ff43dd2ab40ac712b0ab8053711'	Dec 13 2019
77f80db26598	richart	A bit to aggressive with the clang-tidy	Dec 13 2019
74233cffde18	richart	Merge commit '7085e4eba3cb6bdc76ba56c87cd3b686039aefaf'	Dec 12 2019
7085e4eba3cb	richart	Added named_zip	Dec 12 2019
507f7dbccbdf	richart	tidied and formated version	Dec 12 2019
3889358d690a	richart	some cleaning to many class in the same file	Dec 12 2019
9af5e8823b34	richart	Merge branch 'master' of c4science:/diffusion/AKAPRIV/akantu-private	Dec 11 2019
238e081bfa3e	richart	The fix for clang breaks gcc	Dec 11 2019
b9311d8ff17e	frerot	fixed warning [-Wempty-body] in Mesh::read	Dec 11 2019
ff7c24cea62e	richart	bug fix to compile on clang	Dec 11 2019
586f5f155d7a	richart	Merge branch 'master' of gitlab.com:akantu/akantu	Dec 11 2019
699861af0ea7	richart	Merge commit '64aba083b7feb682b63ea7aba22d000b30666056'	Dec 11 2019
64aba083b7fe	richart	adding support for non gnu compilers	Dec 10 2019
451e39ec639b	richart	Adding named_tuples and string_literal	Dec 10 2019
d19afc22171d	richart	Correcting namespace + warnings	Dec 10 2019
c648795f225e	richart	trying to accelerate the ci	Dec 9 2019
c80efd72a820	richart	improving ci	Dec 9 2019
48349fadeece	richart	Add .gitlab-ci.yml	Dec 9 2019
3ad7addae7f2	richart	small improvements in ci	Dec 9 2019
74def707432e	richart	inceasing timeouts	Dec 9 2019
48535c34dff3	richart	cleaning a bit the repo	Dec 9 2019
fca35ee94278	richart	Merge branch 'master' of c4science.ch:/diffusion/AKAPRIV/akantu-private	Dec 9 2019
ea1f32bc5f12	richart	Merge commit 'd9766dec5fd1c5eb0b1bbaab9694dc44dcc74f15'	Dec 9 2019
d9766dec5fd1	richart	bug fix in the filter iterator	Dec 9 2019
60ed7290eaa8	richart	Solving the gtest download failing the second time	Dec 9 2019
5d55d5612076	richart	linting	Dec 9 2019
221e6ca74e8e	richart	changing the way to do filter adaptor	Dec 9 2019
0c5c265b6584	richart	correcting the tests	Dec 9 2019
3f594cbb3680	richart	flags to specify when akantu runs in docker	Dec 9 2019
f142b17e9176	richart	Simplifying the jobs since it fails between caches and makefiles...	Dec 6 2019
09b534cfadc6	richart	cleaning the readme	Dec 6 2019
2283629c888f	richart	wrong variable	Dec 5 2019
418f0cdcdd93	richart	separating the caches since the are running in parallel	Dec 5 2019
b578a0cb4fe7	richart	style typos in junit	Dec 5 2019
5d475fc77c44	richart	typo in reports	Dec 5 2019
ecfeb6b962e3	richart	working on the test reports	Dec 5 2019
5c6b97f4c8a2	richart	Configure seems ok ?	Dec 5 2019
f5b079a3431a	richart	configure does not produce same output as on test	Dec 5 2019
e853faf42385	richart	trying to figure out caches	Dec 5 2019

Changes (954)
Show All Changes

Very Large Commit

This commit is very large. Load each file individually.

		Path
M		.arcconfig
M		.arclint
A		.flake8
M		.gitignore
A		.gitlab-ci.yml
M		CMakeLists.txt
D		Dockerfile
M		Jenkinsfile
M		README
M		VERSION
M		cmake/AkantuCleaning.cmake
M		cmake/AkantuExampleMacros.cmake
M		cmake/AkantuExtraCompilationProfiles.cmake
M		cmake/AkantuInstall.cmake
M		cmake/AkantuMacros.cmake
M		cmake/AkantuSimulationMacros.cmake
M		cmake/AkantuTestsMacros.cmake
M		cmake/Modules/CMakePackagesSystem.cmake
M		cmake/Modules/CMakePackagesSystemPrivateFunctions.cmake
D		cmake/Modules/CorrectWindowsPaths.cmake
M		cmake/Modules/FindGMSH.cmake
M		cmake/Modules/FindMumps.cmake
M		cmake/Modules/FindPETSc.cmake
D		cmake/Modules/FindPackageMultipass.cmake
A		cmake/Modules/FindPythonLibsNew.cmake
D		cmake/Modules/ResolveCompilerPaths.cmake
M		cmake/akantu_environement.csh.in
M		cmake/akantu_environement.sh.in
M		cmake/akantu_test_driver.sh
M		cmake/libakantu/v3/printers.py
A		cmake/sanitize-blacklist.txt
M		doc/doxygen/CMakeLists.txt
M		doc/manual/manual-changelog.tex
M		doc/manual/manual-heattransfermodel.tex
M		doc/manual/manual-io.tex
M		doc/manual/manual-solidmechanicsmodel.tex
M		examples/boundary_conditions/predefined_bc/predefined_bc.cc
M		examples/boundary_conditions/predefined_bc/square.geo
M		examples/boundary_conditions/user_defined_bc/fine_mesh.geo
M		examples/boundary_conditions/user_defined_bc/user_defined_bc.cc
M		examples/cohesive_element/cohesive_extrinsic/cohesive_extrinsic.cc
M		examples/cohesive_element/cohesive_extrinsic/material.dat
M		examples/cohesive_element/cohesive_extrinsic_ig_tg/material.dat
M		examples/cohesive_element/cohesive_extrinsic_implicit/cohesive_extrinsic_implicit.cc
M		examples/cohesive_element/cohesive_intrinsic/cohesive_intrinsic.cc
M		examples/cohesive_element/cohesive_intrinsic/triangle.geo
M		examples/embedded/embedded.cc
M		examples/explicit/explicit_dynamic.cc
M		examples/heat_transfer/heat_transfer_static_2d.cc
M		examples/implicit/implicit_dynamic.cc
M		examples/io/dumper/CMakeLists.txt
M		examples/io/dumper/dumpable_interface.cc
M		examples/io/dumper/dumper_low_level.cc
M		examples/io/parser/example_parser.cc
M		examples/new_material/CMakeLists.txt
M		examples/new_material/barre_trou.geo
M		examples/new_material/local_material_damage.cc
M		examples/new_material/local_material_damage.hh
M		examples/new_material/local_material_damage_inline_impl.hh
M		examples/new_material/material.dat
M		examples/new_material/new_local_material.cc
A	(dir)	examples/new_material/viscoelastic_maxwell/
A		examples/new_material/viscoelastic_maxwell/CMakeLists.txt
A		examples/new_material/viscoelastic_maxwell/material_viscoelastic_maxwell.dat
A		examples/new_material/viscoelastic_maxwell/material_viscoelastic_maxwell_energies.cc
A		examples/new_material/viscoelastic_maxwell/material_viscoelastic_maxwell_mesh.geo
M		examples/parallel/CMakeLists.txt
M		examples/python/CMakeLists.txt
A	(dir)	examples/python/cohesive/
A		examples/python/cohesive/CMakeLists.txt
A		examples/python/cohesive/material.dat
A		examples/python/cohesive/plate.geo
A		examples/python/cohesive/plate.py
M		examples/python/custom-material/CMakeLists.txt
M		examples/python/custom-material/bi-material.py
M		examples/python/custom-material/custom-material.py
A		examples/python/dynamics/CMakeLists.txt
M		examples/python/dynamics/dynamics.py
A	(dir)	examples/python/eigen_modes/
A		examples/python/eigen_modes/CMakeLists.txt
A		examples/python/eigen_modes/eigen_modes.py
A		examples/python/eigen_modes/image_saver.py
A		examples/python/eigen_modes/material.dat
M		examples/python/plate-hole/CMakeLists.txt
M		examples/python/plate-hole/plate.py
A	(dir)	examples/python/stiffness_matrix/
A		examples/python/stiffness_matrix/CMakeLists.txt
A		examples/python/stiffness_matrix/material.dat
A		examples/python/stiffness_matrix/plate.geo
A		examples/python/stiffness_matrix/plate.msh
A		examples/python/stiffness_matrix/stiffness_matrix.py
M		examples/static/static.cc
M		extra_packages/extra-materials/src/material_FE2/material_FE2.cc
M		extra_packages/extra-materials/src/material_FE2/solid_mechanics_model_RVE.cc
M		extra_packages/extra-materials/src/material_FE2/solid_mechanics_model_RVE.hh
M		extra_packages/extra-materials/src/material_damage/material_brittle_inline_impl.cc
M		extra_packages/extra-materials/src/material_damage/material_damage_iterative.cc
M		extra_packages/extra-materials/src/material_damage/material_damage_iterative.hh
M		extra_packages/extra-materials/src/material_damage/material_damage_iterative_inline_impl.cc
M		extra_packages/extra-materials/src/material_damage/material_orthotropic_damage.hh
M		extra_packages/extra-materials/src/material_damage/material_orthotropic_damage_iterative.cc
M		extra_packages/extra-materials/src/material_damage/material_orthotropic_damage_iterative.hh
M		extra_packages/extra-materials/src/material_damage/material_orthotropic_damage_tmpl.hh
M		extra_packages/extra-materials/src/material_damage/material_vreepeerlings_inline_impl.cc
M		extra_packages/extra-materials/src/material_plastic/material_viscoplastic.cc
M		extra_packages/extra-materials/test/test_material_damage/test_material_damage_iterative_non_local_parallel.cc
M		extra_packages/extra-materials/test/test_material_damage/test_material_damage_iterative_non_local_serial.cc
M		extra_packages/igfem/src/element_class_igfem.hh
M		extra_packages/igfem/src/igfem_enrichment.cc
M		extra_packages/igfem/src/material_igfem/material_igfem_elastic.cc
M		extra_packages/igfem/src/material_igfem/material_igfem_inline_impl.cc
M		extra_packages/igfem/src/mesh_igfem_spherical_growing_gel_tmpl.hh
M		extra_packages/igfem/src/non_local_manager_igfem.cc
M		extra_packages/igfem/test/patch_tests/test_igfem_triangle_4.cc
M		extra_packages/igfem/test/patch_tests/test_igfem_triangle_5.cc
M		extra_packages/igfem/test/patch_tests/test_interface_position.cc
M		extra_packages/igfem/test/test_solid_mechanics_model_igfem/test_ASR_damage.cc
M		extra_packages/igfem/test/test_solid_mechanics_model_igfem/test_material_igfem_iterative_stiffness_reduction.cc
M		extra_packages/igfem/test/test_solid_mechanics_model_igfem/test_material_igfem_iterative_stiffness_reduction_damage_step_transfer.cc
M		extra_packages/igfem/test/test_solid_mechanics_model_igfem/test_material_igfem_iterative_stiffness_reduction_parallel.cc
M		extra_packages/igfem/test/test_solid_mechanics_model_igfem/test_solid_mechanics_model_igfem.cc
M		extra_packages/traction-at-split-node-contact/src/boundary_conditions/force_based_dirichlet.hh
M		extra_packages/traction-at-split-node-contact/src/common/synchronized_array.cc
M		extra_packages/traction-at-split-node-contact/src/functions/boundary_functions.cc
M		extra_packages/traction-at-split-node-contact/src/functions/boundary_functions.hh
M		extra_packages/traction-at-split-node-contact/src/ntn_contact/friction_laws/ntn_friclaw_coulomb_tmpl.hh
M		extra_packages/traction-at-split-node-contact/src/ntn_contact/friction_laws/ntn_friclaw_linear_cohesive_tmpl.hh
M		extra_packages/traction-at-split-node-contact/src/ntn_contact/friction_laws/ntn_friclaw_linear_slip_weakening_no_healing_tmpl.hh
M		extra_packages/traction-at-split-node-contact/src/ntn_contact/friction_laws/ntn_friclaw_linear_slip_weakening_tmpl.hh
M		extra_packages/traction-at-split-node-contact/src/ntn_contact/friction_regularisations/ntn_fricreg_no_regularisation.cc
M		extra_packages/traction-at-split-node-contact/src/ntn_contact/friction_regularisations/ntn_fricreg_rubin_ampuero.cc
M		extra_packages/traction-at-split-node-contact/src/ntn_contact/friction_regularisations/ntn_fricreg_simplified_prakash_clifton.cc
M		extra_packages/traction-at-split-node-contact/src/ntn_contact/friction_regularisations/ntn_fricreg_simplified_prakash_clifton.hh
M		extra_packages/traction-at-split-node-contact/src/ntn_contact/mIIasym_contact.cc
M		extra_packages/traction-at-split-node-contact/src/ntn_contact/ntn_base_contact.cc
M		extra_packages/traction-at-split-node-contact/src/ntn_contact/ntn_base_contact.hh
M		extra_packages/traction-at-split-node-contact/src/ntn_contact/ntn_base_contact_inline_impl.cc
M		extra_packages/traction-at-split-node-contact/src/ntn_contact/ntn_base_friction.cc
M		extra_packages/traction-at-split-node-contact/src/ntn_contact/ntn_base_friction.hh
M		extra_packages/traction-at-split-node-contact/src/ntn_contact/ntn_contact.cc
M		extra_packages/traction-at-split-node-contact/src/ntn_contact/ntn_initiation_function.hh
M		extra_packages/traction-at-split-node-contact/src/ntn_contact/ntrf_contact.cc
A		packages/akantu_iterators.cmake
M		packages/cgal.cmake
M		packages/core.cmake
M		packages/implicit.cmake
M		packages/mpi.cmake
M		packages/mumps.cmake
M		packages/petsc.cmake
M		packages/pybind11.cmake
M		packages/python_interface.cmake
A		packages/python_interpreter.cmake
M		packages/pythonlibs.cmake
M		packages/solid_mechanics.cmake
M		packages/structural_mechanics.cmake
M		python/CMakeLists.txt
A	(dir)	python/akantu/
A		python/akantu/__init__.py
A		python/py11_akantu.cc
A		python/py_aka_array.hh
A		python/py_aka_common.cc
A		python/py_aka_common.hh
A		python/py_aka_error.cc
A		python/py_aka_error.hh
A		python/py_akantu.cc
A		python/py_akantu.hh
A		python/py_boundary_conditions.cc
A		python/py_boundary_conditions.hh
A		python/py_dumpable.cc
A		python/py_dumpable.hh
A		python/py_fe_engine.cc
A		python/py_fe_engine.hh
A		python/py_group_manager.cc
A		python/py_group_manager.hh
A		python/py_heat_transfer_model.cc
A		python/py_heat_transfer_model.hh
A		python/py_material.cc
A		python/py_material.hh
A		python/py_mesh.cc
A		python/py_mesh.hh
A		python/py_model.cc
A		python/py_model.hh
A		python/py_parser.cc
A		python/py_parser.hh
A		python/py_solid_mechanics_model.cc
A		python/py_solid_mechanics_model.hh
A		python/py_solid_mechanics_model_cohesive.cc
A		python/py_solid_mechanics_model_cohesive.hh
D		python/setup.py.in
D		python/swig
D		python/swig/aka_array.i
D		python/swig/aka_common.i
D		python/swig/aka_csr.i
D		python/swig/akantu.i
D		python/swig/communicator.i
D		python/swig/fe_engine.i
D		python/swig/heat_transfer_model.i
D		python/swig/load_functions.i
D		python/swig/material.i
D		python/swig/mesh.i
D		python/swig/mesh_utils.i
D		python/swig/model.i
D		python/swig/numpy.i
D		python/swig/parser.i
D		python/swig/solid_mechanics_model.i
D		python/swig/solid_mechanics_model_cohesive.i
D		python/swig/sparse_matrix.i
D		python/swig/structural_mechanics_model.i
M		src/CMakeLists.txt
M		src/common/aka_array.hh
A		src/common/aka_array_printer.hh
M		src/common/aka_array_tmpl.hh
M		src/common/aka_bbox.hh
M		src/common/aka_blas_lapack.hh
M		src/common/aka_circular_array.hh
M		src/common/aka_common.cc
M		src/common/aka_common.hh
M		src/common/aka_common_inline_impl.cc
D		src/common/aka_compatibilty_with_cpp_standard.hh
M		src/common/aka_csr.hh
M		src/common/aka_element_classes_info.hh.in
M		src/common/aka_element_classes_info_inline_impl.cc
M		src/common/aka_enum_macros.hh
M		src/common/aka_error.cc
M		src/common/aka_error.hh
M		src/common/aka_extern.cc
M		src/common/aka_factory.hh
M		src/common/aka_fwd.hh
M		src/common/aka_grid_dynamic.hh
D		src/common/aka_iterators.hh
M		src/common/aka_math.cc
M		src/common/aka_math.hh
M		src/common/aka_math_tmpl.hh
M		src/common/aka_memory.cc
M		src/common/aka_memory.hh
M		src/common/aka_random_generator.hh
M		src/common/aka_safe_enum.hh
D		src/common/aka_static_if.hh
M		src/common/aka_static_memory.cc
M		src/common/aka_typelist.hh
M		src/common/aka_types.hh
M		src/common/aka_visitor.hh
M		src/common/aka_voigthelper.cc
M		src/common/aka_voigthelper.hh
M		src/common/aka_voigthelper_tmpl.hh
M		src/fe_engine/element.hh
M		src/fe_engine/element_classes/element_class_hermite_inline_impl.cc
M		src/fe_engine/element_classes/element_class_hexahedron_20_inline_impl.cc
M		src/fe_engine/element_classes/element_class_kirchhoff_shell_inline_impl.cc
M		src/fe_engine/element_classes/element_class_triangle_6_inline_impl.cc
M		src/fe_engine/fe_engine.cc
M		src/fe_engine/fe_engine.hh
M		src/fe_engine/fe_engine_inline_impl.cc
M		src/fe_engine/fe_engine_template.hh
M		src/fe_engine/fe_engine_template_cohesive.cc
M		src/fe_engine/fe_engine_template_tmpl.hh
M		src/fe_engine/fe_engine_template_tmpl_field.hh
M		src/fe_engine/fe_engine_template_tmpl_struct.hh
M		src/fe_engine/geometrical_element_property.cc
M		src/fe_engine/geometrical_element_property.hh
M		src/fe_engine/integration_point.hh
M		src/fe_engine/integrator.hh
M		src/fe_engine/integrator_gauss.hh
M		src/fe_engine/integrator_gauss_inline_impl.cc
M		src/fe_engine/interpolation_element_tmpl.hh
M		src/fe_engine/shape_cohesive.hh
M		src/fe_engine/shape_cohesive_inline_impl.cc
M		src/fe_engine/shape_functions.cc
M		src/fe_engine/shape_functions.hh
M		src/fe_engine/shape_lagrange.hh
M		src/fe_engine/shape_lagrange_base.cc
M		src/fe_engine/shape_lagrange_base.hh
M		src/fe_engine/shape_lagrange_inline_impl.cc
M		src/fe_engine/shape_structural.cc
M		src/fe_engine/shape_structural.hh
M		src/fe_engine/shape_structural_inline_impl.cc
M		src/geometry/aabb_primitives/aabb_primitive.cc
M		src/geometry/aabb_primitives/aabb_primitive.hh
M		src/geometry/aabb_primitives/line_arc.hh
M		src/geometry/aabb_primitives/tetrahedron.hh
M		src/geometry/aabb_primitives/triangle.hh
M		src/geometry/geom_helper_functions.hh
M		src/geometry/mesh_abstract_intersector.hh
M		src/geometry/mesh_abstract_intersector_tmpl.hh
M		src/geometry/mesh_geom_abstract.hh
M		src/geometry/mesh_geom_common.hh
M		src/geometry/mesh_geom_factory.hh
M		src/geometry/mesh_geom_factory_tmpl.hh
M		src/geometry/mesh_geom_intersector.hh
M		src/geometry/mesh_geom_intersector_tmpl.hh
M		src/geometry/mesh_segment_intersector.hh
M		src/geometry/mesh_sphere_intersector.hh
M		src/geometry/mesh_sphere_intersector_tmpl.hh
M		src/geometry/tree_type_helper.hh
M		src/io/dumper/dumpable.cc
M		src/io/dumper/dumpable_dummy.hh
M		src/io/dumper/dumpable_inline_impl.hh
M		src/io/dumper/dumpable_iohelper.hh
M		src/io/dumper/dumper_compute.hh
M		src/io/dumper/dumper_element_iterator.hh
M		src/io/dumper/dumper_element_partition.hh
M		src/io/dumper/dumper_elemental_field.hh
M		src/io/dumper/dumper_field.hh
M		src/io/dumper/dumper_filtered_connectivity.hh
M		src/io/dumper/dumper_generic_elemental_field.hh
M		src/io/dumper/dumper_homogenizing_field.hh
M		src/io/dumper/dumper_internal_material_field.hh
M		src/io/dumper/dumper_iohelper.cc
M		src/io/dumper/dumper_iohelper.hh
M		src/io/dumper/dumper_iohelper_paraview.cc
M		src/io/dumper/dumper_iohelper_paraview.hh
M		src/io/dumper/dumper_material_padders.hh
M		src/io/dumper/dumper_nodal_field.hh
M		src/io/dumper/dumper_padding_helper.hh
M		src/io/dumper/dumper_text.cc
M		src/io/dumper/dumper_text.hh
M		src/io/dumper/dumper_type_traits.hh
M		src/io/mesh_io.cc
M		src/io/mesh_io.hh
M		src/io/mesh_io/mesh_io_diana.hh
M		src/io/mesh_io/mesh_io_msh.cc
M		src/io/mesh_io/mesh_io_msh.hh
M		src/io/mesh_io/mesh_io_msh_struct.cc
M		src/io/mesh_io/mesh_io_msh_struct.hh
M		src/io/parser/algebraic_parser.hh
M		src/io/parser/cppargparse/cppargparse.cc
M		src/io/parser/cppargparse/cppargparse.hh
M		src/io/parser/cppargparse/cppargparse_tmpl.hh
M		src/io/parser/input_file_parser.hh
M		src/io/parser/parameter_registry.cc
M		src/io/parser/parameter_registry.hh
M		src/io/parser/parameter_registry_tmpl.hh
M		src/io/parser/parsable.cc
M		src/io/parser/parser.cc
M		src/io/parser/parser.hh
M		src/io/parser/parser_grammar_tmpl.hh
M		src/io/parser/parser_input_files.cc
M		src/io/parser/parser_real.cc
M		src/io/parser/parser_tmpl.hh
M		src/io/parser/parser_types.cc
M		src/mesh/element_group.cc
M		src/mesh/element_group.hh
M		src/mesh/element_type_map.hh
M		src/mesh/element_type_map_tmpl.hh
M		src/mesh/group_manager.cc
M		src/mesh/group_manager.hh
M		src/mesh/group_manager_inline_impl.cc
M		src/mesh/mesh.cc
M		src/mesh/mesh.hh
M		src/mesh/mesh_accessor.hh
M		src/mesh/mesh_data.hh
M		src/mesh/mesh_data_tmpl.hh
M		src/mesh/mesh_events.hh
M		src/mesh/mesh_filter.hh
M		src/mesh/mesh_global_data_updater.hh
M		src/mesh/mesh_inline_impl.cc
M		src/mesh/mesh_iterators.hh
M		src/mesh/mesh_periodic.cc
M		src/mesh/node_group.cc
M		src/mesh/node_group.hh
M		src/mesh/node_group_inline_impl.cc
M		src/mesh_utils/cohesive_element_inserter.cc
M		src/mesh_utils/cohesive_element_inserter.hh
M		src/mesh_utils/cohesive_element_inserter_inline_impl.cc
M		src/mesh_utils/cohesive_element_inserter_parallel.cc
M		src/mesh_utils/global_ids_updater.cc
M		src/mesh_utils/global_ids_updater.hh
M		src/mesh_utils/global_ids_updater_inline_impl.cc
M		src/mesh_utils/mesh_partition.cc
M		src/mesh_utils/mesh_partition.hh
M		src/mesh_utils/mesh_partition/mesh_partition_mesh_data.cc
M		src/mesh_utils/mesh_partition/mesh_partition_mesh_data.hh
M		src/mesh_utils/mesh_partition/mesh_partition_scotch.cc
M		src/mesh_utils/mesh_partition/mesh_partition_scotch.hh
M		src/mesh_utils/mesh_utils.cc
M		src/mesh_utils/mesh_utils.hh
M		src/mesh_utils/mesh_utils_distribution.hh
M		src/mesh_utils/mesh_utils_inline_impl.cc
M		src/mesh_utils/mesh_utils_pbc.cc
D		src/model/boundary_condition.hh
D		src/model/boundary_condition_functor.hh
D		src/model/boundary_condition_functor_inline_impl.cc
D		src/model/boundary_condition_python_functor.cc
D		src/model/boundary_condition_python_functor.hh
D		src/model/boundary_condition_tmpl.hh
A	(dir)	src/model/common/boundary_condition/
A		src/model/common/boundary_condition/boundary_condition.hh
A		src/model/common/boundary_condition/boundary_condition_functor.hh
A		src/model/common/boundary_condition/boundary_condition_functor_inline_impl.cc
A		src/model/common/boundary_condition/boundary_condition_tmpl.hh
A	(dir)	src/model/common/dof_manager/
A		src/model/common/dof_manager/dof_manager.cc
A		src/model/common/dof_manager/dof_manager.hh
A		src/model/common/dof_manager/dof_manager_default.cc
A		src/model/common/dof_manager/dof_manager_default.hh
A		src/model/common/dof_manager/dof_manager_default_inline_impl.cc
A		src/model/common/dof_manager/dof_manager_inline_impl.cc
A		src/model/common/dof_manager/dof_manager_petsc.cc
A		src/model/common/dof_manager/dof_manager_petsc.hh
A	(dir)	src/model/common/integration_scheme/
A		src/model/common/integration_scheme/generalized_trapezoidal.cc
A		src/model/common/integration_scheme/generalized_trapezoidal.hh
A		src/model/common/integration_scheme/integration_scheme.cc
A		src/model/common/integration_scheme/integration_scheme.hh
A		src/model/common/integration_scheme/integration_scheme_1st_order.cc
A		src/model/common/integration_scheme/integration_scheme_1st_order.hh
V		src/model/{common ← }/integration_scheme/integration_scheme_2nd_order.cc
A		src/model/common/integration_scheme/integration_scheme_2nd_order.hh
A		src/model/common/integration_scheme/newmark-beta.cc
V		src/model/{common ← }/integration_scheme/newmark-beta.hh
A		src/model/common/integration_scheme/pseudo_time.cc
V		src/model/{common ← }/integration_scheme/pseudo_time.hh
A		src/model/common/model_solver.cc
A		src/model/common/model_solver.hh
V		src/model/common/{ → non_local_toolbox}/neighborhood_base.cc
V		src/model/common/{ → non_local_toolbox}/neighborhood_base.hh
V		src/model/common/{ → non_local_toolbox}/neighborhood_base_inline_impl.cc
D		src/model/common/neighborhoods_criterion_evaluation
D		src/model/common/neighborhoods_criterion_evaluation/neighborhood_max_criterion.cc
D		src/model/common/neighborhoods_criterion_evaluation/neighborhood_max_criterion.hh
D		src/model/common/neighborhoods_criterion_evaluation/neighborhood_max_criterion_inline_impl.cc
A	(dir)	src/model/common/non_linear_solver/
A		src/model/common/non_linear_solver/non_linear_solver.cc
A		src/model/common/non_linear_solver/non_linear_solver.hh
A		src/model/common/non_linear_solver/non_linear_solver_default.hh
A		src/model/common/non_linear_solver/non_linear_solver_linear.cc
A		src/model/common/non_linear_solver/non_linear_solver_linear.hh
A		src/model/common/non_linear_solver/non_linear_solver_lumped.cc
A		src/model/common/non_linear_solver/non_linear_solver_lumped.hh
A		src/model/common/non_linear_solver/non_linear_solver_newton_raphson.cc
A		src/model/common/non_linear_solver/non_linear_solver_newton_raphson.hh
A		src/model/common/non_linear_solver/non_linear_solver_petsc.cc
A		src/model/common/non_linear_solver/non_linear_solver_petsc.hh
M		src/model/common/non_local_toolbox/base_weight_function_inline_impl.cc
V		src/model/common/{non_local_toolbox ← }/neighborhood_base.cc
V		src/model/common/{non_local_toolbox ← }/neighborhood_base.hh
V		src/model/common/{non_local_toolbox ← }/neighborhood_base_inline_impl.cc
A	(dir)	src/model/common/non_local_toolbox/neighborhoods_criterion_evaluation/
A		src/model/common/non_local_toolbox/neighborhoods_criterion_evaluation/neighborhood_max_criterion.cc
A		src/model/common/non_local_toolbox/neighborhoods_criterion_evaluation/neighborhood_max_criterion.hh
A		src/model/common/non_local_toolbox/neighborhoods_criterion_evaluation/neighborhood_max_criterion_inline_impl.cc
M		src/model/common/non_local_toolbox/non_local_manager.cc
M		src/model/common/non_local_toolbox/non_local_neighborhood_base.cc
M		src/model/common/non_local_toolbox/non_local_neighborhood_inline_impl.cc
M		src/model/common/non_local_toolbox/non_local_neighborhood_tmpl.hh
V		src/model/{common ← }/solver_callback.cc
A		src/model/common/solver_callback.hh
A	(dir)	src/model/common/time_step_solvers/
A		src/model/common/time_step_solvers/time_step_solver.cc
A		src/model/common/time_step_solvers/time_step_solver.hh
A		src/model/common/time_step_solvers/time_step_solver_default.cc
A		src/model/common/time_step_solvers/time_step_solver_default.hh
A		src/model/common/time_step_solvers/time_step_solver_default_explicit.hh
D		src/model/dof_manager.cc
D		src/model/dof_manager.hh
D		src/model/dof_manager_default.cc
D		src/model/dof_manager_default.hh
D		src/model/dof_manager_default_inline_impl.cc
D		src/model/dof_manager_inline_impl.cc
D		src/model/dof_manager_petsc.cc
D		src/model/dof_manager_petsc.hh
M		src/model/heat_transfer/heat_transfer_model.cc
M		src/model/heat_transfer/heat_transfer_model.hh
D		src/model/integration_scheme
D		src/model/integration_scheme/generalized_trapezoidal.cc
D		src/model/integration_scheme/generalized_trapezoidal.hh
D		src/model/integration_scheme/integration_scheme.cc
D		src/model/integration_scheme/integration_scheme.hh
D		src/model/integration_scheme/integration_scheme_1st_order.cc
D		src/model/integration_scheme/integration_scheme_1st_order.hh
V		src/model/{ → common}/integration_scheme/integration_scheme_2nd_order.cc
D		src/model/integration_scheme/integration_scheme_2nd_order.hh
D		src/model/integration_scheme/newmark-beta.cc
V		src/model/{ → common}/integration_scheme/newmark-beta.hh
D		src/model/integration_scheme/pseudo_time.cc
V		src/model/{ → common}/integration_scheme/pseudo_time.hh
M		src/model/model.cc
M		src/model/model.hh
M		src/model/model_inline_impl.cc
M		src/model/model_options.hh
D		src/model/model_solver.cc
D		src/model/model_solver.hh
D		src/model/non_linear_solver.cc
D		src/model/non_linear_solver.hh
D		src/model/non_linear_solver_callback.hh
D		src/model/non_linear_solver_default.hh
D		src/model/non_linear_solver_linear.cc
D		src/model/non_linear_solver_linear.hh
D		src/model/non_linear_solver_lumped.cc
D		src/model/non_linear_solver_lumped.hh
D		src/model/non_linear_solver_newton_raphson.cc
D		src/model/non_linear_solver_newton_raphson.hh
M		src/model/solid_mechanics/material.cc
M		src/model/solid_mechanics/material.hh
M		src/model/solid_mechanics/material_inline_impl.cc
M		src/model/solid_mechanics/materials/internal_field.hh
M		src/model/solid_mechanics/materials/internal_field_tmpl.hh
A		src/model/solid_mechanics/materials/material_damage/material_anisotropic_damage.cc
A		src/model/solid_mechanics/materials/material_damage/material_anisotropic_damage.hh
A		src/model/solid_mechanics/materials/material_damage/material_anisotropic_damage_tmpl.hh
M		src/model/solid_mechanics/materials/material_damage/material_damage.hh
M		src/model/solid_mechanics/materials/material_damage/material_damage_tmpl.hh
M		src/model/solid_mechanics/materials/material_damage/material_marigo.hh
M		src/model/solid_mechanics/materials/material_damage/material_marigo_inline_impl.cc
M		src/model/solid_mechanics/materials/material_damage/material_mazars_inline_impl.cc
M		src/model/solid_mechanics/materials/material_elastic.cc
M		src/model/solid_mechanics/materials/material_elastic.hh
M		src/model/solid_mechanics/materials/material_elastic_inline_impl.cc
M		src/model/solid_mechanics/materials/material_elastic_linear_anisotropic.cc
M		src/model/solid_mechanics/materials/material_elastic_linear_anisotropic.hh
M		src/model/solid_mechanics/materials/material_elastic_linear_anisotropic_inline_impl.cc
M		src/model/solid_mechanics/materials/material_elastic_orthotropic.cc
M		src/model/solid_mechanics/materials/material_elastic_orthotropic.hh
M		src/model/solid_mechanics/materials/material_embedded/material_reinforcement.hh
M		src/model/solid_mechanics/materials/material_embedded/material_reinforcement_tmpl.hh
M		src/model/solid_mechanics/materials/material_finite_deformation/material_neohookean.cc
M		src/model/solid_mechanics/materials/material_finite_deformation/material_neohookean.hh
M		src/model/solid_mechanics/materials/material_plastic/material_linear_isotropic_hardening.cc
M		src/model/solid_mechanics/materials/material_plastic/material_linear_isotropic_hardening.hh
M		src/model/solid_mechanics/materials/material_plastic/material_linear_isotropic_hardening_inline_impl.cc
M		src/model/solid_mechanics/materials/material_plastic/material_plastic.cc
M		src/model/solid_mechanics/materials/material_plastic/material_plastic.hh
M		src/model/solid_mechanics/materials/material_plastic/material_plastic_inline_impl.cc
D		src/model/solid_mechanics/materials/material_python
D		src/model/solid_mechanics/materials/material_python/material_python.cc
D		src/model/solid_mechanics/materials/material_python/material_python.hh
M		src/model/solid_mechanics/materials/material_thermal.cc
M		src/model/solid_mechanics/materials/material_thermal.hh
M		src/model/solid_mechanics/materials/material_viscoelastic/material_standard_linear_solid_deviatoric.cc
A		src/model/solid_mechanics/materials/material_viscoelastic/material_viscoelastic_maxwell.cc
A		src/model/solid_mechanics/materials/material_viscoelastic/material_viscoelastic_maxwell.hh
M		src/model/solid_mechanics/materials/plane_stress_toolbox.hh
M		src/model/solid_mechanics/materials/random_internal_field.hh
M		src/model/solid_mechanics/materials/random_internal_field_tmpl.hh
M		src/model/solid_mechanics/materials/weight_functions/remove_damaged_weight_function_inline_impl.cc
M		src/model/solid_mechanics/materials/weight_functions/remove_damaged_with_damage_rate_weight_function.hh
M		src/model/solid_mechanics/materials/weight_functions/stress_based_weight_function.cc
M		src/model/solid_mechanics/materials/weight_functions/stress_based_weight_function.hh
M		src/model/solid_mechanics/solid_mechanics_model.cc
M		src/model/solid_mechanics/solid_mechanics_model.hh
M		src/model/solid_mechanics/solid_mechanics_model_cohesive/fragment_manager.cc
M		src/model/solid_mechanics/solid_mechanics_model_cohesive/fragment_manager.hh
M		src/model/solid_mechanics/solid_mechanics_model_cohesive/material_selector_cohesive.hh
M		src/model/solid_mechanics/solid_mechanics_model_cohesive/materials/cohesive_internal_field.hh
M		src/model/solid_mechanics/solid_mechanics_model_cohesive/materials/cohesive_internal_field_tmpl.hh
M		src/model/solid_mechanics/solid_mechanics_model_cohesive/materials/constitutive_laws/material_cohesive_bilinear.hh
M		src/model/solid_mechanics/solid_mechanics_model_cohesive/materials/constitutive_laws/material_cohesive_exponential.cc
M		src/model/solid_mechanics/solid_mechanics_model_cohesive/materials/constitutive_laws/material_cohesive_exponential.hh
M		src/model/solid_mechanics/solid_mechanics_model_cohesive/materials/constitutive_laws/material_cohesive_linear.cc
M		src/model/solid_mechanics/solid_mechanics_model_cohesive/materials/constitutive_laws/material_cohesive_linear.hh
M		src/model/solid_mechanics/solid_mechanics_model_cohesive/materials/constitutive_laws/material_cohesive_linear_fatigue.cc
M		src/model/solid_mechanics/solid_mechanics_model_cohesive/materials/constitutive_laws/material_cohesive_linear_fatigue.hh
M		src/model/solid_mechanics/solid_mechanics_model_cohesive/materials/constitutive_laws/material_cohesive_linear_friction.cc
M		src/model/solid_mechanics/solid_mechanics_model_cohesive/materials/constitutive_laws/material_cohesive_linear_friction.hh
M		src/model/solid_mechanics/solid_mechanics_model_cohesive/materials/constitutive_laws/material_cohesive_linear_inline_impl.cc
M		src/model/solid_mechanics/solid_mechanics_model_cohesive/materials/constitutive_laws/material_cohesive_linear_uncoupled.cc
M		src/model/solid_mechanics/solid_mechanics_model_cohesive/materials/constitutive_laws/material_cohesive_linear_uncoupled.hh
M		src/model/solid_mechanics/solid_mechanics_model_cohesive/materials/material_cohesive.cc
M		src/model/solid_mechanics/solid_mechanics_model_cohesive/materials/material_cohesive.hh
M		src/model/solid_mechanics/solid_mechanics_model_cohesive/materials/material_cohesive_inline_impl.cc
M		src/model/solid_mechanics/solid_mechanics_model_cohesive/solid_mechanics_model_cohesive.cc
M		src/model/solid_mechanics/solid_mechanics_model_cohesive/solid_mechanics_model_cohesive.hh
M		src/model/solid_mechanics/solid_mechanics_model_cohesive/solid_mechanics_model_cohesive_inline_impl.cc
M		src/model/solid_mechanics/solid_mechanics_model_cohesive/solid_mechanics_model_cohesive_parallel.cc
M		src/model/solid_mechanics/solid_mechanics_model_embedded_interface/embedded_interface_intersector.cc
M		src/model/solid_mechanics/solid_mechanics_model_embedded_interface/embedded_interface_intersector.hh
M		src/model/solid_mechanics/solid_mechanics_model_embedded_interface/embedded_interface_model.cc
M		src/model/solid_mechanics/solid_mechanics_model_embedded_interface/embedded_interface_model.hh
M		src/model/solid_mechanics/solid_mechanics_model_event_handler.hh
M		src/model/solid_mechanics/solid_mechanics_model_inline_impl.cc
M		src/model/solid_mechanics/solid_mechanics_model_io.cc
M		src/model/solid_mechanics/solid_mechanics_model_mass.cc
M		src/model/solid_mechanics/solid_mechanics_model_material.cc
V		src/model/{ → common}/solver_callback.cc
D		src/model/solver_callback.hh
M		src/model/structural_mechanics/structural_elements/structural_element_bernoulli_beam_3.hh
M		src/model/structural_mechanics/structural_elements/structural_element_kirchhoff_shell.hh
M		src/model/structural_mechanics/structural_mechanics_model.cc
M		src/model/structural_mechanics/structural_mechanics_model.hh
M		src/model/structural_mechanics/structural_mechanics_model_boundary.cc
M		src/model/structural_mechanics/structural_mechanics_model_mass.cc
D		src/model/time_step_solver.hh
D		src/model/time_step_solvers
D		src/model/time_step_solvers/time_step_solver.cc
D		src/model/time_step_solvers/time_step_solver_default.cc
D		src/model/time_step_solvers/time_step_solver_default.hh
D		src/model/time_step_solvers/time_step_solver_default_explicit.hh
D		src/model/time_step_solvers/time_step_solver_default_solver_callback.hh
D		src/python
D		src/python/python_functor.cc
D		src/python/python_functor.hh
D		src/python/python_functor_inline_impl.cc
M		src/solver/petsc_wrapper.hh
M		src/solver/solver_petsc.cc
M		src/solver/solver_petsc.hh
A		src/solver/solver_vector.hh
A		src/solver/solver_vector_default.cc
A		src/solver/solver_vector_default.hh
A		src/solver/solver_vector_default_tmpl.hh
A		src/solver/solver_vector_distributed.cc
A		src/solver/solver_vector_distributed.hh
A		src/solver/solver_vector_petsc.cc
A		src/solver/solver_vector_petsc.hh
M		src/solver/sparse_matrix.cc
M		src/solver/sparse_matrix.hh
M		src/solver/sparse_matrix_aij.cc
M		src/solver/sparse_matrix_aij.hh
M		src/solver/sparse_matrix_aij_inline_impl.cc
M		src/solver/sparse_matrix_inline_impl.cc
M		src/solver/sparse_matrix_petsc.cc
M		src/solver/sparse_matrix_petsc.hh
M		src/solver/sparse_solver.cc
M		src/solver/sparse_solver.hh
M		src/solver/sparse_solver_inline_impl.cc
M		src/solver/sparse_solver_mumps.cc
M		src/solver/sparse_solver_mumps.hh
M		src/solver/terms_to_assemble.hh
M		src/synchronizer/communication_buffer.hh
M		src/synchronizer/communication_buffer_inline_impl.cc
M		src/synchronizer/communication_descriptor_tmpl.hh
M		src/synchronizer/communication_request.hh
M		src/synchronizer/communication_tag.hh
M		src/synchronizer/communications_tmpl.hh
M		src/synchronizer/communicator.cc
M		src/synchronizer/communicator.hh
M		src/synchronizer/communicator_dummy_inline_impl.cc
M		src/synchronizer/communicator_event_handler.hh
M		src/synchronizer/communicator_inline_impl.hh
M		src/synchronizer/communicator_mpi_inline_impl.cc
M		src/synchronizer/data_accessor.cc
M		src/synchronizer/data_accessor.hh
M		src/synchronizer/dof_synchronizer.cc
M		src/synchronizer/dof_synchronizer.hh
M		src/synchronizer/dof_synchronizer_inline_impl.cc
M		src/synchronizer/element_info_per_processor.cc
M		src/synchronizer/element_info_per_processor.hh
M		src/synchronizer/element_info_per_processor_tmpl.hh
M		src/synchronizer/element_synchronizer.cc
M		src/synchronizer/facet_synchronizer.cc
M		src/synchronizer/grid_synchronizer.cc
M		src/synchronizer/master_element_info_per_processor.cc
M		src/synchronizer/mpi_communicator_data.hh
M		src/synchronizer/node_info_per_processor.cc
M		src/synchronizer/node_info_per_processor.hh
M		src/synchronizer/node_synchronizer.cc
M		src/synchronizer/node_synchronizer.hh
A		src/synchronizer/node_synchronizer_inline_impl.cc
M		src/synchronizer/periodic_node_synchronizer.hh
M		src/synchronizer/synchronizer_impl.hh
M		src/synchronizer/synchronizer_impl_tmpl.hh
M		src/synchronizer/synchronizer_registry.cc
M		src/synchronizer/synchronizer_registry.hh
M		src/synchronizer/synchronizer_tmpl.hh
M		test/CMakeLists.txt
A	(dir)	test/ci/
A		test/ci/ctest2junit.xsl
A	(dir)	test/ci/debian.testing/
A		test/ci/debian.testing/Dockerfile
A	(dir)	test/ci/scripts/
A		test/ci/scripts/.arcconfig
A		test/ci/scripts/.arclint
A		test/ci/scripts/COPYING
A		test/ci/scripts/COPYING.lesser
A	(dir)	test/ci/scripts/harbomaster/
A		test/ci/scripts/harbomaster/__init__.py
A		test/ci/scripts/harbomaster/arclint.py
A		test/ci/scripts/harbomaster/hbm.py
A		test/ci/scripts/harbomaster/results.py
A		test/ci/scripts/harbomaster/testresults.py
A		test/ci/scripts/hbm
A	(dir)	test/ci/ubuntu.lts/
A		test/ci/ubuntu.lts/Dockerfile
M		test/python_fe/__init__.py
M		test/test_common/CMakeLists.txt
M		test/test_common/test_array.cc
M		test/test_common/test_grid.cc
M		test/test_common/test_iterators.cc
M		test/test_common/test_tensors.cc
A		test/test_common/test_voigt_helper.cc
M		test/test_fe_engine/CMakeLists.txt
M		test/test_fe_engine/py_engine/__init__.py
M		test/test_fe_engine/py_engine/py_engine.py
D		test/test_fe_engine/pybind11_akantu.cc
D		test/test_fe_engine/pybind11_akantu.hh
M		test/test_fe_engine/test_fe_engine_fixture.hh
M		test/test_fe_engine/test_fe_engine_gauss_integration.cc
M		test/test_fe_engine/test_fe_engine_precomputation.cc
M		test/test_fe_engine/test_fe_engine_precomputation_bernoulli_3.cc
M		test/test_fe_engine/test_fe_engine_precomputation_structural.cc
M		test/test_fe_engine/test_fe_engine_structural_fixture.hh
M		test/test_fe_engine/test_gradient.cc
M		test/test_fe_engine/test_integrate.cc
M		test/test_fe_engine/test_inverse_map.cc
M		test/test_geometry/test_segment_intersection_tetrahedron_4.cc
M		test/test_gtest_main.cc
M		test/test_gtest_utils.hh
M		test/test_io/test_dumper/test_dumper.cc
M		test/test_io/test_parser/test_parser.verified
M		test/test_mesh/test_mesh_periodic.cc
M		test/test_mesh_utils/test_mesh_iterators.cc
M		test/test_mesh_utils/test_mesh_partitionate/test_mesh_partitionate_scotch.cc
M		test/test_model/CMakeLists.txt
M		test/test_model/patch_tests/CMakeLists.txt
V		test/test_model/patch_tests/data/{material_anisotropic.dat → material_anisotropic_3.dat}
A		test/test_model/patch_tests/data/material_anisotropic_1.dat
A		test/test_model/patch_tests/data/material_anisotropic_2.dat
V		test/test_model/patch_tests/data/{material_anisotropic_3.dat ← material_anisotropic.dat}
M		test/test_model/patch_tests/data/material_check_stress_plane_strain.dat
A		test/test_model/patch_tests/data/material_check_stress_plane_strain_finite_deformation.dat
M		test/test_model/patch_tests/data/material_check_stress_plane_stress.dat
A		test/test_model/patch_tests/data/material_check_stress_plane_stress_finite_deformation.dat
A		test/test_model/patch_tests/patch_test_linear_anisotropic.cc
D		test/test_model/patch_tests/patch_test_linear_anisotropic_explicit.cc
V		test/test_model/patch_tests/{patch_test_linear_anisotropic_explicit.py → test_patch_linear_anisotropic_explicit.py}
M		test/test_model/patch_tests/patch_test_linear_elastic_explicit.cc
D		test/test_model/patch_tests/patch_test_linear_elastic_explicit.py
M		test/test_model/patch_tests/patch_test_linear_elastic_implicit.cc
D		test/test_model/patch_tests/patch_test_linear_elastic_static.py
M		test/test_model/patch_tests/patch_test_linear_fixture.hh
M		test/test_model/patch_tests/patch_test_linear_fixture.py
D		test/test_model/patch_tests/patch_test_linear_heat_transfer_explicit.py
M		test/test_model/patch_tests/patch_test_linear_heat_transfer_fixture.hh
M		test/test_model/patch_tests/patch_test_linear_heat_transfer_fixture.py
D		test/test_model/patch_tests/patch_test_linear_heat_transfer_implicit.py
M		test/test_model/patch_tests/patch_test_linear_heat_transfer_static.cc
D		test/test_model/patch_tests/patch_test_linear_heat_transfer_static.py
M		test/test_model/patch_tests/patch_test_linear_solid_mechanics_fixture.hh
M		test/test_model/patch_tests/patch_test_linear_solid_mechanics_fixture.py
M		test/test_model/patch_tests/test_lumped_mass.cc
V		test/test_model/patch_tests/{test_patch_linear_anisotropic_explicit.py ← patch_test_linear_anisotropic_explicit.py}
A		test/test_model/patch_tests/test_patch_linear_elastic_explicit.py
A		test/test_model/patch_tests/test_patch_linear_elastic_static.py
A		test/test_model/patch_tests/test_patch_linear_heat_transfer_explicit.py
A		test/test_model/patch_tests/test_patch_linear_heat_transfer_implicit.py
A		test/test_model/patch_tests/test_patch_linear_heat_transfer_static.py
A	(dir)	test/test_model/test_common/
A		test/test_model/test_common/CMakeLists.txt
A		test/test_model/test_common/mesh.geo
A		test/test_model/test_common/test_dof_manager.cc
A	(dir)	test/test_model/test_common/test_model_solver/
A		test/test_model/test_common/test_model_solver/CMakeLists.txt
A		test/test_model/test_common/test_model_solver/test_dof_manager_default.cc
V		test/test_model/{test_common ← }/test_model_solver/test_dof_manager_default.verified
A		test/test_model/test_common/test_model_solver/test_model_solver.cc
V		test/test_model/{test_common ← }/test_model_solver/test_model_solver.py
A		test/test_model/test_common/test_model_solver/test_model_solver_dynamic.cc
A		test/test_model/test_common/test_model_solver/test_model_solver_dynamic.py
A		test/test_model/test_common/test_model_solver/test_model_solver_dynamic_explicit.verified
A		test/test_model/test_common/test_model_solver/test_model_solver_dynamic_implicit.verified
A		test/test_model/test_common/test_model_solver/test_model_solver_dynamic_petsc.cc
A		test/test_model/test_common/test_model_solver/test_model_solver_dynamic_petsc.verified
P		test/test_model/test_common/test_model_solver/test_model_solver_mumps.verified Copied from test/test_model/test_model_solver/test_model_solver.verified
A		test/test_model/test_common/test_model_solver/test_model_solver_my_model.hh
V		test/test_model/{test_common/test_model_solver/test_model_solver_petsc.verified ← test_model_solver/test_model_solver.verified}
A	(dir)	test/test_model/test_common/test_non_local_toolbox/
A		test/test_model/test_common/test_non_local_toolbox/CMakeLists.txt
V		test/test_model/{test_common ← }/test_non_local_toolbox/fine_mesh.msh
V		test/test_model/{test_common ← }/test_non_local_toolbox/material.dat
V		test/test_model/{test_common ← }/test_non_local_toolbox/material_avg.dat
V		test/test_model/{test_common ← }/test_non_local_toolbox/material_parallel_test.dat
V		test/test_model/{test_common ← }/test_non_local_toolbox/material_remove_damage.dat
V		test/test_model/{test_common ← }/test_non_local_toolbox/material_weight_computation.dat
A		test/test_model/test_common/test_non_local_toolbox/my_model.hh
V		test/test_model/{test_common ← }/test_non_local_toolbox/pair_test.msh
V		test/test_model/{test_common ← }/test_non_local_toolbox/parallel_test.msh
V		test/test_model/{test_common ← }/test_non_local_toolbox/plate.geo
V		test/test_model/{test_common ← }/test_non_local_toolbox/plate.msh
A		test/test_model/test_common/test_non_local_toolbox/plot_neighborhoods.py
A		test/test_model/test_common/test_non_local_toolbox/test_build_neighborhood_parallel.cc
V		test/test_model/{test_common ← }/test_non_local_toolbox/test_material.cc
V		test/test_model/{test_common ← }/test_non_local_toolbox/test_material.hh
V		test/test_model/{test_common ← }/test_non_local_toolbox/test_material_damage.cc
V		test/test_model/{test_common ← }/test_non_local_toolbox/test_material_damage.hh
A		test/test_model/test_common/test_non_local_toolbox/test_non_local_averaging.cc
V		test/test_model/{test_common ← }/test_non_local_toolbox/test_non_local_neighborhood_base.cc
A		test/test_model/test_common/test_non_local_toolbox/test_non_local_neighborhood_base.verified
A		test/test_model/test_common/test_non_local_toolbox/test_pair_computation.cc
A		test/test_model/test_common/test_non_local_toolbox/test_remove_damage_weight_function.cc
V		test/test_model/{test_common ← }/test_non_local_toolbox/test_remove_damage_weight_function.verified
V		test/test_model/{test_common ← }/test_non_local_toolbox/test_weight_computation.cc
V		test/test_model/{test_common ← }/test_non_local_toolbox/test_weight_computation.verified
D		test/test_model/test_model_solver
D		test/test_model/test_model_solver/CMakeLists.txt
D		test/test_model/test_model_solver/test_dof_manager_default.cc
V		test/test_model/{ → test_common}/test_model_solver/test_dof_manager_default.verified
D		test/test_model/test_model_solver/test_model_solver.cc
V		test/test_model/{ → test_common}/test_model_solver/test_model_solver.py
P		test/test_model/test_model_solver/test_model_solver.verified Deleted after being copied to multiple locations: test/test_model/test_common/test_model_solver/test_model_solver_mumps.verified test/test_model/test_common/test_model_solver/test_model_solver_petsc.verified
D		test/test_model/test_model_solver/test_model_solver_dynamic.cc
D		test/test_model/test_model_solver/test_model_solver_dynamic.py
D		test/test_model/test_model_solver/test_model_solver_dynamic_explicit.verified
D		test/test_model/test_model_solver/test_model_solver_dynamic_implicit.verified
D		test/test_model/test_model_solver/test_model_solver_my_model.hh
D		test/test_model/test_non_local_toolbox
D		test/test_model/test_non_local_toolbox/CMakeLists.txt
V		test/test_model/{ → test_common}/test_non_local_toolbox/fine_mesh.msh
V		test/test_model/{ → test_common}/test_non_local_toolbox/material.dat
V		test/test_model/{ → test_common}/test_non_local_toolbox/material_avg.dat
V		test/test_model/{ → test_common}/test_non_local_toolbox/material_parallel_test.dat
V		test/test_model/{ → test_common}/test_non_local_toolbox/material_remove_damage.dat
V		test/test_model/{ → test_common}/test_non_local_toolbox/material_weight_computation.dat
D		test/test_model/test_non_local_toolbox/my_model.hh
V		test/test_model/{ → test_common}/test_non_local_toolbox/pair_test.msh
V		test/test_model/{ → test_common}/test_non_local_toolbox/parallel_test.msh
V		test/test_model/{ → test_common}/test_non_local_toolbox/plate.geo
V		test/test_model/{ → test_common}/test_non_local_toolbox/plate.msh
D		test/test_model/test_non_local_toolbox/plot_neighborhoods.py
D		test/test_model/test_non_local_toolbox/test_build_neighborhood_parallel.cc
V		test/test_model/{ → test_common}/test_non_local_toolbox/test_material.cc
V		test/test_model/{ → test_common}/test_non_local_toolbox/test_material.hh
V		test/test_model/{ → test_common}/test_non_local_toolbox/test_material_damage.cc
V		test/test_model/{ → test_common}/test_non_local_toolbox/test_material_damage.hh
D		test/test_model/test_non_local_toolbox/test_non_local_averaging.cc
V		test/test_model/{ → test_common}/test_non_local_toolbox/test_non_local_neighborhood_base.cc
D		test/test_model/test_non_local_toolbox/test_non_local_neighborhood_base.verified
D		test/test_model/test_non_local_toolbox/test_pair_computation.cc
D		test/test_model/test_non_local_toolbox/test_remove_damage_weight_function.cc
V		test/test_model/{ → test_common}/test_non_local_toolbox/test_remove_damage_weight_function.verified
V		test/test_model/{ → test_common}/test_non_local_toolbox/test_weight_computation.cc
V		test/test_model/{ → test_common}/test_non_local_toolbox/test_weight_computation.verified
M		test/test_model/test_solid_mechanics_model/CMakeLists.txt
A		test/test_model/test_solid_mechanics_model/material_elastic.dat
M		test/test_model/test_solid_mechanics_model/test_cohesive/CMakeLists.txt
A		test/test_model/test_solid_mechanics_model/test_cohesive/material_0_finite_def.dat
M		test/test_model/test_solid_mechanics_model/test_cohesive/test_cohesive.cc
M		test/test_model/test_solid_mechanics_model/test_cohesive/test_cohesive_fixture.hh
M		test/test_model/test_solid_mechanics_model/test_cohesive/test_cohesive_insertion/test_cohesive_insertion_along_physical_surfaces.cc
M		test/test_model/test_solid_mechanics_model/test_cohesive/test_cohesive_intrinsic_impl/test_cohesive_intrinsic_impl.cc
M		test/test_model/test_solid_mechanics_model/test_cohesive/test_cohesive_linear_friction/test_cohesive_friction.cc
M		test/test_model/test_solid_mechanics_model/test_cohesive/test_materials/test_material_cohesive_fixture.hh
M		test/test_model/test_solid_mechanics_model/test_cohesive/test_materials/test_material_cohesive_linear.cc
M		test/test_model/test_solid_mechanics_model/test_embedded_interface/test_embedded_element_matrix.cc
M		test/test_model/test_solid_mechanics_model/test_embedded_interface/test_embedded_interface_model.cc
M		test/test_model/test_solid_mechanics_model/test_embedded_interface/test_embedded_interface_model_prestress.cc
M		test/test_model/test_solid_mechanics_model/test_energies/test_solid_mechanics_model_linear_elastic_potential_energy.cc
M		test/test_model/test_solid_mechanics_model/test_energies/test_solid_mechanics_model_work_dynamics.cc
M		test/test_model/test_solid_mechanics_model/test_energies/test_solid_mechanics_model_work_quasistatic.cc
A		test/test_model/test_solid_mechanics_model/test_materials/1_tetrahedron.msh
A		test/test_model/test_solid_mechanics_model/test_materials/1_tetrehedron.geo
M		test/test_model/test_solid_mechanics_model/test_materials/CMakeLists.txt
A		test/test_model/test_solid_mechanics_model/test_materials/cube.geo
M		test/test_model/test_solid_mechanics_model/test_materials/local_material_damage.cc
M		test/test_model/test_solid_mechanics_model/test_materials/local_material_damage.hh
A		test/test_model/test_solid_mechanics_model/test_materials/material_finite_deformation.dat
A		test/test_model/test_solid_mechanics_model/test_materials/py_mazars.py
M		test/test_model/test_solid_mechanics_model/test_materials/test_damage_materials.cc
M		test/test_model/test_solid_mechanics_model/test_materials/test_elastic_materials.cc
M		test/test_model/test_solid_mechanics_model/test_materials/test_finite_def_materials.cc
A		test/test_model/test_solid_mechanics_model/test_materials/test_finite_deformation.cc
M		test/test_model/test_solid_mechanics_model/test_materials/test_local_material.cc
M		test/test_model/test_solid_mechanics_model/test_materials/test_material_elasto_plastic_linear_isotropic_hardening/test_material_elasto_plastic_linear_isotropic_hardening.cc
M		test/test_model/test_solid_mechanics_model/test_materials/test_material_fixtures.hh
M		test/test_model/test_solid_mechanics_model/test_materials/test_material_mazars.cc
M		test/test_model/test_solid_mechanics_model/test_materials/test_material_thermal.cc
M		test/test_model/test_solid_mechanics_model/test_materials/test_material_viscoelastic/test_material_standard_linear_solid_deviatoric_relaxation.cc
A	(dir)	test/test_model/test_solid_mechanics_model/test_materials/test_material_viscoelastic_maxwell/
A		test/test_model/test_solid_mechanics_model/test_materials/test_material_viscoelastic_maxwell/CMakeLists.txt
A		test/test_model/test_solid_mechanics_model/test_materials/test_material_viscoelastic_maxwell/material_viscoelastic_maxwell.dat
A		test/test_model/test_solid_mechanics_model/test_materials/test_material_viscoelastic_maxwell/test_material_viscoelastic_maxwell.geo
A		test/test_model/test_solid_mechanics_model/test_materials/test_material_viscoelastic_maxwell/test_material_viscoelastic_maxwell_relaxation.cc
M		test/test_model/test_solid_mechanics_model/test_materials/test_multi_material_elastic.cc
M		test/test_model/test_solid_mechanics_model/test_materials/test_plastic_materials.cc
M		test/test_model/test_solid_mechanics_model/test_solid_mechanics_model_dynamics.cc
M		test/test_model/test_solid_mechanics_model/test_solid_mechanics_model_fixture.hh
M		test/test_model/test_solid_mechanics_model/test_solid_mechanics_model_material_eigenstrain.cc
A		test/test_model/test_solid_mechanics_model/test_solid_mechanics_model_material_large_rotation.cc
M		test/test_model/test_structural_mechanics_model/test_structural_mechanics_model_bernoulli_beam_3.cc
M		test/test_model/test_structural_mechanics_model/test_structural_mechanics_model_bernoulli_beam_dynamics.cc
M		test/test_model/test_structural_mechanics_model/test_structural_mechanics_model_fixture.hh
M		test/test_python_interface/CMakeLists.txt
A		test/test_python_interface/elastic.dat
D		test/test_python_interface/input_test.dat
M		test/test_python_interface/mesh_dcb_2d.geo
D		test/test_python_interface/test_boundary_condition_functors.py
A		test/test_python_interface/test_common.cc
D		test/test_python_interface/test_mesh_interface.py
D		test/test_python_interface/test_multiple_init.py
A		test/test_python_interface/test_pybind.py
M		test/test_solver/CMakeLists.txt
M		test/test_solver/test_petsc_matrix_profile.cc
M		test/test_solver/test_petsc_matrix_profile_parallel.cc
M		test/test_solver/test_solver_petsc.cc
M		test/test_solver/test_sparse_matrix_product.cc
M		test/test_solver/test_sparse_matrix_product.verified
M		test/test_solver/test_sparse_solver_mumps.cc
M		test/test_synchronizer/CMakeLists.txt
A		test/test_synchronizer/test_communicator.cc
M		test/test_synchronizer/test_data_distribution.cc
M		test/test_synchronizer/test_dof_synchronizer.cc
M		test/test_synchronizer/test_dof_synchronizer_communication.cc
M		test/test_synchronizer/test_facet_synchronizer.cc
M		test/test_synchronizer/test_grid_synchronizer.cc
M		test/test_synchronizer/test_node_synchronizer.cc
M		test/test_synchronizer/test_synchronizer_communication.cc
A	(dir)	third-party/akantu_iterators/
A		third-party/akantu_iterators/.arcconfig
A		third-party/akantu_iterators/.arclint
A		third-party/akantu_iterators/.clang-format
A		third-party/akantu_iterators/.clang-tidy
A		third-party/akantu_iterators/.gitignore
A		third-party/akantu_iterators/.gitlab-ci.yml
A	(dir)	third-party/akantu_iterators/.linters/
A	(dir)	third-party/akantu_iterators/.linters/clang-format-linter/
A		third-party/akantu_iterators/.linters/clang-format-linter/.arclint
A		third-party/akantu_iterators/.linters/clang-format-linter/.gitignore
A		third-party/akantu_iterators/.linters/clang-format-linter/LICENSE
A		third-party/akantu_iterators/.linters/clang-format-linter/README.md
A		third-party/akantu_iterators/.linters/clang-format-linter/__phutil_library_init__.php
A		third-party/akantu_iterators/.linters/clang-format-linter/__phutil_library_map__.php
A	(dir)	third-party/akantu_iterators/.linters/clang-format-linter/lint/
A	(dir)	third-party/akantu_iterators/.linters/clang-format-linter/lint/linter/
A		third-party/akantu_iterators/.linters/clang-format-linter/lint/linter/ClangFormatLinter.php
A		third-party/akantu_iterators/CMakeLists.txt
A		third-party/akantu_iterators/COPYING
A		third-party/akantu_iterators/COPYING.lesser
A		third-party/akantu_iterators/Jenkinsfile
A	(dir)	third-party/akantu_iterators/cmake/
A		third-party/akantu_iterators/cmake/AkantuIteratorsTools.cmake
A		third-party/akantu_iterators/cmake/GTest.cmake
A	(dir)	third-party/akantu_iterators/include/
A		third-party/akantu_iterators/include/aka_compatibilty_with_cpp_standard.hh
A		third-party/akantu_iterators/include/aka_iterators.hh
A		third-party/akantu_iterators/include/aka_static_if.hh
A		third-party/akantu_iterators/include/aka_str_hash.hh
A		third-party/akantu_iterators/include/aka_tuple_tools.hh
A	(dir)	third-party/akantu_iterators/include/iterators/
A		third-party/akantu_iterators/include/iterators/aka_arange_iterator.hh
A		third-party/akantu_iterators/include/iterators/aka_enumerate_iterator.hh
A		third-party/akantu_iterators/include/iterators/aka_filter_iterator.hh
A		third-party/akantu_iterators/include/iterators/aka_transform_iterator.hh
A		third-party/akantu_iterators/include/iterators/aka_zip_iterator.hh
A	(dir)	third-party/akantu_iterators/test/
A		third-party/akantu_iterators/test/CMakeLists.txt
A	(dir)	third-party/akantu_iterators/test/ci/
A		third-party/akantu_iterators/test/ci/.arcconfig
A		third-party/akantu_iterators/test/ci/.arclint
A		third-party/akantu_iterators/test/ci/Dockerfile
A		third-party/akantu_iterators/test/ci/ctest2junit.xsl
A	(dir)	third-party/akantu_iterators/test/ci/scripts/
A		third-party/akantu_iterators/test/ci/scripts/COPYING
A		third-party/akantu_iterators/test/ci/scripts/COPYING.lesser
A	(dir)	third-party/akantu_iterators/test/ci/scripts/harbomaster/
A		third-party/akantu_iterators/test/ci/scripts/harbomaster/__init__.py
A		third-party/akantu_iterators/test/ci/scripts/harbomaster/arclint.py
A		third-party/akantu_iterators/test/ci/scripts/harbomaster/hbm.py
A		third-party/akantu_iterators/test/ci/scripts/harbomaster/results.py
A		third-party/akantu_iterators/test/ci/scripts/harbomaster/testresults.py
A		third-party/akantu_iterators/test/ci/scripts/hbm
A		third-party/akantu_iterators/test/test_gtest_main.cc
A		third-party/akantu_iterators/test/test_iterators.cc
A		third-party/akantu_iterators/test/test_str.cc
A		third-party/akantu_iterators/test/test_tuples.cc
A		third-party/cmake/akantu_iterators.cmake
M		third-party/cmake/gtest.cmake