Removing obsolete toolbox files
3f5d4e433401
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Authored by Thomas Bolton <thomas.arthur.bolton@gmail.com> on Jan 16 2020, 17:27.

Description

Removing obsolete toolbox files

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Committed

Thomas Bolton <thomas.arthur.bolton@gmail.com>

Jan 16 2020, 17:27

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bolton

Jan 16 2020, 15:46

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rCAPTOOLBOX0ed01132c204: Test

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Thomas Bolton <thomas.arthur.bolton@gmail.com> committed rCAPTOOLBOX3f5d4e433401: Removing obsolete toolbox files (authored by Thomas Bolton <thomas.arthur.bolton@gmail.com>).Jan 16 2020, 17:27

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				Path
	D			Analysis
	D			Analysis/Build_Connectivity_Matrix.m
	D			Analysis/CAPToNIFTI.m
	D			Analysis/CAP_AddToLog.m
	D			Analysis/CAP_AssignFrames.m
	D			Analysis/CAP_ComputeMetrics.m
	D			Analysis/CAP_Compute_SeedMap.m
	D			Analysis/CAP_ConsensusClustering.m
	D			Analysis/CAP_FindDataType.m
	D			Analysis/CAP_IsDataOK.m
	D			Analysis/CAP_V2V.m
	D			Analysis/CAP_find_activity.m
	D			Analysis/CAP_find_activity_HCP.m
	D			Analysis/CAP_get_seed_traces.m
	D			Analysis/CAP_mask4kmeans.m
	D			Analysis/ComputeClusteringQuality.m
	D			Analysis/Compute_Metrics.m
	D			Analysis/Compute_Metrics_V2.m
	D			Analysis/Compute_Metrics_simpler.m
	D			Analysis/ConsensusClustering.m
	D			Analysis/Run_Clustering.m
	D			Analysis/circular_arrow.m
	D			Analysis/jUpperTriMatToVec.m
	D			Analysis/munkres.m
	D			CAP_TB.fig
	D			CAP_TB.m
	D			DefaultData
	D			DefaultData/2019_03_03_BCT
	D			DefaultData/2019_03_03_BCT/adjacency_plot_und.m
	D			DefaultData/2019_03_03_BCT/agreement.m
	D			DefaultData/2019_03_03_BCT/agreement_weighted.m
	D			DefaultData/2019_03_03_BCT/align_matrices.m
	D			DefaultData/2019_03_03_BCT/assortativity_bin.m
	D			DefaultData/2019_03_03_BCT/assortativity_wei.m
	D			DefaultData/2019_03_03_BCT/backbone_wu.m
	D			DefaultData/2019_03_03_BCT/betweenness_bin.m
	D			DefaultData/2019_03_03_BCT/betweenness_wei.m
	D			DefaultData/2019_03_03_BCT/breadth.m
	D			DefaultData/2019_03_03_BCT/breadthdist.m
	D			DefaultData/2019_03_03_BCT/charpath.m
	D			DefaultData/2019_03_03_BCT/clique_communities.m
	D			DefaultData/2019_03_03_BCT/clustering_coef_bd.m
	D			DefaultData/2019_03_03_BCT/clustering_coef_bu.m
	D			DefaultData/2019_03_03_BCT/clustering_coef_wd.m
	D			DefaultData/2019_03_03_BCT/clustering_coef_wu.m
	D			DefaultData/2019_03_03_BCT/clustering_coef_wu_sign.m
	D			DefaultData/2019_03_03_BCT/community_louvain.m
	D			DefaultData/2019_03_03_BCT/consensus_und.m
	D			DefaultData/2019_03_03_BCT/core_periphery_dir.m
	D			DefaultData/2019_03_03_BCT/cycprob.m
	D			DefaultData/2019_03_03_BCT/data_and_demos
	D			DefaultData/2019_03_03_BCT/data_and_demos/Coactivation_matrix.mat
	D			DefaultData/2019_03_03_BCT/data_and_demos/GroupAverage_rsfMRI_matrix.mat
	D			DefaultData/2019_03_03_BCT/data_and_demos/cat.mat
	D			DefaultData/2019_03_03_BCT/data_and_demos/demo_efficiency_measures.m
	D			DefaultData/2019_03_03_BCT/data_and_demos/demo_efficiency_measures_data.mat
	D			DefaultData/2019_03_03_BCT/data_and_demos/demo_generative_models_data.mat
	D			DefaultData/2019_03_03_BCT/data_and_demos/demo_generative_models_geometric.m
	D			DefaultData/2019_03_03_BCT/data_and_demos/demo_generative_models_neighbors.m
	D			DefaultData/2019_03_03_BCT/data_and_demos/fve30.mat
	D			DefaultData/2019_03_03_BCT/data_and_demos/fve32.mat
	D			DefaultData/2019_03_03_BCT/data_and_demos/macaque47.mat
	D			DefaultData/2019_03_03_BCT/data_and_demos/macaque71.mat
	D			DefaultData/2019_03_03_BCT/data_and_demos/motif34lib.mat
	D			DefaultData/2019_03_03_BCT/degrees_dir.m
	D			DefaultData/2019_03_03_BCT/degrees_und.m
	D			DefaultData/2019_03_03_BCT/density_dir.m
	D			DefaultData/2019_03_03_BCT/density_und.m
	D			DefaultData/2019_03_03_BCT/diffusion_efficiency.m
	D			DefaultData/2019_03_03_BCT/distance_bin.m
	D			DefaultData/2019_03_03_BCT/distance_wei.m
	D			DefaultData/2019_03_03_BCT/distance_wei_floyd.m
	D			DefaultData/2019_03_03_BCT/diversity_coef_sign.m
	D			DefaultData/2019_03_03_BCT/edge_betweenness_bin.m
	D			DefaultData/2019_03_03_BCT/edge_betweenness_wei.m
	D			DefaultData/2019_03_03_BCT/edge_nei_overlap_bd.m
	D			DefaultData/2019_03_03_BCT/edge_nei_overlap_bu.m
	D			DefaultData/2019_03_03_BCT/efficiency_bin.m
	D			DefaultData/2019_03_03_BCT/efficiency_wei.m
	D			DefaultData/2019_03_03_BCT/eigenvector_centrality_und.m
	D			DefaultData/2019_03_03_BCT/erange.m
	D			DefaultData/2019_03_03_BCT/evaluate_generative_model.m
	D			DefaultData/2019_03_03_BCT/find_motif34.m
	D			DefaultData/2019_03_03_BCT/findpaths.m
	D			DefaultData/2019_03_03_BCT/findwalks.m
	D			DefaultData/2019_03_03_BCT/flow_coef_bd.m
	D			DefaultData/2019_03_03_BCT/gateway_coef_sign.m
	D			DefaultData/2019_03_03_BCT/generate_fc.m
	D			DefaultData/2019_03_03_BCT/generative_model.m
	D			DefaultData/2019_03_03_BCT/get_components.m
	D			DefaultData/2019_03_03_BCT/grid_communities.m
	D			DefaultData/2019_03_03_BCT/gtom.m
	D			DefaultData/2019_03_03_BCT/jdegree.m
	D			DefaultData/2019_03_03_BCT/kcore_bd.m
	D			DefaultData/2019_03_03_BCT/kcore_bu.m
	D			DefaultData/2019_03_03_BCT/kcoreness_centrality_bd.m
	D			DefaultData/2019_03_03_BCT/kcoreness_centrality_bu.m
	D			DefaultData/2019_03_03_BCT/latmio_dir.m
	D			DefaultData/2019_03_03_BCT/latmio_dir_connected.m
	D			DefaultData/2019_03_03_BCT/latmio_und.m
	D			DefaultData/2019_03_03_BCT/latmio_und_connected.m
	D			DefaultData/2019_03_03_BCT/link_communities.m
	D			DefaultData/2019_03_03_BCT/local_assortativity_wu_sign.m
	D			DefaultData/2019_03_03_BCT/make_motif34lib.m
	D			DefaultData/2019_03_03_BCT/makeevenCIJ.m
	D			DefaultData/2019_03_03_BCT/makefractalCIJ.m
	D			DefaultData/2019_03_03_BCT/makelatticeCIJ.m
	D			DefaultData/2019_03_03_BCT/makerandCIJ_dir.m
	D			DefaultData/2019_03_03_BCT/makerandCIJ_und.m
	D			DefaultData/2019_03_03_BCT/makerandCIJdegreesfixed.m
	D			DefaultData/2019_03_03_BCT/makeringlatticeCIJ.m
	D			DefaultData/2019_03_03_BCT/maketoeplitzCIJ.m
	D			DefaultData/2019_03_03_BCT/matching_ind.m
	D			DefaultData/2019_03_03_BCT/matching_ind_und.m
	D			DefaultData/2019_03_03_BCT/mean_first_passage_time.m
	D			DefaultData/2019_03_03_BCT/mleme_constraint_model.m
	D			DefaultData/2019_03_03_BCT/modularity_dir.m
	D			DefaultData/2019_03_03_BCT/modularity_und.m
	D			DefaultData/2019_03_03_BCT/module_degree_zscore.m
	D			DefaultData/2019_03_03_BCT/motif3funct_bin.m
	D			DefaultData/2019_03_03_BCT/motif3funct_wei.m
	D			DefaultData/2019_03_03_BCT/motif3struct_bin.m
	D			DefaultData/2019_03_03_BCT/motif3struct_wei.m
	D			DefaultData/2019_03_03_BCT/motif4funct_bin.m
	D			DefaultData/2019_03_03_BCT/motif4funct_wei.m
	D			DefaultData/2019_03_03_BCT/motif4struct_bin.m
	D			DefaultData/2019_03_03_BCT/motif4struct_wei.m
	D			DefaultData/2019_03_03_BCT/navigation_wu.m
	D			DefaultData/2019_03_03_BCT/null_model_dir_sign.m
	D			DefaultData/2019_03_03_BCT/null_model_und_sign.m
	D			DefaultData/2019_03_03_BCT/pagerank_centrality.m
	D			DefaultData/2019_03_03_BCT/participation_coef.m
	D			DefaultData/2019_03_03_BCT/participation_coef_sign.m
	D			DefaultData/2019_03_03_BCT/partition_distance.m
	D			DefaultData/2019_03_03_BCT/path_transitivity.m
	D			DefaultData/2019_03_03_BCT/predict_fc.m
	D			DefaultData/2019_03_03_BCT/quasi_idempotence.m
	D			DefaultData/2019_03_03_BCT/randmio_dir.m
	D			DefaultData/2019_03_03_BCT/randmio_dir_connected.m
	D			DefaultData/2019_03_03_BCT/randmio_dir_signed.m
	D			DefaultData/2019_03_03_BCT/randmio_und.m
	D			DefaultData/2019_03_03_BCT/randmio_und_connected.m
	D			DefaultData/2019_03_03_BCT/randmio_und_signed.m
	D			DefaultData/2019_03_03_BCT/randomize_graph_partial_und.m
	D			DefaultData/2019_03_03_BCT/randomizer_bin_und.m
	D			DefaultData/2019_03_03_BCT/reachdist.m
	D			DefaultData/2019_03_03_BCT/rentian_scaling_2d.m
	D			DefaultData/2019_03_03_BCT/rentian_scaling_3d.m
	D			DefaultData/2019_03_03_BCT/reorderMAT.m
	D			DefaultData/2019_03_03_BCT/reorder_matrix.m
	D			DefaultData/2019_03_03_BCT/reorder_mod.m
	D			DefaultData/2019_03_03_BCT/resource_efficiency_bin.m
	D			DefaultData/2019_03_03_BCT/retrieve_shortest_path.m
	D			DefaultData/2019_03_03_BCT/rich_club_bd.m
	D			DefaultData/2019_03_03_BCT/rich_club_bu.m
	D			DefaultData/2019_03_03_BCT/rich_club_wd.m
	D			DefaultData/2019_03_03_BCT/rich_club_wu.m
	D			DefaultData/2019_03_03_BCT/rout_efficiency.m
	D			DefaultData/2019_03_03_BCT/score_wu.m
	D			DefaultData/2019_03_03_BCT/search_information.m
	D			DefaultData/2019_03_03_BCT/strengths_dir.m
	D			DefaultData/2019_03_03_BCT/strengths_und.m
	D			DefaultData/2019_03_03_BCT/strengths_und_sign.m
	D			DefaultData/2019_03_03_BCT/subgraph_centrality.m
	D			DefaultData/2019_03_03_BCT/threshold_absolute.m
	D			DefaultData/2019_03_03_BCT/threshold_proportional.m
	D			DefaultData/2019_03_03_BCT/transitivity_bd.m
	D			DefaultData/2019_03_03_BCT/transitivity_bu.m
	D			DefaultData/2019_03_03_BCT/transitivity_wd.m
	D			DefaultData/2019_03_03_BCT/transitivity_wu.m
	D			DefaultData/2019_03_03_BCT/weight_conversion.m
	D			DefaultData/2019_03_03_BCT/writetoPAJ.m
	D			DefaultData/Underlay.nii
	D			DefaultData/brain.mat
	D			DefaultData/load_nii.m
	D			DefaultData/load_nii_hdr.m
	D			DefaultData/load_nii_img.m
	D			DefaultData/make_nii.m
	D			DefaultData/save_nii.m
	D			DefaultData/save_nii_ext.m
	D			DefaultData/save_nii_hdr.m
	D			DefaultData/xform_nii.m
	D			FakeData
	D			FakeData/FD.mat
	D			FakeData/TC.mat
	D			FakeData/brain_info.mat
	D			FakeData/mask.mat
	D			FakeData/seed1.mat
	D			FakeData/seed2.mat
	D			FakeData/seed3.mat
	D			Plotting
	D			Plotting/Create_CAP_colorbar.m
	D			Plotting/MakeViolin.m
	D			Plotting/cbrewer
	D			Plotting/cbrewer/cbrewer.m
	D			Plotting/cbrewer/cbrewer_preview.jpg
	D			Plotting/cbrewer/change_jet.m
	D			Plotting/cbrewer/colorbrewer.mat
	D			Plotting/cbrewer/interpolate_cbrewer.m
	D			Plotting/cbrewer/plot_brewer_cmap.m
	D			Plotting/distributionPlot.m
	D			Plotting/plot_slice.m
	D			Script_CAPs_terminal.m