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Authored by Thomas Bolton <thomas.arthur.bolton@gmail.com> on Jan 30 2021, 02:58.

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Thomas Bolton <thomas.arthur.bolton@gmail.com>

Jan 30 2021, 02:58

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bolton

Jan 30 2021, 00:41

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rISFCCLUSe21d70234914: no message

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Thomas Bolton <thomas.arthur.bolton@gmail.com> committed rISFCCLUSb90a4357cb97: no message (authored by Thomas Bolton <thomas.arthur.bolton@gmail.com>).Jan 30 2021, 02:58

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				Path
	V			{Analysis.m ← Matlab_Scripts/Script_Vertes_Analyses.m}
	V			{Computations_ISFC_Excursions.m ← Matlab_Scripts/JOVE_ISFC.m}
	V			{Computations_ISFC_States.m ← Matlab_Scripts/Script_NI_SI_SHINEY.m}
	D			Matlab_Scripts/2019_03_03_BCT
	D			Matlab_Scripts/2019_03_03_BCT/adjacency_plot_und.m
	D			Matlab_Scripts/2019_03_03_BCT/agreement.m
	D			Matlab_Scripts/2019_03_03_BCT/agreement_weighted.m
	D			Matlab_Scripts/2019_03_03_BCT/align_matrices.m
	D			Matlab_Scripts/2019_03_03_BCT/assortativity_bin.m
	D			Matlab_Scripts/2019_03_03_BCT/assortativity_wei.m
	D			Matlab_Scripts/2019_03_03_BCT/backbone_wu.m
	D			Matlab_Scripts/2019_03_03_BCT/betweenness_bin.m
	D			Matlab_Scripts/2019_03_03_BCT/betweenness_wei.m
	D			Matlab_Scripts/2019_03_03_BCT/breadth.m
	D			Matlab_Scripts/2019_03_03_BCT/breadthdist.m
	D			Matlab_Scripts/2019_03_03_BCT/charpath.m
	D			Matlab_Scripts/2019_03_03_BCT/clique_communities.m
	D			Matlab_Scripts/2019_03_03_BCT/clustering_coef_bd.m
	D			Matlab_Scripts/2019_03_03_BCT/clustering_coef_bu.m
	D			Matlab_Scripts/2019_03_03_BCT/clustering_coef_wd.m
	D			Matlab_Scripts/2019_03_03_BCT/clustering_coef_wu.m
	D			Matlab_Scripts/2019_03_03_BCT/clustering_coef_wu_sign.m
	D			Matlab_Scripts/2019_03_03_BCT/community_louvain.m
	D			Matlab_Scripts/2019_03_03_BCT/consensus_und.m
	D			Matlab_Scripts/2019_03_03_BCT/core_periphery_dir.m
	D			Matlab_Scripts/2019_03_03_BCT/cycprob.m
	D			Matlab_Scripts/2019_03_03_BCT/data_and_demos
	D			Matlab_Scripts/2019_03_03_BCT/data_and_demos/Coactivation_matrix.mat
	D			Matlab_Scripts/2019_03_03_BCT/data_and_demos/GroupAverage_rsfMRI_matrix.mat
	D			Matlab_Scripts/2019_03_03_BCT/data_and_demos/cat.mat
	D			Matlab_Scripts/2019_03_03_BCT/data_and_demos/demo_efficiency_measures.m
	D			Matlab_Scripts/2019_03_03_BCT/data_and_demos/demo_efficiency_measures_data.mat
	D			Matlab_Scripts/2019_03_03_BCT/data_and_demos/demo_generative_models_data.mat
	D			Matlab_Scripts/2019_03_03_BCT/data_and_demos/demo_generative_models_geometric.m
	D			Matlab_Scripts/2019_03_03_BCT/data_and_demos/demo_generative_models_neighbors.m
	D			Matlab_Scripts/2019_03_03_BCT/data_and_demos/fve30.mat
	D			Matlab_Scripts/2019_03_03_BCT/data_and_demos/fve32.mat
	D			Matlab_Scripts/2019_03_03_BCT/data_and_demos/macaque47.mat
	D			Matlab_Scripts/2019_03_03_BCT/data_and_demos/macaque71.mat
	D			Matlab_Scripts/2019_03_03_BCT/data_and_demos/motif34lib.mat
	D			Matlab_Scripts/2019_03_03_BCT/degrees_dir.m
	D			Matlab_Scripts/2019_03_03_BCT/degrees_und.m
	D			Matlab_Scripts/2019_03_03_BCT/density_dir.m
	D			Matlab_Scripts/2019_03_03_BCT/density_und.m
	D			Matlab_Scripts/2019_03_03_BCT/diffusion_efficiency.m
	D			Matlab_Scripts/2019_03_03_BCT/distance_bin.m
	D			Matlab_Scripts/2019_03_03_BCT/distance_wei.m
	D			Matlab_Scripts/2019_03_03_BCT/distance_wei_floyd.m
	D			Matlab_Scripts/2019_03_03_BCT/diversity_coef_sign.m
	D			Matlab_Scripts/2019_03_03_BCT/edge_betweenness_bin.m
	D			Matlab_Scripts/2019_03_03_BCT/edge_betweenness_wei.m
	D			Matlab_Scripts/2019_03_03_BCT/edge_nei_overlap_bd.m
	D			Matlab_Scripts/2019_03_03_BCT/edge_nei_overlap_bu.m
	D			Matlab_Scripts/2019_03_03_BCT/efficiency_bin.m
	D			Matlab_Scripts/2019_03_03_BCT/efficiency_wei.m
	D			Matlab_Scripts/2019_03_03_BCT/eigenvector_centrality_und.m
	D			Matlab_Scripts/2019_03_03_BCT/erange.m
	D			Matlab_Scripts/2019_03_03_BCT/evaluate_generative_model.m
	D			Matlab_Scripts/2019_03_03_BCT/find_motif34.m
	D			Matlab_Scripts/2019_03_03_BCT/findpaths.m
	D			Matlab_Scripts/2019_03_03_BCT/findwalks.m
	D			Matlab_Scripts/2019_03_03_BCT/flow_coef_bd.m
	D			Matlab_Scripts/2019_03_03_BCT/gateway_coef_sign.m
	D			Matlab_Scripts/2019_03_03_BCT/generate_fc.m
	D			Matlab_Scripts/2019_03_03_BCT/generative_model.m
	D			Matlab_Scripts/2019_03_03_BCT/get_components.m
	D			Matlab_Scripts/2019_03_03_BCT/grid_communities.m
	D			Matlab_Scripts/2019_03_03_BCT/gtom.m
	D			Matlab_Scripts/2019_03_03_BCT/jdegree.m
	D			Matlab_Scripts/2019_03_03_BCT/kcore_bd.m
	D			Matlab_Scripts/2019_03_03_BCT/kcore_bu.m
	D			Matlab_Scripts/2019_03_03_BCT/kcoreness_centrality_bd.m
	D			Matlab_Scripts/2019_03_03_BCT/kcoreness_centrality_bu.m
	D			Matlab_Scripts/2019_03_03_BCT/latmio_dir.m
	D			Matlab_Scripts/2019_03_03_BCT/latmio_dir_connected.m
	D			Matlab_Scripts/2019_03_03_BCT/latmio_und.m
	D			Matlab_Scripts/2019_03_03_BCT/latmio_und_connected.m
	D			Matlab_Scripts/2019_03_03_BCT/link_communities.m
	D			Matlab_Scripts/2019_03_03_BCT/local_assortativity_wu_sign.m
	D			Matlab_Scripts/2019_03_03_BCT/make_motif34lib.m
	D			Matlab_Scripts/2019_03_03_BCT/makeevenCIJ.m
	D			Matlab_Scripts/2019_03_03_BCT/makefractalCIJ.m
	D			Matlab_Scripts/2019_03_03_BCT/makelatticeCIJ.m
	D			Matlab_Scripts/2019_03_03_BCT/makerandCIJ_dir.m
	D			Matlab_Scripts/2019_03_03_BCT/makerandCIJ_und.m
	D			Matlab_Scripts/2019_03_03_BCT/makerandCIJdegreesfixed.m
	D			Matlab_Scripts/2019_03_03_BCT/makeringlatticeCIJ.m
	D			Matlab_Scripts/2019_03_03_BCT/maketoeplitzCIJ.m
	D			Matlab_Scripts/2019_03_03_BCT/matching_ind.m
	D			Matlab_Scripts/2019_03_03_BCT/matching_ind_und.m
	D			Matlab_Scripts/2019_03_03_BCT/mean_first_passage_time.m
	D			Matlab_Scripts/2019_03_03_BCT/mleme_constraint_model.m
	D			Matlab_Scripts/2019_03_03_BCT/modularity_dir.m
	D			Matlab_Scripts/2019_03_03_BCT/modularity_und.m
	D			Matlab_Scripts/2019_03_03_BCT/module_degree_zscore.m
	D			Matlab_Scripts/2019_03_03_BCT/motif3funct_bin.m
	D			Matlab_Scripts/2019_03_03_BCT/motif3funct_wei.m
	D			Matlab_Scripts/2019_03_03_BCT/motif3struct_bin.m
	D			Matlab_Scripts/2019_03_03_BCT/motif3struct_wei.m
	D			Matlab_Scripts/2019_03_03_BCT/motif4funct_bin.m
	D			Matlab_Scripts/2019_03_03_BCT/motif4funct_wei.m
	D			Matlab_Scripts/2019_03_03_BCT/motif4struct_bin.m
	D			Matlab_Scripts/2019_03_03_BCT/motif4struct_wei.m
	D			Matlab_Scripts/2019_03_03_BCT/navigation_wu.m
	D			Matlab_Scripts/2019_03_03_BCT/null_model_dir_sign.m
	D			Matlab_Scripts/2019_03_03_BCT/null_model_und_sign.m
	D			Matlab_Scripts/2019_03_03_BCT/pagerank_centrality.m
	D			Matlab_Scripts/2019_03_03_BCT/participation_coef.m
	D			Matlab_Scripts/2019_03_03_BCT/participation_coef_sign.m
	D			Matlab_Scripts/2019_03_03_BCT/partition_distance.m
	D			Matlab_Scripts/2019_03_03_BCT/path_transitivity.m
	D			Matlab_Scripts/2019_03_03_BCT/predict_fc.m
	D			Matlab_Scripts/2019_03_03_BCT/quasi_idempotence.m
	D			Matlab_Scripts/2019_03_03_BCT/randmio_dir.m
	D			Matlab_Scripts/2019_03_03_BCT/randmio_dir_connected.m
	D			Matlab_Scripts/2019_03_03_BCT/randmio_dir_signed.m
	D			Matlab_Scripts/2019_03_03_BCT/randmio_und.m
	D			Matlab_Scripts/2019_03_03_BCT/randmio_und_connected.m
	D			Matlab_Scripts/2019_03_03_BCT/randmio_und_signed.m
	D			Matlab_Scripts/2019_03_03_BCT/randomize_graph_partial_und.m
	D			Matlab_Scripts/2019_03_03_BCT/randomizer_bin_und.m
	D			Matlab_Scripts/2019_03_03_BCT/reachdist.m
	D			Matlab_Scripts/2019_03_03_BCT/rentian_scaling_2d.m
	D			Matlab_Scripts/2019_03_03_BCT/rentian_scaling_3d.m
	D			Matlab_Scripts/2019_03_03_BCT/reorderMAT.m
	D			Matlab_Scripts/2019_03_03_BCT/reorder_matrix.m
	D			Matlab_Scripts/2019_03_03_BCT/reorder_mod.m
	D			Matlab_Scripts/2019_03_03_BCT/resource_efficiency_bin.m
	D			Matlab_Scripts/2019_03_03_BCT/retrieve_shortest_path.m
	D			Matlab_Scripts/2019_03_03_BCT/rich_club_bd.m
	D			Matlab_Scripts/2019_03_03_BCT/rich_club_bu.m
	D			Matlab_Scripts/2019_03_03_BCT/rich_club_wd.m
	D			Matlab_Scripts/2019_03_03_BCT/rich_club_wu.m
	D			Matlab_Scripts/2019_03_03_BCT/rout_efficiency.m
	D			Matlab_Scripts/2019_03_03_BCT/score_wu.m
	D			Matlab_Scripts/2019_03_03_BCT/search_information.m
	D			Matlab_Scripts/2019_03_03_BCT/strengths_dir.m
	D			Matlab_Scripts/2019_03_03_BCT/strengths_und.m
	D			Matlab_Scripts/2019_03_03_BCT/strengths_und_sign.m
	D			Matlab_Scripts/2019_03_03_BCT/subgraph_centrality.m
	D			Matlab_Scripts/2019_03_03_BCT/threshold_absolute.m
	D			Matlab_Scripts/2019_03_03_BCT/threshold_proportional.m
	D			Matlab_Scripts/2019_03_03_BCT/transitivity_bd.m
	D			Matlab_Scripts/2019_03_03_BCT/transitivity_bu.m
	D			Matlab_Scripts/2019_03_03_BCT/transitivity_wd.m
	D			Matlab_Scripts/2019_03_03_BCT/transitivity_wu.m
	D			Matlab_Scripts/2019_03_03_BCT/weight_conversion.m
	D			Matlab_Scripts/2019_03_03_BCT/writetoPAJ.m
	V			Matlab_Scripts/{ ← Functions}/AssessGroupDifference.m
	V			Matlab_Scripts/{ ← Functions}/AssessGroupSim.m
	V			Matlab_Scripts/{ ← Functions}/CompareConnections.m
	V			Matlab_Scripts/{ ← Functions}/CompareConnections2.m
	V			Matlab_Scripts/{ ← Functions}/ComputeClusteringQuality.m
	V			Matlab_Scripts/{ ← Functions}/ComputeHomIdio.m
	V			Matlab_Scripts/{ ← Functions}/ComputeIQConnections.m
	V			Matlab_Scripts/{ ← Functions}/ComputePValuesDissimilarity.m
	V			Matlab_Scripts/{ ← Functions}/ComputePValuesNetworkFeature.m
	V			Matlab_Scripts/{ ← Functions}/ComputePValuesNodalFeatures.m
	V			Matlab_Scripts/{ ← Functions}/ConstructIndexVector.m
	V			Matlab_Scripts/{ ← Functions}/CreateBlurredMovie.m
	V			Matlab_Scripts/{ ← Functions}/CreateNetworkPLSFeature.m
	V			Matlab_Scripts/{ ← Functions}/FindIQRelatedConns.m
	D			Matlab_Scripts/Functions
	V			Matlab_Scripts/{Functions → }/AssessGroupDifference.m
	V			Matlab_Scripts/{Functions → }/AssessGroupSim.m
	V			Matlab_Scripts/{Functions → }/CompareConnections.m
	V			Matlab_Scripts/{Functions → }/CompareConnections2.m
	V			Matlab_Scripts/{Functions → }/ComputeClusteringQuality.m
	V			Matlab_Scripts/{Functions → }/ComputeHomIdio.m
	V			Matlab_Scripts/{Functions → }/ComputeIQConnections.m
	V			Matlab_Scripts/{Functions → }/ComputePValuesDissimilarity.m
	V			Matlab_Scripts/{Functions → }/ComputePValuesNetworkFeature.m
	V			Matlab_Scripts/{Functions → }/ComputePValuesNodalFeatures.m
	V			Matlab_Scripts/{Functions → }/ConstructIndexVector.m
	V			Matlab_Scripts/{Functions → }/CreateBlurredMovie.m
	V			Matlab_Scripts/{Functions → }/CreateNetworkPLSFeature.m
	V			Matlab_Scripts/{Functions → }/FindIQRelatedConns.m
	V			Matlab_Scripts/{Functions → }/GetsSigns.m
	V			Matlab_Scripts/{Functions → }/MakeFancyBars.m
	V			Matlab_Scripts/{Functions → }/MakeFancyColorDisplay.m
	V			Matlab_Scripts/{Functions → }/MakeGraphVideo_FINAL.m
	V			Matlab_Scripts/{Functions → }/MakeGraphVideo_NetworkLevel.m
	V			Matlab_Scripts/{Functions → }/MakePVector.m
	V			Matlab_Scripts/{Functions → }/MakePVector2.m
	V			Matlab_Scripts/{Functions → }/OutOfTheZone.m
	V			Matlab_Scripts/{Functions → }/PickMovieSnapshots.m
	V			Matlab_Scripts/{Functions → }/PlotBrainMetric.m
	V			Matlab_Scripts/{Functions → }/QFModul.m
	V			Matlab_Scripts/{Functions → }/RecoverNetworkSaliences.m
	V			Matlab_Scripts/{Functions → }/RunPLS.m
	V			Matlab_Scripts/{Functions → }/munkres.m
	V			Matlab_Scripts/{ ← Functions}/GetsSigns.m
	V			{Matlab_Scripts/JOVE_ISFC.m → Computations_ISFC_Excursions.m}
	V			{Matlab_Scripts/JOVE_Preprocessing.m → Preprocessing.m}
	V			Matlab_Scripts/{ ← Functions}/MakeFancyBars.m
	V			Matlab_Scripts/{ ← Functions}/MakeFancyColorDisplay.m
	V			Matlab_Scripts/{ ← Functions}/MakeGraphVideo_FINAL.m
	V			Matlab_Scripts/{ ← Functions}/MakeGraphVideo_NetworkLevel.m
	V			Matlab_Scripts/{ ← Functions}/MakePVector.m
	V			Matlab_Scripts/{ ← Functions}/MakePVector2.m
	D			Matlab_Scripts/NI_Script_Computations.m
	V			Matlab_Scripts/{ ← Functions}/OutOfTheZone.m
	V			Matlab_Scripts/{ ← Functions}/PickMovieSnapshots.m
	V			Matlab_Scripts/{ ← Functions}/PlotBrainMetric.m
	V			Matlab_Scripts/{ ← Functions}/QFModul.m
	V			Matlab_Scripts/{ ← Functions}/RecoverNetworkSaliences.m
	V			Matlab_Scripts/{ ← Functions}/RunPLS.m
	D			Matlab_Scripts/SPC_Matlab-1
	V			Matlab_Scripts/{SPC_Matlab-1 → }/computeK2.m
	V			Matlab_Scripts/{SPC_Matlab-1 → }/padjust.m
	V			Matlab_Scripts/{SPC_Matlab-1 → }/relaxPvalues.m
	D			Matlab_Scripts/Script_HBM_Results_Herewegoagain.m
	V			{Matlab_Scripts/Script_NI_SI_SHINEY.m → Computations_ISFC_States.m}
	D			Matlab_Scripts/Script_SF5.m
	D			Matlab_Scripts/Script_TCS.m
	V			{Matlab_Scripts/Script_Vertes_Analyses.m → Analysis.m}
	D			Matlab_Scripts/Script_Vertes_Computations_Mean.m
	V			Matlab_Scripts/{ ← SPC_Matlab-1}/computeK2.m
	V			Matlab_Scripts/{ ← Functions}/munkres.m
	V			Matlab_Scripts/{ ← SPC_Matlab-1}/padjust.m
	V			Matlab_Scripts/{ ← SPC_Matlab-1}/relaxPvalues.m
	V			{Preprocessing.m ← Matlab_Scripts/JOVE_Preprocessing.m}
	A			Script_Aalto.m