| | | | Path |
|---|
| | D | | | doc/html/_sources |
| | D | | | doc/html/_sources/Manual.txt |
| | D | | | doc/html/_sources/Section_accelerate.txt |
| | D | | | doc/html/_sources/Section_commands.txt |
| | D | | | doc/html/_sources/Section_errors.txt |
| | D | | | doc/html/_sources/Section_example.txt |
| | D | | | doc/html/_sources/Section_history.txt |
| | D | | | doc/html/_sources/Section_howto.txt |
| | D | | | doc/html/_sources/Section_intro.txt |
| | D | | | doc/html/_sources/Section_modify.txt |
| | D | | | doc/html/_sources/Section_packages.txt |
| | D | | | doc/html/_sources/Section_perf.txt |
| | D | | | doc/html/_sources/Section_python.txt |
| | D | | | doc/html/_sources/Section_start.txt |
| | D | | | doc/html/_sources/Section_tools.txt |
| | D | | | doc/html/_sources/accelerate_gpu.txt |
| | D | | | doc/html/_sources/accelerate_intel.txt |
| | D | | | doc/html/_sources/accelerate_kokkos.txt |
| | D | | | doc/html/_sources/accelerate_omp.txt |
| | D | | | doc/html/_sources/accelerate_opt.txt |
| | D | | | doc/html/_sources/angle_charmm.txt |
| | D | | | doc/html/_sources/angle_class2.txt |
| | D | | | doc/html/_sources/angle_coeff.txt |
| | D | | | doc/html/_sources/angle_cosine.txt |
| | D | | | doc/html/_sources/angle_cosine_delta.txt |
| | D | | | doc/html/_sources/angle_cosine_periodic.txt |
| | D | | | doc/html/_sources/angle_cosine_shift.txt |
| | D | | | doc/html/_sources/angle_cosine_shift_exp.txt |
| | D | | | doc/html/_sources/angle_cosine_squared.txt |
| | D | | | doc/html/_sources/angle_dipole.txt |
| | D | | | doc/html/_sources/angle_fourier.txt |
| | D | | | doc/html/_sources/angle_fourier_simple.txt |
| | D | | | doc/html/_sources/angle_harmonic.txt |
| | D | | | doc/html/_sources/angle_hybrid.txt |
| | D | | | doc/html/_sources/angle_none.txt |
| | D | | | doc/html/_sources/angle_quartic.txt |
| | D | | | doc/html/_sources/angle_sdk.txt |
| | D | | | doc/html/_sources/angle_style.txt |
| | D | | | doc/html/_sources/angle_table.txt |
| | D | | | doc/html/_sources/angle_zero.txt |
| | D | | | doc/html/_sources/atom_modify.txt |
| | D | | | doc/html/_sources/atom_style.txt |
| | D | | | doc/html/_sources/balance.txt |
| | D | | | doc/html/_sources/body.txt |
| | D | | | doc/html/_sources/bond_class2.txt |
| | D | | | doc/html/_sources/bond_coeff.txt |
| | D | | | doc/html/_sources/bond_fene.txt |
| | D | | | doc/html/_sources/bond_fene_expand.txt |
| | D | | | doc/html/_sources/bond_harmonic.txt |
| | D | | | doc/html/_sources/bond_harmonic_shift.txt |
| | D | | | doc/html/_sources/bond_harmonic_shift_cut.txt |
| | D | | | doc/html/_sources/bond_hybrid.txt |
| | D | | | doc/html/_sources/bond_morse.txt |
| | D | | | doc/html/_sources/bond_none.txt |
| | D | | | doc/html/_sources/bond_nonlinear.txt |
| | D | | | doc/html/_sources/bond_quartic.txt |
| | D | | | doc/html/_sources/bond_style.txt |
| | D | | | doc/html/_sources/bond_table.txt |
| | D | | | doc/html/_sources/bond_write.txt |
| | D | | | doc/html/_sources/bond_zero.txt |
| | D | | | doc/html/_sources/boundary.txt |
| | D | | | doc/html/_sources/box.txt |
| | D | | | doc/html/_sources/change_box.txt |
| | D | | | doc/html/_sources/clear.txt |
| | D | | | doc/html/_sources/comm_modify.txt |
| | D | | | doc/html/_sources/comm_style.txt |
| | D | | | doc/html/_sources/compute.txt |
| | D | | | doc/html/_sources/compute_ackland_atom.txt |
| | D | | | doc/html/_sources/compute_angle.txt |
| | D | | | doc/html/_sources/compute_angle_local.txt |
| | D | | | doc/html/_sources/compute_angmom_chunk.txt |
| | D | | | doc/html/_sources/compute_basal_atom.txt |
| | D | | | doc/html/_sources/compute_body_local.txt |
| | D | | | doc/html/_sources/compute_bond.txt |
| | D | | | doc/html/_sources/compute_bond_local.txt |
| | D | | | doc/html/_sources/compute_centro_atom.txt |
| | D | | | doc/html/_sources/compute_chunk_atom.txt |
| | D | | | doc/html/_sources/compute_cluster_atom.txt |
| | D | | | doc/html/_sources/compute_cna_atom.txt |
| | D | | | doc/html/_sources/compute_com.txt |
| | D | | | doc/html/_sources/compute_com_chunk.txt |
| | D | | | doc/html/_sources/compute_contact_atom.txt |
| | D | | | doc/html/_sources/compute_coord_atom.txt |
| | D | | | doc/html/_sources/compute_damage_atom.txt |
| | D | | | doc/html/_sources/compute_dihedral.txt |
| | D | | | doc/html/_sources/compute_dihedral_local.txt |
| | D | | | doc/html/_sources/compute_dilatation_atom.txt |
| | D | | | doc/html/_sources/compute_dipole_chunk.txt |
| | D | | | doc/html/_sources/compute_displace_atom.txt |
| | D | | | doc/html/_sources/compute_dpd.txt |
| | D | | | doc/html/_sources/compute_dpd_atom.txt |
| | D | | | doc/html/_sources/compute_erotate_asphere.txt |
| | D | | | doc/html/_sources/compute_erotate_rigid.txt |
| | D | | | doc/html/_sources/compute_erotate_sphere.txt |
| | D | | | doc/html/_sources/compute_erotate_sphere_atom.txt |
| | D | | | doc/html/_sources/compute_event_displace.txt |
| | D | | | doc/html/_sources/compute_fep.txt |
| | D | | | doc/html/_sources/compute_group_group.txt |
| | D | | | doc/html/_sources/compute_gyration.txt |
| | D | | | doc/html/_sources/compute_gyration_chunk.txt |
| | D | | | doc/html/_sources/compute_heat_flux.txt |
| | D | | | doc/html/_sources/compute_hexorder_atom.txt |
| | D | | | doc/html/_sources/compute_improper.txt |
| | D | | | doc/html/_sources/compute_improper_local.txt |
| | D | | | doc/html/_sources/compute_inertia_chunk.txt |
| | D | | | doc/html/_sources/compute_ke.txt |
| | D | | | doc/html/_sources/compute_ke_atom.txt |
| | D | | | doc/html/_sources/compute_ke_atom_eff.txt |
| | D | | | doc/html/_sources/compute_ke_eff.txt |
| | D | | | doc/html/_sources/compute_ke_rigid.txt |
| | D | | | doc/html/_sources/compute_meso_e_atom.txt |
| | D | | | doc/html/_sources/compute_meso_rho_atom.txt |
| | D | | | doc/html/_sources/compute_meso_t_atom.txt |
| | D | | | doc/html/_sources/compute_modify.txt |
| | D | | | doc/html/_sources/compute_msd.txt |
| | D | | | doc/html/_sources/compute_msd_chunk.txt |
| | D | | | doc/html/_sources/compute_msd_nongauss.txt |
| | D | | | doc/html/_sources/compute_omega_chunk.txt |
| | D | | | doc/html/_sources/compute_orientorder_atom.txt |
| | D | | | doc/html/_sources/compute_pair.txt |
| | D | | | doc/html/_sources/compute_pair_local.txt |
| | D | | | doc/html/_sources/compute_pe.txt |
| | D | | | doc/html/_sources/compute_pe_atom.txt |
| | D | | | doc/html/_sources/compute_plasticity_atom.txt |
| | D | | | doc/html/_sources/compute_pressure.txt |
| | D | | | doc/html/_sources/compute_property_atom.txt |
| | D | | | doc/html/_sources/compute_property_chunk.txt |
| | D | | | doc/html/_sources/compute_property_local.txt |
| | D | | | doc/html/_sources/compute_rdf.txt |
| | D | | | doc/html/_sources/compute_reduce.txt |
| | D | | | doc/html/_sources/compute_rigid_local.txt |
| | D | | | doc/html/_sources/compute_saed.txt |
| | D | | | doc/html/_sources/compute_slice.txt |
| | D | | | doc/html/_sources/compute_smd_contact_radius.txt |
| | D | | | doc/html/_sources/compute_smd_damage.txt |
| | D | | | doc/html/_sources/compute_smd_hourglass_error.txt |
| | D | | | doc/html/_sources/compute_smd_internal_energy.txt |
| | D | | | doc/html/_sources/compute_smd_plastic_strain.txt |
| | D | | | doc/html/_sources/compute_smd_plastic_strain_rate.txt |
| | D | | | doc/html/_sources/compute_smd_rho.txt |
| | D | | | doc/html/_sources/compute_smd_tlsph_defgrad.txt |
| | D | | | doc/html/_sources/compute_smd_tlsph_dt.txt |
| | D | | | doc/html/_sources/compute_smd_tlsph_num_neighs.txt |
| | D | | | doc/html/_sources/compute_smd_tlsph_shape.txt |
| | D | | | doc/html/_sources/compute_smd_tlsph_strain.txt |
| | D | | | doc/html/_sources/compute_smd_tlsph_strain_rate.txt |
| | D | | | doc/html/_sources/compute_smd_tlsph_stress.txt |
| | D | | | doc/html/_sources/compute_smd_triangle_mesh_vertices.txt |
| | D | | | doc/html/_sources/compute_smd_ulsph_num_neighs.txt |
| | D | | | doc/html/_sources/compute_smd_ulsph_strain.txt |
| | D | | | doc/html/_sources/compute_smd_ulsph_strain_rate.txt |
| | D | | | doc/html/_sources/compute_smd_ulsph_stress.txt |
| | D | | | doc/html/_sources/compute_smd_vol.txt |
| | D | | | doc/html/_sources/compute_sna_atom.txt |
| | D | | | doc/html/_sources/compute_stress_atom.txt |
| | D | | | doc/html/_sources/compute_tally.txt |
| | D | | | doc/html/_sources/compute_temp.txt |
| | D | | | doc/html/_sources/compute_temp_asphere.txt |
| | D | | | doc/html/_sources/compute_temp_body.txt |
| | D | | | doc/html/_sources/compute_temp_chunk.txt |
| | D | | | doc/html/_sources/compute_temp_com.txt |
| | D | | | doc/html/_sources/compute_temp_cs.txt |
| | D | | | doc/html/_sources/compute_temp_deform.txt |
| | D | | | doc/html/_sources/compute_temp_deform_eff.txt |
| | D | | | doc/html/_sources/compute_temp_drude.txt |
| | D | | | doc/html/_sources/compute_temp_eff.txt |
| | D | | | doc/html/_sources/compute_temp_partial.txt |
| | D | | | doc/html/_sources/compute_temp_profile.txt |
| | D | | | doc/html/_sources/compute_temp_ramp.txt |
| | D | | | doc/html/_sources/compute_temp_region.txt |
| | D | | | doc/html/_sources/compute_temp_region_eff.txt |
| | D | | | doc/html/_sources/compute_temp_rotate.txt |
| | D | | | doc/html/_sources/compute_temp_sphere.txt |
| | D | | | doc/html/_sources/compute_ti.txt |
| | D | | | doc/html/_sources/compute_torque_chunk.txt |
| | D | | | doc/html/_sources/compute_vacf.txt |
| | D | | | doc/html/_sources/compute_vcm_chunk.txt |
| | D | | | doc/html/_sources/compute_voronoi_atom.txt |
| | D | | | doc/html/_sources/compute_xrd.txt |
| | D | | | doc/html/_sources/create_atoms.txt |
| | D | | | doc/html/_sources/create_bonds.txt |
| | D | | | doc/html/_sources/create_box.txt |
| | D | | | doc/html/_sources/delete_atoms.txt |
| | D | | | doc/html/_sources/delete_bonds.txt |
| | D | | | doc/html/_sources/dielectric.txt |
| | D | | | doc/html/_sources/dihedral_charmm.txt |
| | D | | | doc/html/_sources/dihedral_class2.txt |
| | D | | | doc/html/_sources/dihedral_coeff.txt |
| | D | | | doc/html/_sources/dihedral_cosine_shift_exp.txt |
| | D | | | doc/html/_sources/dihedral_fourier.txt |
| | D | | | doc/html/_sources/dihedral_harmonic.txt |
| | D | | | doc/html/_sources/dihedral_helix.txt |
| | D | | | doc/html/_sources/dihedral_hybrid.txt |
| | D | | | doc/html/_sources/dihedral_multi_harmonic.txt |
| | D | | | doc/html/_sources/dihedral_nharmonic.txt |
| | D | | | doc/html/_sources/dihedral_none.txt |
| | D | | | doc/html/_sources/dihedral_opls.txt |
| | D | | | doc/html/_sources/dihedral_quadratic.txt |
| | D | | | doc/html/_sources/dihedral_spherical.txt |
| | D | | | doc/html/_sources/dihedral_style.txt |
| | D | | | doc/html/_sources/dihedral_table.txt |
| | D | | | doc/html/_sources/dihedral_zero.txt |
| | D | | | doc/html/_sources/dimension.txt |
| | D | | | doc/html/_sources/displace_atoms.txt |
| | D | | | doc/html/_sources/dump.txt |
| | D | | | doc/html/_sources/dump_custom_vtk.txt |
| | D | | | doc/html/_sources/dump_h5md.txt |
| | D | | | doc/html/_sources/dump_image.txt |
| | D | | | doc/html/_sources/dump_modify.txt |
| | D | | | doc/html/_sources/dump_molfile.txt |
| | D | | | doc/html/_sources/echo.txt |
| | D | | | doc/html/_sources/fix.txt |
| | D | | | doc/html/_sources/fix_adapt.txt |
| | D | | | doc/html/_sources/fix_adapt_fep.txt |
| | D | | | doc/html/_sources/fix_addforce.txt |
| | D | | | doc/html/_sources/fix_addtorque.txt |
| | D | | | doc/html/_sources/fix_append_atoms.txt |
| | D | | | doc/html/_sources/fix_atc.txt |
| | D | | | doc/html/_sources/fix_atom_swap.txt |
| | D | | | doc/html/_sources/fix_ave_atom.txt |
| | D | | | doc/html/_sources/fix_ave_chunk.txt |
| | D | | | doc/html/_sources/fix_ave_correlate.txt |
| | D | | | doc/html/_sources/fix_ave_correlate_long.txt |
| | D | | | doc/html/_sources/fix_ave_histo.txt |
| | D | | | doc/html/_sources/fix_ave_time.txt |
| | D | | | doc/html/_sources/fix_aveforce.txt |
| | D | | | doc/html/_sources/fix_balance.txt |
| | D | | | doc/html/_sources/fix_bond_break.txt |
| | D | | | doc/html/_sources/fix_bond_create.txt |
| | D | | | doc/html/_sources/fix_bond_swap.txt |
| | D | | | doc/html/_sources/fix_box_relax.txt |
| | D | | | doc/html/_sources/fix_colvars.txt |
| | D | | | doc/html/_sources/fix_controller.txt |
| | D | | | doc/html/_sources/fix_deform.txt |
| | D | | | doc/html/_sources/fix_deposit.txt |
| | D | | | doc/html/_sources/fix_drag.txt |
| | D | | | doc/html/_sources/fix_drude.txt |
| | D | | | doc/html/_sources/fix_drude_transform.txt |
| | D | | | doc/html/_sources/fix_dt_reset.txt |
| | D | | | doc/html/_sources/fix_efield.txt |
| | D | | | doc/html/_sources/fix_ehex.txt |
| | D | | | doc/html/_sources/fix_enforce2d.txt |
| | D | | | doc/html/_sources/fix_eos_cv.txt |
| | D | | | doc/html/_sources/fix_eos_table.txt |
| | D | | | doc/html/_sources/fix_eos_table_rx.txt |
| | D | | | doc/html/_sources/fix_evaporate.txt |
| | D | | | doc/html/_sources/fix_external.txt |
| | D | | | doc/html/_sources/fix_freeze.txt |
| | D | | | doc/html/_sources/fix_gcmc.txt |
| | D | | | doc/html/_sources/fix_gld.txt |
| | D | | | doc/html/_sources/fix_gle.txt |
| | D | | | doc/html/_sources/fix_gravity.txt |
| | D | | | doc/html/_sources/fix_heat.txt |
| | D | | | doc/html/_sources/fix_imd.txt |
| | D | | | doc/html/_sources/fix_indent.txt |
| | D | | | doc/html/_sources/fix_ipi.txt |
| | D | | | doc/html/_sources/fix_langevin.txt |
| | D | | | doc/html/_sources/fix_langevin_drude.txt |
| | D | | | doc/html/_sources/fix_langevin_eff.txt |
| | D | | | doc/html/_sources/fix_lb_fluid.txt |
| | D | | | doc/html/_sources/fix_lb_momentum.txt |
| | D | | | doc/html/_sources/fix_lb_pc.txt |
| | D | | | doc/html/_sources/fix_lb_rigid_pc_sphere.txt |
| | D | | | doc/html/_sources/fix_lb_viscous.txt |
| | D | | | doc/html/_sources/fix_lineforce.txt |
| | D | | | doc/html/_sources/fix_manifoldforce.txt |
| | D | | | doc/html/_sources/fix_meso.txt |
| | D | | | doc/html/_sources/fix_meso_stationary.txt |
| | D | | | doc/html/_sources/fix_modify.txt |
| | D | | | doc/html/_sources/fix_momentum.txt |
| | D | | | doc/html/_sources/fix_move.txt |
| | D | | | doc/html/_sources/fix_msst.txt |
| | D | | | doc/html/_sources/fix_neb.txt |
| | D | | | doc/html/_sources/fix_nh.txt |
| | D | | | doc/html/_sources/fix_nh_eff.txt |
| | D | | | doc/html/_sources/fix_nph_asphere.txt |
| | D | | | doc/html/_sources/fix_nph_body.txt |
| | D | | | doc/html/_sources/fix_nph_sphere.txt |
| | D | | | doc/html/_sources/fix_nphug.txt |
| | D | | | doc/html/_sources/fix_npt_asphere.txt |
| | D | | | doc/html/_sources/fix_npt_body.txt |
| | D | | | doc/html/_sources/fix_npt_sphere.txt |
| | D | | | doc/html/_sources/fix_nve.txt |
| | D | | | doc/html/_sources/fix_nve_asphere.txt |
| | D | | | doc/html/_sources/fix_nve_asphere_noforce.txt |
| | D | | | doc/html/_sources/fix_nve_body.txt |
| | D | | | doc/html/_sources/fix_nve_eff.txt |
| | D | | | doc/html/_sources/fix_nve_limit.txt |
| | D | | | doc/html/_sources/fix_nve_line.txt |
| | D | | | doc/html/_sources/fix_nve_manifold_rattle.txt |
| | D | | | doc/html/_sources/fix_nve_noforce.txt |
| | D | | | doc/html/_sources/fix_nve_sphere.txt |
| | D | | | doc/html/_sources/fix_nve_tri.txt |
| | D | | | doc/html/_sources/fix_nvt_asphere.txt |
| | D | | | doc/html/_sources/fix_nvt_body.txt |
| | D | | | doc/html/_sources/fix_nvt_manifold_rattle.txt |
| | D | | | doc/html/_sources/fix_nvt_sllod.txt |
| | D | | | doc/html/_sources/fix_nvt_sllod_eff.txt |
| | D | | | doc/html/_sources/fix_nvt_sphere.txt |
| | D | | | doc/html/_sources/fix_oneway.txt |
| | D | | | doc/html/_sources/fix_orient.txt |
| | D | | | doc/html/_sources/fix_phonon.txt |
| | D | | | doc/html/_sources/fix_pimd.txt |
| | D | | | doc/html/_sources/fix_planeforce.txt |
| | D | | | doc/html/_sources/fix_poems.txt |
| | D | | | doc/html/_sources/fix_pour.txt |
| | D | | | doc/html/_sources/fix_press_berendsen.txt |
| | D | | | doc/html/_sources/fix_print.txt |
| | D | | | doc/html/_sources/fix_property_atom.txt |
| | D | | | doc/html/_sources/fix_qbmsst.txt |
| | D | | | doc/html/_sources/fix_qeq.txt |
| | D | | | doc/html/_sources/fix_qeq_comb.txt |
| | D | | | doc/html/_sources/fix_qeq_reax.txt |
| | D | | | doc/html/_sources/fix_qmmm.txt |
| | D | | | doc/html/_sources/fix_qtb.txt |
| | D | | | doc/html/_sources/fix_reax_bonds.txt |
| | D | | | doc/html/_sources/fix_reaxc_species.txt |
| | D | | | doc/html/_sources/fix_recenter.txt |
| | D | | | doc/html/_sources/fix_restrain.txt |
| | D | | | doc/html/_sources/fix_rigid.txt |
| | D | | | doc/html/_sources/fix_rx.txt |
| | D | | | doc/html/_sources/fix_saed_vtk.txt |
| | D | | | doc/html/_sources/fix_setforce.txt |
| | D | | | doc/html/_sources/fix_shake.txt |
| | D | | | doc/html/_sources/fix_shardlow.txt |
| | D | | | doc/html/_sources/fix_smd.txt |
| | D | | | doc/html/_sources/fix_smd_adjust_dt.txt |
| | D | | | doc/html/_sources/fix_smd_integrate_tlsph.txt |
| | D | | | doc/html/_sources/fix_smd_integrate_ulsph.txt |
| | D | | | doc/html/_sources/fix_smd_move_triangulated_surface.txt |
| | D | | | doc/html/_sources/fix_smd_setvel.txt |
| | D | | | doc/html/_sources/fix_smd_tlsph_reference_configuration.txt |
| | D | | | doc/html/_sources/fix_smd_wall_surface.txt |
| | D | | | doc/html/_sources/fix_spring.txt |
| | D | | | doc/html/_sources/fix_spring_chunk.txt |
| | D | | | doc/html/_sources/fix_spring_rg.txt |
| | D | | | doc/html/_sources/fix_spring_self.txt |
| | D | | | doc/html/_sources/fix_srd.txt |
| | D | | | doc/html/_sources/fix_store_force.txt |
| | D | | | doc/html/_sources/fix_store_state.txt |
| | D | | | doc/html/_sources/fix_temp_berendsen.txt |
| | D | | | doc/html/_sources/fix_temp_csvr.txt |
| | D | | | doc/html/_sources/fix_temp_rescale.txt |
| | D | | | doc/html/_sources/fix_temp_rescale_eff.txt |
| | D | | | doc/html/_sources/fix_tfmc.txt |
| | D | | | doc/html/_sources/fix_thermal_conductivity.txt |
| | D | | | doc/html/_sources/fix_ti_rs.txt |
| | D | | | doc/html/_sources/fix_ti_spring.txt |
| | D | | | doc/html/_sources/fix_tmd.txt |
| | D | | | doc/html/_sources/fix_ttm.txt |
| | D | | | doc/html/_sources/fix_tune_kspace.txt |
| | D | | | doc/html/_sources/fix_vector.txt |
| | D | | | doc/html/_sources/fix_viscosity.txt |
| | D | | | doc/html/_sources/fix_viscous.txt |
| | D | | | doc/html/_sources/fix_wall.txt |
| | D | | | doc/html/_sources/fix_wall_gran.txt |
| | D | | | doc/html/_sources/fix_wall_piston.txt |
| | D | | | doc/html/_sources/fix_wall_reflect.txt |
| | D | | | doc/html/_sources/fix_wall_region.txt |
| | D | | | doc/html/_sources/fix_wall_srd.txt |
| | D | | | doc/html/_sources/group.txt |
| | D | | | doc/html/_sources/group2ndx.txt |
| | D | | | doc/html/_sources/if.txt |
| | D | | | doc/html/_sources/improper_class2.txt |
| | D | | | doc/html/_sources/improper_coeff.txt |
| | D | | | doc/html/_sources/improper_cossq.txt |
| | D | | | doc/html/_sources/improper_cvff.txt |
| | D | | | doc/html/_sources/improper_distance.txt |
| | D | | | doc/html/_sources/improper_fourier.txt |
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