| | | | Path |
|---|
| | M | | | doc/html/Manual.html |
| | M | | | doc/html/Section_accelerate.html |
| | M | | | doc/html/Section_commands.html |
| | M | | | doc/html/Section_errors.html |
| | M | | | doc/html/Section_example.html |
| | M | | | doc/html/Section_history.html |
| | M | | | doc/html/Section_howto.html |
| | M | | | doc/html/Section_intro.html |
| | M | | | doc/html/Section_modify.html |
| | M | | | doc/html/Section_packages.html |
| | M | | | doc/html/Section_perf.html |
| | M | | | doc/html/Section_python.html |
| | P | | | doc/html/Section_start.html Copied from doc/html/fix_smd_tlsph_reference_configuration.html |
| | M | | | doc/html/Section_tools.html |
| | M | | | doc/html/_sources/Manual.txt |
| | M | | | doc/html/_sources/Section_start.txt |
| | M | | | doc/html/_sources/compute_sna_atom.txt |
| | M | | | doc/html/accelerate_gpu.html |
| | M | | | doc/html/accelerate_intel.html |
| | M | | | doc/html/accelerate_kokkos.html |
| | M | | | doc/html/accelerate_omp.html |
| | M | | | doc/html/accelerate_opt.html |
| | M | | | doc/html/angle_charmm.html |
| | M | | | doc/html/angle_class2.html |
| | M | | | doc/html/angle_coeff.html |
| | M | | | doc/html/angle_cosine.html |
| | M | | | doc/html/angle_cosine_delta.html |
| | M | | | doc/html/angle_cosine_periodic.html |
| | M | | | doc/html/angle_cosine_shift.html |
| | M | | | doc/html/angle_cosine_shift_exp.html |
| | M | | | doc/html/angle_cosine_squared.html |
| | M | | | doc/html/angle_dipole.html |
| | M | | | doc/html/angle_fourier.html |
| | M | | | doc/html/angle_fourier_simple.html |
| | M | | | doc/html/angle_harmonic.html |
| | M | | | doc/html/angle_hybrid.html |
| | M | | | doc/html/angle_none.html |
| | M | | | doc/html/angle_quartic.html |
| | M | | | doc/html/angle_sdk.html |
| | M | | | doc/html/angle_style.html |
| | M | | | doc/html/angle_table.html |
| | M | | | doc/html/angle_zero.html |
| | M | | | doc/html/atom_modify.html |
| | M | | | doc/html/atom_style.html |
| | M | | | doc/html/balance.html |
| | M | | | doc/html/body.html |
| | M | | | doc/html/bond_class2.html |
| | M | | | doc/html/bond_coeff.html |
| | M | | | doc/html/bond_fene.html |
| | M | | | doc/html/bond_fene_expand.html |
| | M | | | doc/html/bond_harmonic.html |
| | M | | | doc/html/bond_harmonic_shift.html |
| | M | | | doc/html/bond_harmonic_shift_cut.html |
| | M | | | doc/html/bond_hybrid.html |
| | M | | | doc/html/bond_morse.html |
| | M | | | doc/html/bond_none.html |
| | M | | | doc/html/bond_nonlinear.html |
| | M | | | doc/html/bond_quartic.html |
| | M | | | doc/html/bond_style.html |
| | M | | | doc/html/bond_table.html |
| | M | | | doc/html/bond_write.html |
| | M | | | doc/html/bond_zero.html |
| | M | | | doc/html/boundary.html |
| | M | | | doc/html/box.html |
| | M | | | doc/html/change_box.html |
| | M | | | doc/html/clear.html |
| | M | | | doc/html/comm_modify.html |
| | M | | | doc/html/comm_style.html |
| | M | | | doc/html/compute.html |
| | M | | | doc/html/compute_ackland_atom.html |
| | M | | | doc/html/compute_angle.html |
| | M | | | doc/html/compute_angle_local.html |
| | M | | | doc/html/compute_angmom_chunk.html |
| | M | | | doc/html/compute_basal_atom.html |
| | M | | | doc/html/compute_body_local.html |
| | M | | | doc/html/compute_bond.html |
| | M | | | doc/html/compute_bond_local.html |
| | M | | | doc/html/compute_centro_atom.html |
| | M | | | doc/html/compute_chunk_atom.html |
| | M | | | doc/html/compute_cluster_atom.html |
| | M | | | doc/html/compute_cna_atom.html |
| | M | | | doc/html/compute_com.html |
| | M | | | doc/html/compute_com_chunk.html |
| | M | | | doc/html/compute_contact_atom.html |
| | M | | | doc/html/compute_coord_atom.html |
| | M | | | doc/html/compute_damage_atom.html |
| | M | | | doc/html/compute_dihedral.html |
| | M | | | doc/html/compute_dihedral_local.html |
| | M | | | doc/html/compute_dilatation_atom.html |
| | M | | | doc/html/compute_dipole_chunk.html |
| | M | | | doc/html/compute_displace_atom.html |
| | M | | | doc/html/compute_dpd.html |
| | M | | | doc/html/compute_dpd_atom.html |
| | M | | | doc/html/compute_erotate_asphere.html |
| | M | | | doc/html/compute_erotate_rigid.html |
| | M | | | doc/html/compute_erotate_sphere.html |
| | M | | | doc/html/compute_erotate_sphere_atom.html |
| | M | | | doc/html/compute_event_displace.html |
| | M | | | doc/html/compute_fep.html |
| | M | | | doc/html/compute_group_group.html |
| | M | | | doc/html/compute_gyration.html |
| | M | | | doc/html/compute_gyration_chunk.html |
| | M | | | doc/html/compute_heat_flux.html |
| | M | | | doc/html/compute_hexorder_atom.html |
| | M | | | doc/html/compute_improper.html |
| | M | | | doc/html/compute_improper_local.html |
| | M | | | doc/html/compute_inertia_chunk.html |
| | M | | | doc/html/compute_ke.html |
| | M | | | doc/html/compute_ke_atom.html |
| | M | | | doc/html/compute_ke_atom_eff.html |
| | M | | | doc/html/compute_ke_eff.html |
| | M | | | doc/html/compute_ke_rigid.html |
| | M | | | doc/html/compute_meso_e_atom.html |
| | M | | | doc/html/compute_meso_rho_atom.html |
| | M | | | doc/html/compute_meso_t_atom.html |
| | M | | | doc/html/compute_modify.html |
| | M | | | doc/html/compute_msd.html |
| | M | | | doc/html/compute_msd_chunk.html |
| | M | | | doc/html/compute_msd_nongauss.html |
| | M | | | doc/html/compute_omega_chunk.html |
| | M | | | doc/html/compute_orientorder_atom.html |
| | M | | | doc/html/compute_pair.html |
| | M | | | doc/html/compute_pair_local.html |
| | M | | | doc/html/compute_pe.html |
| | M | | | doc/html/compute_pe_atom.html |
| | M | | | doc/html/compute_plasticity_atom.html |
| | M | | | doc/html/compute_pressure.html |
| | M | | | doc/html/compute_property_atom.html |
| | M | | | doc/html/compute_property_chunk.html |
| | M | | | doc/html/compute_property_local.html |
| | M | | | doc/html/compute_rdf.html |
| | M | | | doc/html/compute_reduce.html |
| | M | | | doc/html/compute_rigid_local.html |
| | M | | | doc/html/compute_saed.html |
| | M | | | doc/html/compute_slice.html |
| | M | | | doc/html/compute_smd_contact_radius.html |
| | M | | | doc/html/compute_smd_damage.html |
| | M | | | doc/html/compute_smd_hourglass_error.html |
| | M | | | doc/html/compute_smd_internal_energy.html |
| | M | | | doc/html/compute_smd_plastic_strain.html |
| | M | | | doc/html/compute_smd_plastic_strain_rate.html |
| | M | | | doc/html/compute_smd_rho.html |
| | M | | | doc/html/compute_smd_tlsph_defgrad.html |
| | M | | | doc/html/compute_smd_tlsph_dt.html |
| | M | | | doc/html/compute_smd_tlsph_num_neighs.html |
| | M | | | doc/html/compute_smd_tlsph_shape.html |
| | M | | | doc/html/compute_smd_tlsph_strain.html |
| | M | | | doc/html/compute_smd_tlsph_strain_rate.html |
| | M | | | doc/html/compute_smd_tlsph_stress.html |
| | M | | | doc/html/compute_smd_triangle_mesh_vertices.html |
| | M | | | doc/html/compute_smd_ulsph_num_neighs.html |
| | M | | | doc/html/compute_smd_ulsph_strain.html |
| | M | | | doc/html/compute_smd_ulsph_strain_rate.html |
| | M | | | doc/html/compute_smd_ulsph_stress.html |
| | M | | | doc/html/compute_smd_vol.html |
| | P | | | doc/html/compute_sna_atom.html Copied from doc/html/fix_smd_tlsph_reference_configuration.html |
| | M | | | doc/html/compute_stress_atom.html |
| | M | | | doc/html/compute_tally.html |
| | M | | | doc/html/compute_temp.html |
| | M | | | doc/html/compute_temp_asphere.html |
| | M | | | doc/html/compute_temp_body.html |
| | M | | | doc/html/compute_temp_chunk.html |
| | M | | | doc/html/compute_temp_com.html |
| | M | | | doc/html/compute_temp_cs.html |
| | M | | | doc/html/compute_temp_deform.html |
| | M | | | doc/html/compute_temp_deform_eff.html |
| | M | | | doc/html/compute_temp_drude.html |
| | M | | | doc/html/compute_temp_eff.html |
| | M | | | doc/html/compute_temp_partial.html |
| | M | | | doc/html/compute_temp_profile.html |
| | M | | | doc/html/compute_temp_ramp.html |
| | M | | | doc/html/compute_temp_region.html |
| | M | | | doc/html/compute_temp_region_eff.html |
| | M | | | doc/html/compute_temp_rotate.html |
| | M | | | doc/html/compute_temp_sphere.html |
| | M | | | doc/html/compute_ti.html |
| | M | | | doc/html/compute_torque_chunk.html |
| | M | | | doc/html/compute_vacf.html |
| | M | | | doc/html/compute_vcm_chunk.html |
| | M | | | doc/html/compute_voronoi_atom.html |
| | M | | | doc/html/compute_xrd.html |
| | M | | | doc/html/create_atoms.html |
| | M | | | doc/html/create_bonds.html |
| | M | | | doc/html/create_box.html |
| | M | | | doc/html/delete_atoms.html |
| | M | | | doc/html/delete_bonds.html |
| | M | | | doc/html/dielectric.html |
| | M | | | doc/html/dihedral_charmm.html |
| | M | | | doc/html/dihedral_class2.html |
| | M | | | doc/html/dihedral_coeff.html |
| | M | | | doc/html/dihedral_cosine_shift_exp.html |
| | M | | | doc/html/dihedral_fourier.html |
| | M | | | doc/html/dihedral_harmonic.html |
| | M | | | doc/html/dihedral_helix.html |
| | M | | | doc/html/dihedral_hybrid.html |
| | M | | | doc/html/dihedral_multi_harmonic.html |
| | M | | | doc/html/dihedral_nharmonic.html |
| | M | | | doc/html/dihedral_none.html |
| | M | | | doc/html/dihedral_opls.html |
| | M | | | doc/html/dihedral_quadratic.html |
| | M | | | doc/html/dihedral_spherical.html |
| | M | | | doc/html/dihedral_style.html |
| | M | | | doc/html/dihedral_table.html |
| | M | | | doc/html/dihedral_zero.html |
| | M | | | doc/html/dimension.html |
| | M | | | doc/html/displace_atoms.html |
| | M | | | doc/html/dump.html |
| | M | | | doc/html/dump_custom_vtk.html |
| | M | | | doc/html/dump_h5md.html |
| | M | | | doc/html/dump_image.html |
| | M | | | doc/html/dump_modify.html |
| | M | | | doc/html/dump_molfile.html |
| | M | | | doc/html/echo.html |
| | M | | | doc/html/fix.html |
| | M | | | doc/html/fix_adapt.html |
| | M | | | doc/html/fix_adapt_fep.html |
| | M | | | doc/html/fix_addforce.html |
| | M | | | doc/html/fix_addtorque.html |
| | M | | | doc/html/fix_append_atoms.html |
| | M | | | doc/html/fix_atc.html |
| | M | | | doc/html/fix_atom_swap.html |
| | M | | | doc/html/fix_ave_atom.html |
| | M | | | doc/html/fix_ave_chunk.html |
| | M | | | doc/html/fix_ave_correlate.html |
| | M | | | doc/html/fix_ave_correlate_long.html |
| | M | | | doc/html/fix_ave_histo.html |
| | M | | | doc/html/fix_ave_time.html |
| | M | | | doc/html/fix_aveforce.html |
| | M | | | doc/html/fix_balance.html |
| | M | | | doc/html/fix_bond_break.html |
| | M | | | doc/html/fix_bond_create.html |
| | M | | | doc/html/fix_bond_swap.html |
| | M | | | doc/html/fix_box_relax.html |
| | M | | | doc/html/fix_colvars.html |
| | M | | | doc/html/fix_controller.html |
| | M | | | doc/html/fix_deform.html |
| | M | | | doc/html/fix_deposit.html |
| | M | | | doc/html/fix_drag.html |
| | M | | | doc/html/fix_drude.html |
| | M | | | doc/html/fix_drude_transform.html |
| | M | | | doc/html/fix_dt_reset.html |
| | M | | | doc/html/fix_efield.html |
| | M | | | doc/html/fix_ehex.html |
| | M | | | doc/html/fix_enforce2d.html |
| | M | | | doc/html/fix_eos_cv.html |
| | M | | | doc/html/fix_eos_table.html |
| | M | | | doc/html/fix_eos_table_rx.html |
| | M | | | doc/html/fix_evaporate.html |
| | M | | | doc/html/fix_external.html |
| | M | | | doc/html/fix_freeze.html |
| | M | | | doc/html/fix_gcmc.html |
| | M | | | doc/html/fix_gld.html |
| | M | | | doc/html/fix_gle.html |
| | M | | | doc/html/fix_gravity.html |
| | M | | | doc/html/fix_heat.html |
| | M | | | doc/html/fix_imd.html |
| | M | | | doc/html/fix_indent.html |
| | M | | | doc/html/fix_ipi.html |
| | M | | | doc/html/fix_langevin.html |
| | M | | | doc/html/fix_langevin_drude.html |
| | M | | | doc/html/fix_langevin_eff.html |
| | M | | | doc/html/fix_lb_fluid.html |
| | M | | | doc/html/fix_lb_momentum.html |
| | M | | | doc/html/fix_lb_pc.html |
| | M | | | doc/html/fix_lb_rigid_pc_sphere.html |
| | M | | | doc/html/fix_lb_viscous.html |
| | M | | | doc/html/fix_lineforce.html |
| | M | | | doc/html/fix_manifoldforce.html |
| | M | | | doc/html/fix_meso.html |
| | M | | | doc/html/fix_meso_stationary.html |
| | M | | | doc/html/fix_modify.html |
| | M | | | doc/html/fix_momentum.html |
| | M | | | doc/html/fix_move.html |
| | M | | | doc/html/fix_msst.html |
| | M | | | doc/html/fix_neb.html |
| | M | | | doc/html/fix_nh.html |
| | M | | | doc/html/fix_nh_eff.html |
| | M | | | doc/html/fix_nph_asphere.html |
| | M | | | doc/html/fix_nph_body.html |
| | M | | | doc/html/fix_nph_sphere.html |
| | M | | | doc/html/fix_nphug.html |
| | M | | | doc/html/fix_npt_asphere.html |
| | M | | | doc/html/fix_npt_body.html |
| | M | | | doc/html/fix_npt_sphere.html |
| | M | | | doc/html/fix_nve.html |
| | M | | | doc/html/fix_nve_asphere.html |
| | M | | | doc/html/fix_nve_asphere_noforce.html |
| | M | | | doc/html/fix_nve_body.html |
| | M | | | doc/html/fix_nve_eff.html |
| | M | | | doc/html/fix_nve_limit.html |
| | M | | | doc/html/fix_nve_line.html |
| | M | | | doc/html/fix_nve_manifold_rattle.html |
| | M | | | doc/html/fix_nve_noforce.html |
| | M | | | doc/html/fix_nve_sphere.html |
| | M | | | doc/html/fix_nve_tri.html |
| | M | | | doc/html/fix_nvt_asphere.html |
| | M | | | doc/html/fix_nvt_body.html |
| | M | | | doc/html/fix_nvt_manifold_rattle.html |
| | M | | | doc/html/fix_nvt_sllod.html |
| | M | | | doc/html/fix_nvt_sllod_eff.html |
| | M | | | doc/html/fix_nvt_sphere.html |
| | M | | | doc/html/fix_oneway.html |
| | M | | | doc/html/fix_orient.html |
| | M | | | doc/html/fix_phonon.html |
| | M | | | doc/html/fix_pimd.html |
| | M | | | doc/html/fix_planeforce.html |
| | M | | | doc/html/fix_poems.html |
| | M | | | doc/html/fix_pour.html |
| | M | | | doc/html/fix_press_berendsen.html |
| | M | | | doc/html/fix_print.html |
| | M | | | doc/html/fix_property_atom.html |
| | M | | | doc/html/fix_qbmsst.html |
| | M | | | doc/html/fix_qeq.html |
| | M | | | doc/html/fix_qeq_comb.html |
| | M | | | doc/html/fix_qeq_reax.html |
| | M | | | doc/html/fix_qmmm.html |
| | M | | | doc/html/fix_qtb.html |
| | M | | | doc/html/fix_reaxc_bonds.html |
| | M | | | doc/html/fix_reaxc_species.html |
| | M | | | doc/html/fix_recenter.html |
| | M | | | doc/html/fix_restrain.html |
| | M | | | doc/html/fix_rigid.html |
| | M | | | doc/html/fix_rx.html |
| | M | | | doc/html/fix_saed_vtk.html |
| | M | | | doc/html/fix_setforce.html |
| | M | | | doc/html/fix_shake.html |
| | M | | | doc/html/fix_shardlow.html |
| | M | | | doc/html/fix_smd.html |
| | M | | | doc/html/fix_smd_adjust_dt.html |
| | M | | | doc/html/fix_smd_integrate_tlsph.html |
| | M | | | doc/html/fix_smd_integrate_ulsph.html |
| | M | | | doc/html/fix_smd_move_triangulated_surface.html |
| | M | | | doc/html/fix_smd_setvel.html |
| | P | | | doc/html/fix_smd_tlsph_reference_configuration.html Copied to multiple locations:
doc/html/Section_start.html
doc/html/compute_sna_atom.html |
| | M | | | doc/html/fix_smd_wall_surface.html |
| | M | | | doc/html/fix_spring.html |
| | M | | | doc/html/fix_spring_chunk.html |
| | M | | | doc/html/fix_spring_rg.html |
| | M | | | doc/html/fix_spring_self.html |
| | M | | | doc/html/fix_srd.html |
| | M | | | doc/html/fix_store_force.html |
| | M | | | doc/html/fix_store_state.html |
| | M | | | doc/html/fix_temp_berendsen.html |
| | M | | | doc/html/fix_temp_csvr.html |
| | M | | | doc/html/fix_temp_rescale.html |
| | M | | | doc/html/fix_temp_rescale_eff.html |
| | M | | | doc/html/fix_tfmc.html |
| | M | | | doc/html/fix_thermal_conductivity.html |
| | M | | | doc/html/fix_ti_rs.html |
| | M | | | doc/html/fix_ti_spring.html |
| | M | | | doc/html/fix_tmd.html |
| | M | | | doc/html/fix_ttm.html |
| | M | | | doc/html/fix_tune_kspace.html |
| | M | | | doc/html/fix_vector.html |
| | M | | | doc/html/fix_viscosity.html |
| | M | | | doc/html/fix_viscous.html |
| | M | | | doc/html/fix_wall.html |
| | M | | | doc/html/fix_wall_gran.html |
| | M | | | doc/html/fix_wall_piston.html |
| | M | | | doc/html/fix_wall_reflect.html |
| | M | | | doc/html/fix_wall_region.html |
| | M | | | doc/html/fix_wall_srd.html |
| | M | | | doc/html/genindex.html |
| | M | | | doc/html/group.html |
| | M | | | doc/html/group2ndx.html |
| | M | | | doc/html/if.html |
| | M | | | doc/html/improper_class2.html |
| | M | | | doc/html/improper_coeff.html |
| | M | | | doc/html/improper_cossq.html |
| | M | | | doc/html/improper_cvff.html |
| | M | | | doc/html/improper_distance.html |
| | M | | | doc/html/improper_fourier.html |
| | M | | | doc/html/improper_harmonic.html |
| | M | | | doc/html/improper_hybrid.html |
| | M | | | doc/html/improper_none.html |
| | M | | | doc/html/improper_ring.html |
| | M | | | doc/html/improper_style.html |
| | M | | | doc/html/improper_umbrella.html |
| | M | | | doc/html/improper_zero.html |
| | M | | | doc/html/include.html |
| | M | | | doc/html/info.html |
| | M | | | doc/html/jump.html |
| | M | | | doc/html/kspace_modify.html |
| | M | | | doc/html/kspace_style.html |
| | M | | | doc/html/label.html |
| | M | | | doc/html/lattice.html |
| | M | | | doc/html/log.html |
| | M | | | doc/html/manifolds.html |
| | M | | | doc/html/mass.html |
| | M | | | doc/html/min_modify.html |
| | M | | | doc/html/min_style.html |
| | M | | | doc/html/minimize.html |
| | M | | | doc/html/molecule.html |
| | M | | | doc/html/neb.html |
| | M | | | doc/html/neigh_modify.html |
| | M | | | doc/html/neighbor.html |
| | M | | | doc/html/newton.html |
| | M | | | doc/html/next.html |
| | M | | | doc/html/package.html |
| | M | | | doc/html/pair_adp.html |
| | M | | | doc/html/pair_airebo.html |
| | M | | | doc/html/pair_awpmd.html |
| | M | | | doc/html/pair_beck.html |
| | M | | | doc/html/pair_body.html |
| | M | | | doc/html/pair_bop.html |
| | M | | | doc/html/pair_born.html |
| | M | | | doc/html/pair_brownian.html |
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| | M | | | doc/html/pair_charmm.html |
| | M | | | doc/html/pair_class2.html |
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| | M | | | doc/html/pair_eff.html |
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| | M | | | doc/html/pair_meam.html |
| | M | | | doc/html/pair_meam_spline.html |
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| | M | | | doc/html/pair_sdk.html |
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| | M | | | doc/html/pair_srp.html |
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| | M | | | doc/html/pair_sw.html |
| | M | | | doc/html/pair_table.html |
| | M | | | doc/html/pair_table_rx.html |
| | M | | | doc/html/pair_tersoff.html |
| | M | | | doc/html/pair_tersoff_mod.html |
| | M | | | doc/html/pair_tersoff_zbl.html |
| | M | | | doc/html/pair_thole.html |
| | M | | | doc/html/pair_tri_lj.html |
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| | M | | | doc/html/pair_yukawa_colloid.html |
| | M | | | doc/html/pair_zbl.html |
| | M | | | doc/html/pair_zero.html |
| | M | | | doc/html/partition.html |
| | M | | | doc/html/prd.html |
| | M | | | doc/html/print.html |
| | M | | | doc/html/processors.html |
| | M | | | doc/html/python.html |
| | M | | | doc/html/quit.html |
| | M | | | doc/html/read_data.html |
| | M | | | doc/html/read_dump.html |
| | M | | | doc/html/read_restart.html |
| | M | | | doc/html/region.html |
| | M | | | doc/html/replicate.html |
| | M | | | doc/html/rerun.html |
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| | M | | | doc/html/restart.html |
| | M | | | doc/html/run.html |
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| | M | | | doc/html/search.html |
| | M | | | doc/html/searchindex.js |
| | M | | | doc/html/set.html |
| | M | | | doc/html/shell.html |
| | M | | | doc/html/special_bonds.html |
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| | M | | | doc/html/temper.html |
| | M | | | doc/html/thermo.html |
| | M | | | doc/html/thermo_modify.html |
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| | M | | | doc/html/timestep.html |
| | M | | | doc/html/tutorial_drude.html |
| | M | | | doc/html/tutorial_github.html |
| | M | | | doc/html/uncompute.html |
| | M | | | doc/html/undump.html |
| | M | | | doc/html/unfix.html |
| | M | | | doc/html/units.html |
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| | M | | | doc/html/write_dump.html |
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| | M | | | doc/src/Manual.txt |
| | M | | | src/KOKKOS/Install.sh |
| | M | | | src/finish.cpp |
| | M | | | src/lammps.cpp |
| | M | | | src/version.h |