Homec4science

Minor updates in documentation and setup tool, merge before upgrade to oxDNA2

Authored by Oliver Henrich <o.henrich@epcc.ed.ac.uk> on Mar 14 2017, 12:39.

Description

Minor updates in documentation and setup tool, merge before upgrade to oxDNA2

Event Timeline

Oliver Henrich <o.henrich@epcc.ed.ac.uk> committed rLAMMPS7a75cd111c3d: Minor updates in documentation and setup tool, merge before upgrade to oxDNA2 (authored by Oliver Henrich <o.henrich@epcc.ed.ac.uk>).Mar 14 2017, 12:39

Merged Changes

This commit merges a very large number of changes. Only the first 50 are shown.
CommitAuthorDetailsCommitted
f871ecdc67dbSteve Plimpton
change to RCB cuts in load-balancing commands, also a new option for fix halt 
Mar 10 2017
470353e32080sjplimp/GitHub
Merge pull request #408 from giacomofiorin/colvars-update-2017-03-10 
Mar 10 2017
ffe02d20ca83sjplimp/GitHub
Merge pull request #406 from stanmoore1/kokkos_bugfix 
Mar 10 2017
f70752c18f8dGiacomo Fiorin
Include PDF of Colvars doc missing in previous commit 
Mar 10 2017
07fcfd6d54a1sjplimp/GitHub
Merge pull request #405 from stanmoore1/ev_setup_kk 
Mar 10 2017
c97feafca6acsjplimp/GitHub
Merge pull request #407 from frobnitzem/master 
Mar 10 2017
b20d95d49548sjplimp/GitHub
Merge pull request #402 from timattox/USER-DPD_spelling 
Mar 10 2017
0b4adaa9e6a1Giacomo Fiorin
Backport typo fixes that were not previously pushed to the Colvars repository 
Mar 10 2017
5fe620663813Giacomo Fiorin
Update Colvars module to version 2017-03-10 
Mar 10 2017
65964f3b31eaDavid M. Rogers
Add error check to lammps_gather_atoms/lammps_scatter_atoms in library.cpp 
Mar 9 2017
b28b84d444a4Stan Moore
Fix half from full nlist issue with Kokkos 
Mar 9 2017
a001a5ceb0c4Stan Moore
Fixing memory overflow issue in comm_kokkos 
Mar 9 2017
2ef713ea1b49Axel Kohlmeyer
restore incorrect change due to spell checking in fix imd 
Mar 8 2017
1f6c1942b37eStan Moore
Disable allocation of per-atom arrays in ev_setup for Kokkos styles 
Mar 8 2017
683023d8203fStan Moore
Adding alloc flag to ev_setup 
Mar 8 2017
42d3a8f4982dTim Mattox
Fix spelling "correction" from 3a054d1a: iterations not interactions. :-) 
Mar 7 2017
79b005dc3d5fSteve Plimpton
patch 7Mar17 
Mar 7 2017
a2fa6ef4524csjplimp/GitHub
Merge pull request #393 from akohlmey/small-bugfixes 
Mar 7 2017
920641bbffbcsjplimp/GitHub
Merge pull request #399 from rbberger/docs_spelling_fixes 
Mar 7 2017
c2aabdec229csjplimp/GitHub
Merge pull request #398 from stanmoore1/kokkos_changes 
Mar 7 2017
e4aa735a6809sjplimp/GitHub
Merge pull request #395 from timattox/USER-DPD_bugfix 
Mar 7 2017
4af6557568e7sjplimp/GitHub
Merge pull request #394 from jaapkroe/kolmogorov-crespi 
Mar 7 2017
0798885bdb2asjplimp/GitHub
Merge pull request #389 from akohlmey/update-agni-potential 
Mar 7 2017
020e75e7efffsjplimp/GitHub
Merge pull request #386 from akohlmey/doc-consistentcy 
Mar 7 2017
d6866f1cfdd7sjplimp/GitHub
Merge pull request #376 from v0i0/airebo-bondorderLJ-fixes 
Mar 7 2017
efaa4c67109fSteve Plimpton
new neigh_modify exclude option, other SNAP changes 
Mar 7 2017
08baaa9d8edeRichard Berger
Fix more typos in tools 
Mar 7 2017
359af419a7abRichard Berger
Fix typo in python README 
Mar 7 2017
21be86c42393Richard Berger
Fix typos in txt2html 
Mar 7 2017
d6800405a518Richard Berger
Fix more typos in examples 
Mar 7 2017
3a054d1a82b2Richard Berger
Fix more typos in src files 
Mar 7 2017
007f3c66a033Richard Berger
Third batch of spelling fixes in manual 
Mar 7 2017
32708860a9faRichard Berger
Add remaining false positives 
Mar 7 2017
fc9eebb9367cRichard Berger
Added spellcheck utility to documentation build 
Mar 6 2017
dd76ac5010aeRichard Berger
Fix typos in tools folder 
Mar 6 2017
17486a9319f8Richard Berger
Convert USER/lb/polymer files to UNIX line endings and remove trailing… 
Mar 6 2017
778a79b8eef7Richard Berger
Fix typos in examples folder 
Mar 6 2017
7dd60f97377aRichard Berger
Fix typos in src files 
Mar 6 2017
084d831bce01Richard Berger
Second batch of spelling fixes in manual 
Mar 6 2017
e261bef7bba7Richard Berger
Spelling fixes in source files 
Mar 6 2017
fd78486086d9Richard Berger
First batch of spelling fixes in manual 
Mar 6 2017
6382d3c89a2fStan Moore
Improving memory access in comm_kokkos 
Mar 3 2017
763a00e8b02eTim Mattox
USER-DPD: pair_multi_lucy_rx bugfix for systems with multiple atom types 
Mar 3 2017
ce1a3f25e193Axel Kohlmeyer
Merge branch 'pair_write_fix' of https://github.com/andeplane/lammps into small… 
Mar 3 2017
eaf7ed770750Anders Hafreager
Print error if pair_write does not get correct number of arguments 
Mar 3 2017
9a560b90914cTim Mattox
USER-DPD bugfix: make atom_vec_dpd work properly with atom_vec_hybrid. We were… 
Mar 1 2017
8a0e44db83deJaap Kroes
updated documentation and ev_tally 
Mar 1 2017
1dc78a7e58c8Tim Mattox
USER-DPD: correct off-by-one errors in PairMultiLucyRX::coeff() 
Feb 28 2017
7a593c2fc886Tim Mattox
USER-DPD: correct off-by-one errors in PairTableRX::coeff() 
Feb 28 2017
3ac74a1d6995Axel Kohlmeyer
update lammps.book file for latest doc changes 
Feb 28 2017