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Merge remote-tracking branch 'akohlmey/integration' into library_interface_abort

Authored by Richard Berger <richard.berger@temple.edu> on Sep 17 2016, 00:46.

Description

Merge remote-tracking branch 'akohlmey/integration' into library_interface_abort

Event Timeline

Richard Berger <richard.berger@temple.edu> committed rLAMMPS8db7ef436481: Merge remote-tracking branch 'akohlmey/integration' into library_interface_abort (authored by Richard Berger <richard.berger@temple.edu>).Sep 17 2016, 00:46

Merged Changes

CommitAuthorDetailsCommitted
d17421eb7c2esjplimp/GitHub
Merge pull request #36 from akohlmey/small_bugfixes_and_cleanups 
Sep 16 2016
60dfdbc06302sjplimp/GitHub
Merge pull request #35 from akohlmey/lj_sf_dipole_sf_correction 
Sep 16 2016
e4bd63759b96sjplimp/GitHub
Merge pull request #34 from rbberger/make_py_fixes 
Sep 16 2016
ca558f6712fesjplimp/GitHub
Merge pull request #33 from rbberger/pylammps_additions 
Sep 16 2016
abf05eed6171Steve Plimpton
comm tiled bug fix 
Sep 16 2016
72ce8ff89f56sjplimp/GitHub
Merge pull request #31 from akohlmey/doc-cleanups-and-updates 
Sep 16 2016
9637a5b5306fAxel Kohlmeyer
colvars bugfix. updates colvars library to version 2016-09-14 
Sep 16 2016
4149413057ecAxel Kohlmeyer
reduce global name space pollution in pair style meam 
Sep 15 2016
400ef87c0537Axel Kohlmeyer
make certain, that -log() doesn't overflow and assign a suitable maximum number… 
Sep 15 2016
e9e9790d6e4aAxel Kohlmeyer
corrections for pair style lj/sf/dipole/sf and its /omp variant 
Sep 15 2016
319b1607525dRichard Berger
Add exceptions setting to help message of Make.py 
Sep 15 2016
cddc1dbb11fdRichard Berger
Added exceptions flag to Make.py 
Sep 15 2016
2831f50790ccAxel Kohlmeyer
Merge branch 'integration' into doc-cleanups-and-updates 
Sep 15 2016
62bf307d3cc6Richard Berger
Fix bug introduced into Make.py by latest changes 
Sep 15 2016
5cdc48dd0c24Richard Berger
Update ipython example to show interface usage 
Sep 14 2016
0ec8fa02e09eRichard Berger
Make thermo output accessable through PyLammps 
Sep 14 2016
6e3705f3809dRichard Berger
Allow writing input script from Python session 
Sep 14 2016
523c70e0bedcAxel Kohlmeyer
regenerate html files one more time 
Sep 14 2016
77e0a848774bAxel Kohlmeyer
fix an inconsistency and a typo 
Sep 14 2016
9779911cea34Axel Kohlmeyer
regenerate html files from scratch after merging from upstream and including… 
Sep 14 2016
1ad15b8711a4Axel Kohlmeyer
Merge branch 'integration' into doc-cleanups-and-updates 
Sep 14 2016
7025a3f5d179Axel Kohlmeyer/GitHub
Merge pull request #32 from rbberger/doc-cleanups-and-updates 
Sep 14 2016
df304f8ca196Richard Berger
Updated HTML after latest tool changes and corrections 
Sep 14 2016
3c88fa1436ffRichard Berger
Fix bug introduced in latest changes 
Sep 14 2016
b7ddc860c7f5Richard Berger
Fix error in Manual.txt 
Sep 14 2016
c61d5a1a2959Richard Berger
Raise exception and output error if ulb,ule and olb,ole are unbalanced 
Sep 14 2016
1dc19eceb2d7Richard Berger
Update unit tests to reflect new behavior 
Sep 14 2016
ae6b540d3ccaRichard Berger
Add indentation to multi-paragraph entries 
Sep 14 2016
300d1ef52e23Richard Berger
Remove references to former empty file 
Sep 13 2016
633840c87672Richard Berger
remove empty file 
Sep 13 2016
c44228b0ccecRichard Berger
Created more complete TOC and indices 
Sep 13 2016
90f6395ddc58Richard Berger
Filter out more header numbers 
Sep 13 2016
546582ea0251Richard Berger
Escape pipe characters 
Sep 13 2016
b76a42d3e0a6Axel Kohlmeyer
making a few more in-page links unique. some more small corrections and clenups 
Sep 13 2016
54d5a14fe3d6Axel Kohlmeyer
more doc formatting issues triggering errors/warnings in sphinx 
Sep 12 2016
f6efde373083Axel Kohlmeyer
some more smaller doc file cleanups. almost there... 
Sep 12 2016
4c399fc55339Axel Kohlmeyer
more typesetting corrections in docs indicated by sphinx warnings 
Sep 12 2016
328b7abeaa49Axel Kohlmeyer
correct various formatting issues flagged by sphinx 
Sep 12 2016
c3de3c142f95Axel Kohlmeyer
correct references to Howto subsections 
Sep 12 2016
80f94c7d0253Axel Kohlmeyer
avoid bad typesetting of include images 
Sep 12 2016
e11bfcf11706Axel Kohlmeyer
updates in "Getting Started" for running on Windows. 
Sep 12 2016
be1cf40f2be5Axel Kohlmeyer
update html files with recent changes 
Sep 12 2016
555a02786dddAxel Kohlmeyer
correct and improve typesetting for various sub-sub-subsections in "Getting… 
Sep 12 2016
cf6f504977cbAxel Kohlmeyer
update description of Windows support in "Getting started" Section 
Sep 12 2016
b698f389bc6fAxel Kohlmeyer
correct and improve links to PyMol and MATLAB 
Sep 12 2016
e96a8a46772cAxel Kohlmeyer
regenerate html pages with the updated content from the corrections 
Sep 11 2016
f8d5488409e3Axel Kohlmeyer
correct section link descriptions 
Sep 11 2016
4d298ccf2fffAxel Kohlmeyer
Give credit to Richard for being the lammps.org and senior jenkins wrangler 
Sep 11 2016
cb3044091ca7Axel Kohlmeyer
place ellipses in square brackets to avoid sphinx choking on them 
Sep 11 2016