Diffusion lammps 96259ea2d2bd

Added source code and documentation for USER-CGDNA
96259ea2d2bd
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Authored by Oliver Henrich <o.henrich@epcc.ed.ac.uk> on Jan 13 2017, 14:36.

Description

Added source code and documentation for USER-CGDNA

Details

Committed

Oliver Henrich <o.henrich@epcc.ed.ac.uk>

Jan 13 2017, 14:36

Pushed

junge

Oct 19 2017, 09:53

Parents

rLAMMPSc31f1e9f2252: add fix mscg command, example, lib

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Event Timeline

Oliver Henrich <o.henrich@epcc.ed.ac.uk> committed rLAMMPS96259ea2d2bd: Added source code and documentation for USER-CGDNA (authored by Oliver Henrich <o.henrich@epcc.ed.ac.uk>).Jan 13 2017, 14:36

Changes (44)

		Path
A		doc/src/Eqs/bond_oxdna_fene.tex
A		doc/src/PDF/USER-CGDNA-overview.pdf
M		doc/src/Section_packages.txt
A		doc/src/bond_oxdna_fene.txt
A		doc/src/fix_nve_dot.txt
A		doc/src/fix_nve_dotc_langevin.txt
M		doc/src/lammps.book
A		doc/src/pair_oxdna_excv.txt
A	(dir)	examples/USER/cgdna/
A		examples/USER/cgdna/README
A	(dir)	examples/USER/cgdna/examples/
A	(dir)	examples/USER/cgdna/examples/duplex1/
A		examples/USER/cgdna/examples/duplex1/data.duplex1
A		examples/USER/cgdna/examples/duplex1/input.duplex1
A		examples/USER/cgdna/examples/duplex1/log.duplex1_1p
A		examples/USER/cgdna/examples/duplex1/log.duplex1_8p
A	(dir)	examples/USER/cgdna/examples/duplex2/
A		examples/USER/cgdna/examples/duplex2/data.duplex2
A		examples/USER/cgdna/examples/duplex2/input.duplex2
A		examples/USER/cgdna/examples/duplex2/log.duplex2_1p
A		examples/USER/cgdna/examples/duplex2/log.duplex2_8p
A	(dir)	examples/USER/cgdna/util/
A		examples/USER/cgdna/util/generate_input.py
A		examples/USER/cgdna/util/input.ref
A		examples/USER/cgdna/util/sequence.txt
A	(dir)	src/USER-CGDNA/
A		src/USER-CGDNA/README
A		src/USER-CGDNA/bond_oxdna_fene.cpp
A		src/USER-CGDNA/bond_oxdna_fene.h
A		src/USER-CGDNA/fix_nve_dot.cpp
A		src/USER-CGDNA/fix_nve_dot.h
A		src/USER-CGDNA/fix_nve_dotc_langevin.cpp
A		src/USER-CGDNA/fix_nve_dotc_langevin.h
A		src/USER-CGDNA/mf_oxdna.h
A		src/USER-CGDNA/pair_oxdna_coaxstk.cpp
A		src/USER-CGDNA/pair_oxdna_coaxstk.h
A		src/USER-CGDNA/pair_oxdna_excv.cpp
A		src/USER-CGDNA/pair_oxdna_excv.h
A		src/USER-CGDNA/pair_oxdna_hbond.cpp
A		src/USER-CGDNA/pair_oxdna_hbond.h
A		src/USER-CGDNA/pair_oxdna_stk.cpp
A		src/USER-CGDNA/pair_oxdna_stk.h
A		src/USER-CGDNA/pair_oxdna_xstk.cpp
A		src/USER-CGDNA/pair_oxdna_xstk.h