Merge branch 'lammps-icms' into lammps-colvars
b01012c2dd8d
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Authored by Axel Kohlmeyer <akohlmey@gmail.com> on Apr 17 2013, 11:17.

Description

Merge branch 'lammps-icms' into lammps-colvars

Details

Committed

Axel Kohlmeyer <akohlmey@gmail.com>

Apr 17 2013, 11:17

Pushed

junge

Oct 6 2016, 16:49

Parents

rLAMMPS354de185b13a: update of colvars library to version 2013-01-30
rLAMMPS4bcaac41a067: Merge remote branch 'lammps-ro/master' into lammps-icms

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Axel Kohlmeyer <akohlmey@gmail.com> committed rLAMMPSb01012c2dd8d: Merge branch 'lammps-icms' into lammps-colvars (authored by Axel Kohlmeyer <akohlmey@gmail.com>).Apr 17 2013, 11:17

Merged Changes

This commit merges a very large number of changes. Only the first 50 are shown.

Commit	Author	Details	Committed
4bcaac41a067	Axel Kohlmeyer	Merge remote branch 'lammps-ro/master' into lammps-icms	Apr 17 2013
d376a8a83bfc	sjplimp	git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@9774 f3b2605a-c512-4ea7…	Apr 13 2013
4762e37a1606	sjplimp	git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@9773 f3b2605a-c512-4ea7…	Apr 13 2013
d8509b584220	sjplimp	git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@9772 f3b2605a-c512-4ea7…	Apr 13 2013
9af597de0151	Axel Kohlmeyer	Merge remote branch 'lammps-ro/master' into lammps-icms	Apr 12 2013
a741fcf859c2	pscrozi	git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@9771 f3b2605a-c512-4ea7…	Apr 12 2013
d2d9494a1c37	pscrozi	git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@9770 f3b2605a-c512-4ea7…	Apr 12 2013
328bb5aca122	sjplimp	git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@9769 f3b2605a-c512-4ea7…	Apr 11 2013
4d85c0c6705e	Axel Kohlmeyer	Merge remote branch 'lammps-ro/master' into lammps-icms	Apr 11 2013
6abcebe56c3d	Axel Kohlmeyer	Merge remote branch 'lammps-ro/master' into lammps-icms	Apr 11 2013
ec0725c8edb8	Axel Kohlmeyer	fix typo	Apr 11 2013
656d3f87cf35	sjplimp	git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@9768 f3b2605a-c512-4ea7…	Apr 10 2013
dcd49dac4f1c	pscrozi	git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@9767 f3b2605a-c512-4ea7…	Apr 9 2013
b210bf46cf94	Axel Kohlmeyer	Merge remote branch 'lammps-ro/master' into lammps-icms	Apr 9 2013
0e96b5fd0b26	sjplimp	git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@9766 f3b2605a-c512-4ea7…	Apr 9 2013
601ca515e6ac	sjplimp	git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@9765 f3b2605a-c512-4ea7…	Apr 9 2013
b6df7c873b33	sjplimp	git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@9764 f3b2605a-c512-4ea7…	Apr 9 2013
5563cb6124aa	sjplimp	git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@9763 f3b2605a-c512-4ea7…	Apr 9 2013
3fc7d1913de1	sjplimp	git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@9760 f3b2605a-c512-4ea7…	Apr 8 2013
81506fdb90dc	Axel Kohlmeyer	Merge remote branch 'lammps-ro/master' into lammps-icms	Apr 7 2013
c8346ac30378	sjplimp	git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@9758 f3b2605a-c512-4ea7…	Apr 7 2013
2f1909c5e840	sjplimp	git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@9757 f3b2605a-c512-4ea7…	Apr 7 2013
eb3276674903	sjplimp	git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@9756 f3b2605a-c512-4ea7…	Apr 7 2013
f5cd343be84d	sjplimp	git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@9755 f3b2605a-c512-4ea7…	Apr 7 2013
afac9a0f14a9	sjplimp	git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@9754 f3b2605a-c512-4ea7…	Apr 7 2013
612d3c09fa2b	Axel Kohlmeyer	Merge remote-tracking branch 'lammps-ro/master' into lammps-icms	Apr 6 2013
a60eacde839e	Axel Kohlmeyer	Merge branch 'lammps-icms' of git://git.icms.temple.edu/lammps-icms into lammps…	Apr 6 2013
022e3c1c57db	sjplimp	git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@9753 f3b2605a-c512-4ea7…	Apr 5 2013
6956b2e77aa0	Axel Kohlmeyer	Merge remote branch 'lammps-ro/master' into lammps-icms	Apr 5 2013
71bc1deaa9c0	Axel Kohlmeyer	Merge branch 'lammps-icms' of git://git.icms.temple.edu/lammps-icms into lammps…	Apr 5 2013
81a2ac57dc41	Axel Kohlmeyer	Merge remote branch 'lammps-ro/master' into lammps-icms	Apr 4 2013
0be82bdfa00a	sjplimp	git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@9752 f3b2605a-c512-4ea7…	Apr 4 2013
c87f3841400f	sjplimp	git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@9751 f3b2605a-c512-4ea7…	Apr 4 2013
8ddd160c3c33	sjplimp	git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@9748 f3b2605a-c512-4ea7…	Apr 3 2013
17acdd4096a8	sjplimp	git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@9746 f3b2605a-c512-4ea7…	Apr 3 2013
557f65ecc57b	sjplimp	git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@9745 f3b2605a-c512-4ea7…	Apr 3 2013
609226f8d0ea	sjplimp	git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@9743 f3b2605a-c512-4ea7…	Apr 3 2013
80507c361235	sjplimp	git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@9742 f3b2605a-c512-4ea7…	Apr 3 2013
984b4c962b28	sjplimp	git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@9741 f3b2605a-c512-4ea7…	Apr 3 2013
cbc01e5758b6	sjplimp	git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@9740 f3b2605a-c512-4ea7…	Apr 3 2013
59c7061e1ced	sjplimp	git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@9739 f3b2605a-c512-4ea7…	Apr 3 2013
2206f011e938	sjplimp	git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@9738 f3b2605a-c512-4ea7…	Apr 3 2013
da77d5e62a9d	sjplimp	git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@9737 f3b2605a-c512-4ea7…	Apr 3 2013
a15670bebd41	Axel Kohlmeyer	part 1 of the big makefile cleanup	Apr 3 2013
1543cc0d4633	Axel Kohlmeyer	Merge remote branch 'lammps-ro/master' into lammps-icms	Apr 3 2013
e4580f589635	sjplimp	git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@9734 f3b2605a-c512-4ea7…	Apr 2 2013
e28fd06b5a97	sjplimp	git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@9733 f3b2605a-c512-4ea7…	Apr 2 2013
a17cc3587d74	sjplimp	git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@9732 f3b2605a-c512-4ea7…	Apr 2 2013
82dcc03836cd	sjplimp	git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@9731 f3b2605a-c512-4ea7…	Apr 2 2013
e04595bc277a	sjplimp	git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@9729 f3b2605a-c512-4ea7…	Apr 2 2013

Changes (911)
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Very Large Commit

This commit is very large. Load each file individually.

		Path
A	(dir)	bench-accel/bench_dpd/
A		bench-accel/bench_dpd/data.dpd
A		bench-accel/bench_dpd/in.dpd
M		doc/Eqs/fix_wall_colloid.jpg
M		doc/Eqs/fix_wall_colloid.tex
M		doc/Manual.html
M		doc/Manual.pdf
M		doc/Manual.txt
M		doc/Section_accelerate.html
M		doc/Section_accelerate.txt
M		doc/Section_commands.html
M		doc/Section_commands.txt
M		doc/Section_errors.html
M		doc/Section_errors.txt
M		doc/Section_example.html
M		doc/Section_example.txt
M		doc/Section_howto.html
M		doc/Section_howto.txt
M		doc/Section_intro.html
M		doc/Section_intro.txt
M		doc/Section_python.html
M		doc/Section_python.txt
M		doc/Section_start.html
M		doc/Section_tools.html
M		doc/Section_tools.txt
M		doc/compute_stress_atom.html
M		doc/compute_stress_atom.txt
M		doc/compute_temp_asphere.html
M		doc/compute_temp_asphere.txt
M		doc/compute_ti.html
M		doc/compute_ti.txt
M		doc/compute_voronoi_atom.html
M		doc/compute_voronoi_atom.txt
M		doc/delete_bonds.html
M		doc/delete_bonds.txt
M		doc/dump.html
M		doc/dump.txt
M		doc/dump_modify.html
M		doc/dump_modify.txt
M		doc/fix_adapt.html
M		doc/fix_adapt.txt
M		doc/fix_gcmc.html
M		doc/fix_gcmc.txt
M		doc/fix_langevin.html
M		doc/fix_langevin.txt
M		doc/fix_nh.html
M		doc/fix_nh.txt
M		doc/fix_nph_asphere.html
M		doc/fix_nph_asphere.txt
M		doc/fix_nph_sphere.html
M		doc/fix_nph_sphere.txt
M		doc/fix_nphug.html
M		doc/fix_nphug.txt
M		doc/fix_npt_asphere.html
M		doc/fix_npt_asphere.txt
M		doc/fix_npt_sphere.html
M		doc/fix_npt_sphere.txt
M		doc/fix_nve.html
M		doc/fix_nve.txt
M		doc/fix_nvt_asphere.html
M		doc/fix_nvt_asphere.txt
M		doc/fix_nvt_sllod.html
M		doc/fix_nvt_sllod.txt
M		doc/fix_nvt_sphere.html
M		doc/fix_nvt_sphere.txt
A		doc/fix_phonon.html
A		doc/fix_phonon.txt
M		doc/fix_qeq_comb.html
M		doc/fix_qeq_comb.txt
M		doc/fix_reax_bonds.html
M		doc/fix_reax_bonds.txt
D		doc/fix_reaxc_bonds.html
D		doc/fix_reaxc_bonds.txt
M		doc/fix_rigid.html
M		doc/fix_rigid.txt
A		doc/fix_species.html
A		doc/fix_species.txt
M		doc/fix_spring.html
M		doc/fix_spring.txt
M		doc/fix_wall.html
M		doc/fix_wall.txt
M		doc/kspace_modify.html
M		doc/kspace_modify.txt
M		doc/kspace_style.html
M		doc/kspace_style.txt
M		doc/pair_buck_long.html
M		doc/pair_buck_long.txt
M		doc/pair_coeff.html
M		doc/pair_coeff.txt
M		doc/pair_dsmc.html
M		doc/pair_dsmc.txt
M		doc/pair_eff.txt
M		doc/pair_lj.html
M		doc/pair_lj.txt
M		doc/pair_lj_long.html
M		doc/pair_lj_long.txt
M		doc/pair_modify.html
M		doc/pair_modify.txt
M		doc/pair_reax_c.html
M		doc/pair_reax_c.txt
M		doc/pair_style.html
M		doc/pair_style.txt
M		doc/read_data.html
M		doc/read_data.txt
M		doc/read_dump.html
M		doc/read_restart.html
M		doc/read_restart.txt
M		doc/run_style.html
M		doc/run_style.txt
M		doc/units.txt
M		doc/variable.html
M		doc/variable.txt
A		doc/write_data.html
A		doc/write_data.txt
M		doc/write_restart.html
M		doc/write_restart.txt
M		examples/COUPLE/lammps_spparks/README
A	(dir)	examples/USER/phonon/
A	(dir)	examples/USER/phonon/1-1D-mono/
A		examples/USER/phonon/1-1D-mono/README
A		examples/USER/phonon/1-1D-mono/data.pos
A		examples/USER/phonon/1-1D-mono/disp.dat
A		examples/USER/phonon/1-1D-mono/in.Ana
A		examples/USER/phonon/1-1D-mono/in.disp
A		examples/USER/phonon/1-1D-mono/log.lammps.example
A		examples/USER/phonon/1-1D-mono/map.in
A		examples/USER/phonon/1-1D-mono/pdisp.eps
A		examples/USER/phonon/1-1D-mono/phonon.bin.2000000
A		examples/USER/phonon/1-1D-mono/phonon.log
A		examples/USER/phonon/1-1D-mono/plot.disp
A	(dir)	examples/USER/phonon/2-1D-diatomic/
A		examples/USER/phonon/2-1D-diatomic/README
A		examples/USER/phonon/2-1D-diatomic/data.pos
A		examples/USER/phonon/2-1D-diatomic/disp.dat
A		examples/USER/phonon/2-1D-diatomic/in.Ana
A		examples/USER/phonon/2-1D-diatomic/in.disp
A		examples/USER/phonon/2-1D-diatomic/log.lammps.example
A		examples/USER/phonon/2-1D-diatomic/map.in
A		examples/USER/phonon/2-1D-diatomic/pdisp.eps
A		examples/USER/phonon/2-1D-diatomic/pdos.dat
A		examples/USER/phonon/2-1D-diatomic/phonon.bin.2000000
A		examples/USER/phonon/2-1D-diatomic/phonon.log
A		examples/USER/phonon/2-1D-diatomic/plot.disp
A	(dir)	examples/USER/phonon/3-3D-FCC-Cu-EAM/
A		examples/USER/phonon/3-3D-FCC-Cu-EAM/CuPhonon.bin.6500000
A		examples/USER/phonon/3-3D-FCC-Cu-EAM/CuPhonon.log.example
A		examples/USER/phonon/3-3D-FCC-Cu-EAM/README
A		examples/USER/phonon/3-3D-FCC-Cu-EAM/cuu3.eam
A		examples/USER/phonon/3-3D-FCC-Cu-EAM/data.pos
A		examples/USER/phonon/3-3D-FCC-Cu-EAM/disp-expr.dat
A		examples/USER/phonon/3-3D-FCC-Cu-EAM/disp-ld.dat
A		examples/USER/phonon/3-3D-FCC-Cu-EAM/disp.dat
A		examples/USER/phonon/3-3D-FCC-Cu-EAM/dos-expr.dat
A		examples/USER/phonon/3-3D-FCC-Cu-EAM/dos-ld.dat
A		examples/USER/phonon/3-3D-FCC-Cu-EAM/dos.dat
A		examples/USER/phonon/3-3D-FCC-Cu-EAM/in.EAM3D
A		examples/USER/phonon/3-3D-FCC-Cu-EAM/in.disp
A		examples/USER/phonon/3-3D-FCC-Cu-EAM/in.dos
A		examples/USER/phonon/3-3D-FCC-Cu-EAM/log.lammps.example
A		examples/USER/phonon/3-3D-FCC-Cu-EAM/map.in
A		examples/USER/phonon/3-3D-FCC-Cu-EAM/pdisp.eps
A		examples/USER/phonon/3-3D-FCC-Cu-EAM/pdos.eps
A		examples/USER/phonon/3-3D-FCC-Cu-EAM/plot.disp
A		examples/USER/phonon/3-3D-FCC-Cu-EAM/plot.dos
A		examples/body/log.body.18Feb13.linux.1
A		examples/body/log.body.18Feb13.linux.4
D		examples/body/log.body.1Feb13.linux.1
D		examples/body/log.body.1Feb13.linux.4
A		examples/colloid/log.colloid.18Feb13.linux.1
A		examples/colloid/log.colloid.18Feb13.linux.4
D		examples/colloid/log.colloid.9Jan12.linux.1
D		examples/colloid/log.colloid.9Jan12.linux.4
M		examples/comb/in.comb.Si.elastic
A		examples/comb/log.comb.Cu.18Feb13.linux.1
A		examples/comb/log.comb.Cu.18Feb13.linux.4
D		examples/comb/log.comb.Cu.9Jan12.linux.1
D		examples/comb/log.comb.Cu.9Jan12.linux.4
A		examples/comb/log.comb.Cu2O.elastic.18Feb13.linux.1
A		examples/comb/log.comb.Cu2O.elastic.18Feb13.linux.4
D		examples/comb/log.comb.Cu2O.elastic.9Jan12.linux.1
D		examples/comb/log.comb.Cu2O.elastic.9Jan12.linux.4
D		examples/comb/log.comb.CuaS.9Jan12.linux.1
D		examples/comb/log.comb.CuaS.9Jan12.linux.4
A		examples/comb/log.comb.HfO2.18Feb13.linux.1
A		examples/comb/log.comb.HfO2.18Feb13.linux.4
D		examples/comb/log.comb.HfO2.9Jan12.linux.1
D		examples/comb/log.comb.HfO2.9Jan12.linux.4
A		examples/comb/log.comb.Si.18Feb13.linux.1
A		examples/comb/log.comb.Si.18Feb13.linux.4
D		examples/comb/log.comb.Si.9Jan12.linux.1
D		examples/comb/log.comb.Si.9Jan12.linux.4
A		examples/comb/log.comb.Si.elastic.18Feb13.linux.1
A		examples/comb/log.comb.Si.elastic.18Feb13.linux.4
D		examples/comb/log.comb.Si.elastic.9Jan12.linux.1
D		examples/comb/log.comb.Si.elastic.9Jan12.linux.4
A		examples/crack/log.crack.18Feb13.linux.1
A		examples/crack/log.crack.18Feb13.linux.4
D		examples/crack/log.crack.9Jan12.linux.1
D		examples/crack/log.crack.9Jan12.linux.4
A		examples/dipole/log.dipole.18Feb13.linux.1
A		examples/dipole/log.dipole.18Feb13.linux.4
D		examples/dipole/log.dipole.9Jan12.linux.1
D		examples/dipole/log.dipole.9Jan12.linux.4
A		examples/dreiding/log.dreiding.18Feb13.linux.1
A		examples/dreiding/log.dreiding.18Feb13.linux.4
D		examples/dreiding/log.dreiding.9Jan12.linux.1
D		examples/dreiding/log.dreiding.9Jan12.linux.4
A		examples/eim/log.eim.18Feb13.linux.1
A		examples/eim/log.eim.18Feb13.linux.4
D		examples/eim/log.eim.9Jan12.linux.1
D		examples/eim/log.eim.9Jan12.linux.4
A		examples/ellipse/log.ellipse.gayberne.18Feb13.linux.1
A		examples/ellipse/log.ellipse.gayberne.18Feb13.linux.4
D		examples/ellipse/log.ellipse.gayberne.9Jan12.linux.1
D		examples/ellipse/log.ellipse.gayberne.9Jan12.linux.4
A		examples/ellipse/log.ellipse.resquared.18Feb13.linux.1
A		examples/ellipse/log.ellipse.resquared.18Feb13.linux.4
D		examples/ellipse/log.ellipse.resquared.9Jan12.linux.1
D		examples/ellipse/log.ellipse.resquared.9Jan12.linux.4
A		examples/flow/log.flow.couette.18Feb13.linux.1
A		examples/flow/log.flow.couette.18Feb13.linux.4
D		examples/flow/log.flow.couette.9Jan12.linux.1
D		examples/flow/log.flow.couette.9Jan12.linux.4
A		examples/flow/log.flow.pois.18Feb13.linux.1
A		examples/flow/log.flow.pois.18Feb13.linux.4
D		examples/flow/log.flow.pois.9Jan12.linux.1
D		examples/flow/log.flow.pois.9Jan12.linux.4
A		examples/friction/log.friction.18Feb13.linux.1
A		examples/friction/log.friction.18Feb13.linux.4
D		examples/friction/log.friction.9Jan12.linux.1
D		examples/friction/log.friction.9Jan12.linux.4
A		examples/gpu/log.gpu.melt.2.5.18Feb13.linux.1
A		examples/gpu/log.gpu.melt.2.5.18Feb13.linux.4
D		examples/gpu/log.gpu.melt.2.5.9Jan12.linux.1
D		examples/gpu/log.gpu.melt.2.5.9Jan12.linux.4
A		examples/gpu/log.gpu.melt.5.0.18Feb13.linux.1
A		examples/gpu/log.gpu.melt.5.0.18Feb13.linux.4
D		examples/gpu/log.gpu.melt.5.0.9Jan12.linux.1
D		examples/gpu/log.gpu.melt.5.0.9Jan12.linux.4
A		examples/gpu/log.gpu.phosphate.18Feb13.linux.1
A		examples/gpu/log.gpu.phosphate.18Feb13.linux.4
D		examples/gpu/log.gpu.phosphate.9Jan12.linux.1
D		examples/gpu/log.gpu.phosphate.9Jan12.linux.4
A		examples/gpu/log.gpu.rhodo.18Feb13.linux.1
A		examples/gpu/log.gpu.rhodo.18Feb13.linux.4
D		examples/gpu/log.gpu.rhodo.9Jan12.linux.1
D		examples/gpu/log.gpu.rhodo.9Jan12.linux.4
A		examples/hugoniostat/log.hugoniostat.18Feb13.linux.1
A		examples/hugoniostat/log.hugoniostat.18Feb13.linux.4
D		examples/hugoniostat/log.hugoniostat.9Jan12.linux.1
D		examples/hugoniostat/log.hugoniostat.9Jan12.linux.4
A		examples/indent/log.indent.18Feb13.linux.1
A		examples/indent/log.indent.18Feb13.linux.4
D		examples/indent/log.indent.9Jan12.linux.1
D		examples/indent/log.indent.9Jan12.linux.4
A		examples/indent/log.indent.min.18Feb13.linux.1
A		examples/indent/log.indent.min.18Feb13.linux.4
D		examples/indent/log.indent.min.9Jan12.linux.1
D		examples/indent/log.indent.min.9Jan12.linux.4
D		examples/kim/log.kim.lj.12Jul12.mac_mpi.1
D		examples/kim/log.kim.lj.12Jul12.mac_mpi.4
D		examples/kim/log.kim.lj.lmp.12Jul12.mac_mpi.1
D		examples/kim/log.kim.lj.lmp.12Jul12.mac_mpi.4
A		examples/meam/log.meam.18Feb13.linux.1
A		examples/meam/log.meam.18Feb13.linux.4
D		examples/meam/log.meam.9Jan12.linux.1
D		examples/meam/log.meam.9Jan12.linux.4
A		examples/meam/log.meam.shear.18Feb13.linux.1
A		examples/meam/log.meam.shear.18Feb13.linux.4
D		examples/meam/log.meam.shear.9Jan12.linux.1
D		examples/meam/log.meam.shear.9Jan12.linux.4
A		examples/melt/log.melt.18Feb13.linux.1
A		examples/melt/log.melt.18Feb13.linux.4
D		examples/melt/log.melt.9Jan12.linux.1
D		examples/melt/log.melt.9Jan12.linux.4
A		examples/micelle/log.micelle.18Feb13.linux.1
A		examples/micelle/log.micelle.18Feb13.linux.4
D		examples/micelle/log.micelle.9Jan12.linux.1
D		examples/micelle/log.micelle.9Jan12.linux.4
A		examples/min/log.min.18Feb13.linux.1
A		examples/min/log.min.18Feb13.linux.4
D		examples/min/log.min.9Jan12.linux.1
D		examples/min/log.min.9Jan12.linux.4
A		examples/min/log.min.box.18Feb13.linux.1
A		examples/min/log.min.box.18Feb13.linux.4
D		examples/min/log.min.box.9Jan12.linux.1
D		examples/min/log.min.box.9Jan12.linux.4
A		examples/msst/log.msst.18Feb13.linux.1
A		examples/msst/log.msst.18Feb13.linux.4
D		examples/msst/log.msst.9Jan12.linux.1
D		examples/msst/log.msst.9Jan12.linux.4
A		examples/neb/log.neb.hop1.18Feb13.linux.4
D		examples/neb/log.neb.hop1.9Jan12.linux.4
A		examples/neb/log.neb.hop2.18Feb13.linux.4
D		examples/neb/log.neb.hop2.9Jan12.linux.4
A		examples/nemd/log.nemd.18Feb13.linux.1
A		examples/nemd/log.nemd.18Feb13.linux.4
D		examples/nemd/log.nemd.9Jan12.linux.1
D		examples/nemd/log.nemd.9Jan12.linux.4
A		examples/obstacle/log.obstacle.18Feb13.linux.1
A		examples/obstacle/log.obstacle.18Feb13.linux.4
D		examples/obstacle/log.obstacle.9Jan12.linux.1
D		examples/obstacle/log.obstacle.9Jan12.linux.4
A		examples/peptide/log.peptide.18Feb13.linux.1
A		examples/peptide/log.peptide.18Feb13.linux.4
D		examples/peptide/log.peptide.9Jan12.linux.1
D		examples/peptide/log.peptide.9Jan12.linux.4
A		examples/peri/log.peri.18Feb13.linux.1
A		examples/peri/log.peri.18Feb13.linux.4
D		examples/peri/log.peri.9Jan12.linux.1
D		examples/peri/log.peri.9Jan12.linux.4
A		examples/pour/log.pour.18Feb13.linux.1
A		examples/pour/log.pour.18Feb13.linux.4
A		examples/pour/log.pour.2d.18Feb13.linux.1
A		examples/pour/log.pour.2d.18Feb13.linux.4
D		examples/pour/log.pour.2d.9Jan12.linux.1
D		examples/pour/log.pour.2d.9Jan12.linux.4
D		examples/pour/log.pour.9Jan12.linux.1
D		examples/pour/log.pour.9Jan12.linux.4
A		examples/prd/log.prd.0.18Feb13.linux.4
D		examples/prd/log.prd.0.9Jan12.linux.4
A		examples/prd/log.prd.1.18Feb13.linux.4
D		examples/prd/log.prd.1.9Jan12.linux.4
A		examples/prd/log.prd.18Feb13.linux.4
A		examples/prd/log.prd.2.18Feb13.linux.4
D		examples/prd/log.prd.2.9Jan12.linux.4
A		examples/prd/log.prd.3.18Feb13.linux.4
D		examples/prd/log.prd.3.9Jan12.linux.4
D		examples/prd/log.prd.9Jan12.linux.4
M		examples/reax/AB/in.AB
M		examples/reax/Au_O/in.AuO
M		examples/reax/CHO/in.CHO
M		examples/reax/Fe_O_H/in.FeOH3
M		examples/reax/RDX/in.RDX
M		examples/reax/V_O_H/in.VOH
M		examples/reax/Zn_O_H/in.ZnOH2
M		examples/reax/in.reaxc.rdx
M		examples/reax/in.reaxc.tatb
A		examples/reax/log.reax.rdx.18Feb13.linux.1
A		examples/reax/log.reax.rdx.18Feb13.linux.4
D		examples/reax/log.reax.rdx.9Jan12.linux.1
D		examples/reax/log.reax.rdx.9Jan12.linux.4
A		examples/reax/log.reax.tatb.18Feb13.linux.1
A		examples/reax/log.reax.tatb.18Feb13.linux.4
D		examples/reax/log.reax.tatb.9Jan12.linux.1
D		examples/reax/log.reax.tatb.9Jan12.linux.4
A		examples/reax/log.reaxc.rdx.18Feb13.linux.1
A		examples/reax/log.reaxc.rdx.18Feb13.linux.4
D		examples/reax/log.reaxc.rdx.9Jan12.linux.1
D		examples/reax/log.reaxc.rdx.9Jan12.linux.4
A		examples/reax/log.reaxc.tatb.18Feb13.linux.1
A		examples/reax/log.reaxc.tatb.18Feb13.linux.4
D		examples/reax/log.reaxc.tatb.9Jan12.linux.1
D		examples/reax/log.reaxc.tatb.9Jan12.linux.4
A		examples/rigid/log.rigid.18Feb13.linux.1
A		examples/rigid/log.rigid.18Feb13.linux.4
D		examples/rigid/log.rigid.9Jan12.linux.1
D		examples/rigid/log.rigid.9Jan12.linux.4
A		examples/rigid/log.rigid.poems.18Feb13.linux.1
A		examples/rigid/log.rigid.poems.18Feb13.linux.4
D		examples/rigid/log.rigid.poems.9Jan12.linux.1
D		examples/rigid/log.rigid.poems.9Jan12.linux.4
A		examples/rigid/log.rigid.poems2.18Feb13.linux.1
A		examples/rigid/log.rigid.poems2.18Feb13.linux.4
D		examples/rigid/log.rigid.poems2.9Jan12.linux.1
D		examples/rigid/log.rigid.poems2.9Jan12.linux.4
D		examples/rigid/log.rigid.tnr.9Jan12.linux.1
D		examples/rigid/log.rigid.tnr.9Jan12.linux.4
A		examples/shear/log.shear.18Feb13.linux.1
A		examples/shear/log.shear.18Feb13.linux.4
D		examples/shear/log.shear.9Jan12.linux.1
D		examples/shear/log.shear.9Jan12.linux.4
A		examples/shear/log.shear.void.18Feb13.linux.1
A		examples/shear/log.shear.void.18Feb13.linux.4
D		examples/shear/log.shear.void.9Jan12.linux.1
D		examples/shear/log.shear.void.9Jan12.linux.4
M		examples/srd/in.srd.pure
A		examples/srd/log.srd.mixture.18Feb13.linux.1
A		examples/srd/log.srd.mixture.18Feb13.linux.4
D		examples/srd/log.srd.mixture.9Jan12.linux.1
D		examples/srd/log.srd.mixture.9Jan12.linux.4
A		examples/srd/log.srd.pure.18Feb13.linux.1
A		examples/srd/log.srd.pure.18Feb13.linux.4
D		examples/srd/log.srd.pure.9Jan12.linux.1
D		examples/srd/log.srd.pure.9Jan12.linux.4
A		examples/tad/log.tad.0.18Feb13.linux.3
D		examples/tad/log.tad.0.9Jan12.linux.3
A		examples/tad/log.tad.1.18Feb13.linux.3
D		examples/tad/log.tad.1.9Jan12.linux.3
A		examples/tad/log.tad.18Feb13.linux.3
A		examples/tad/log.tad.2.18Feb13.linux.3
D		examples/tad/log.tad.2.9Jan12.linux.3
D		examples/tad/log.tad.9Jan12.linux.3
A		examples/tad/log.tad.neb.18Feb13.linux.3
D		examples/tad/log.tad.neb.9Jan12.linux.3
M		lammps.book
A		potentials/BNC.tersoff
M		python/README
M		python/lammps.py
M		src/.gitignore
M		src/ASPHERE/compute_temp_asphere.cpp
M		src/ASPHERE/compute_temp_asphere.h
M		src/ASPHERE/fix_nve_asphere_noforce.h
M		src/ASPHERE/pair_gayberne.h
M		src/ASPHERE/pair_line_lj.h
M		src/ASPHERE/pair_resquared.h
M		src/ASPHERE/pair_tri_lj.h
M		src/BODY/body_nparticle.cpp
M		src/BODY/body_nparticle.h
M		src/BODY/compute_body_local.h
M		src/BODY/fix_nve_body.h
M		src/BODY/pair_body.h
M		src/CLASS2/angle_class2.cpp
M		src/CLASS2/angle_class2.h
M		src/CLASS2/bond_class2.cpp
M		src/CLASS2/bond_class2.h
M		src/CLASS2/pair_lj_class2_coul_long.h
M		src/COLLOID/pair_colloid.h
M		src/DIPOLE/atom_vec_dipole.cpp
M		src/DIPOLE/atom_vec_dipole.h
M		src/FLD/pair_brownian.h
M		src/FLD/pair_brownian_poly.cpp
M		src/FLD/pair_brownian_poly.h
M		src/FLD/pair_lubricate.h
M		src/FLD/pair_lubricateU.h
M		src/FLD/pair_lubricateU_poly.h
M		src/FLD/pair_lubricate_poly.h
M		src/GPU/Install.sh
M		src/GPU/Package.sh
D		src/GPU/fix_report_balance.cpp
D		src/GPU/fix_report_balance.h
M		src/GPU/pair_born_coul_long_gpu.cpp
M		src/GPU/pair_born_coul_long_gpu.h
M		src/GPU/pair_born_coul_wolf_gpu.cpp
M		src/GPU/pair_born_coul_wolf_gpu.h
M		src/GPU/pair_born_gpu.cpp
M		src/GPU/pair_born_gpu.h
M		src/GPU/pair_colloid_gpu.h
M		src/GPU/pair_dipole_cut_gpu.h
M		src/GPU/pair_gauss_gpu.cpp
M		src/GPU/pair_yukawa_colloid_gpu.h
M		src/GPU/pppm_gpu.h
M		src/KIM/pair_kim.cpp
M		src/KIM/pair_kim.h
M		src/KSPACE/commgrid.cpp
M		src/KSPACE/commgrid.h
M		src/KSPACE/ewald.h
M		src/KSPACE/ewald_disp.cpp
M		src/KSPACE/ewald_disp.h
M		src/KSPACE/msm.cpp
M		src/KSPACE/msm.h
M		src/KSPACE/msm_cg.cpp
M		src/KSPACE/msm_cg.h
M		src/KSPACE/pair_born_coul_long.h
M		src/KSPACE/pair_buck_coul_long.cpp
M		src/KSPACE/pair_buck_coul_long.h
M		src/KSPACE/pair_buck_long_coul_long.cpp
M		src/KSPACE/pair_buck_long_coul_long.h
M		src/KSPACE/pair_coul_long.h
M		src/KSPACE/pair_lj_charmm_coul_long.h
M		src/KSPACE/pair_lj_cut_coul_long.h
M		src/KSPACE/pair_lj_cut_tip4p_long.cpp
M		src/KSPACE/pair_lj_cut_tip4p_long.h
M		src/KSPACE/pair_lj_long_coul_long.cpp
M		src/KSPACE/pair_lj_long_coul_long.h
M		src/KSPACE/pair_lj_long_tip4p_long.cpp
M		src/KSPACE/pair_lj_long_tip4p_long.h
M		src/KSPACE/pppm.cpp
M		src/KSPACE/pppm.h
M		src/KSPACE/pppm_disp.cpp
M		src/KSPACE/pppm_disp.h
M		src/KSPACE/pppm_disp_tip4p.cpp
M		src/KSPACE/pppm_disp_tip4p.h
M		src/KSPACE/pppm_old.h
D		src/MAKE/Makefile.abe
M		src/MAKE/Makefile.altix
M		src/MAKE/Makefile.bgl
M		src/MAKE/Makefile.cygwin
D		src/MAKE/Makefile.delta
D		src/MAKE/Makefile.delta-intel
D		src/MAKE/Makefile.delta-omp
D		src/MAKE/Makefile.delta-openmp
D		src/MAKE/Makefile.delta-single
D		src/MAKE/Makefile.delta-single-omp
M		src/MAKE/Makefile.encanto
M		src/MAKE/Makefile.fermi
M		src/MAKE/Makefile.fink
M		src/MAKE/Makefile.g++
M		src/MAKE/Makefile.g++3
M		src/MAKE/Makefile.glory
D		src/MAKE/Makefile.jaguar
D		src/MAKE/Makefile.jaguar-single
D		src/MAKE/Makefile.jaguar-single-omp
D		src/MAKE/Makefile.jaguarpf
D		src/MAKE/Makefile.jaguarpf-acml
D		src/MAKE/Makefile.jaguarpf-omp
D		src/MAKE/Makefile.kraken
M		src/MAKE/Makefile.lam
D		src/MAKE/Makefile.lincoln
M		src/MAKE/Makefile.linux
D		src/MAKE/Makefile.longhorn
M		src/MAKE/Makefile.mac
M		src/MAKE/Makefile.mac_mpi
M		src/MAKE/Makefile.mingw
M		src/MAKE/Makefile.mingw32-cross
M		src/MAKE/Makefile.mingw32-cross-serial
M		src/MAKE/Makefile.mkl
M		src/MAKE/Makefile.odin
M		src/MAKE/Makefile.openmpi
D		src/MAKE/Makefile.openmpi-cuda
M		src/MAKE/Makefile.openmpi-fftw3
M		src/MAKE/Makefile.openmpi-fftw3f
M		src/MAKE/Makefile.openmpi-icc
M		src/MAKE/Makefile.openmpi-intel
M		src/MAKE/Makefile.openmpi-kissfft
M		src/MAKE/Makefile.openmpi-mkl
M		src/MAKE/Makefile.openmpi-omp
M		src/MAKE/Makefile.openmpi-omp-intel
D		src/MAKE/Makefile.openmpi-omp-profile
D		src/MAKE/Makefile.openmpi-profile
M		src/MAKE/Makefile.openmpi-single
M		src/MAKE/Makefile.pgi
M		src/MAKE/Makefile.power5
M		src/MAKE/Makefile.qed
D		src/MAKE/Makefile.ranger
M		src/MAKE/Makefile.redsky
M		src/MAKE/Makefile.sdsc
M		src/MAKE/Makefile.seaborg
M		src/MAKE/Makefile.serial
A		src/MAKE/Makefile.serial-clang
M		src/MAKE/Makefile.serial-omp
M		src/MAKE/Makefile.serial-opt
M		src/MAKE/Makefile.serial_debug
M		src/MAKE/Makefile.sgi
D		src/MAKE/Makefile.shampoo
M		src/MAKE/Makefile.solaris
M		src/MAKE/Makefile.spirit
M		src/MAKE/Makefile.storm
M		src/MAKE/Makefile.tacc
M		src/MAKE/Makefile.tbird
M		src/MAKE/Makefile.tesla
M		src/MAKE/Makefile.tunnison
M		src/MAKE/Makefile.xe6
M		src/MAKE/Makefile.xt3
M		src/MAKE/Makefile.xt5
M		src/MANYBODY/fix_qeq_comb.cpp
M		src/MANYBODY/fix_qeq_comb.h
M		src/MC/fix_bond_break.cpp
M		src/MC/fix_bond_create.cpp
M		src/MC/fix_gcmc.cpp
M		src/MC/fix_gcmc.h
M		src/MC/pair_dsmc.cpp
M		src/MOLECULE/Install.sh
M		src/MOLECULE/angle_charmm.cpp
M		src/MOLECULE/angle_charmm.h
M		src/MOLECULE/angle_cosine.cpp
M		src/MOLECULE/angle_cosine.h
M		src/MOLECULE/angle_cosine_periodic.cpp
M		src/MOLECULE/angle_cosine_periodic.h
M		src/MOLECULE/angle_cosine_squared.cpp
M		src/MOLECULE/angle_cosine_squared.h
M		src/MOLECULE/angle_harmonic.cpp
M		src/MOLECULE/angle_harmonic.h
D		src/MOLECULE/angle_hybrid.cpp
D		src/MOLECULE/angle_hybrid.h
M		src/MOLECULE/angle_table.cpp
M		src/MOLECULE/atom_vec_angle.cpp
M		src/MOLECULE/atom_vec_angle.h
M		src/MOLECULE/atom_vec_bond.cpp
M		src/MOLECULE/atom_vec_bond.h
M		src/MOLECULE/atom_vec_full.cpp
M		src/MOLECULE/atom_vec_full.h
M		src/MOLECULE/atom_vec_molecular.cpp
M		src/MOLECULE/atom_vec_molecular.h
M		src/MOLECULE/bond_fene.cpp
M		src/MOLECULE/bond_fene.h
M		src/MOLECULE/bond_fene_expand.cpp
M		src/MOLECULE/bond_fene_expand.h
M		src/MOLECULE/bond_harmonic.cpp
M		src/MOLECULE/bond_harmonic.h
M		src/MOLECULE/bond_morse.cpp
M		src/MOLECULE/bond_morse.h
M		src/MOLECULE/bond_nonlinear.cpp
M		src/MOLECULE/bond_nonlinear.h
M		src/MOLECULE/bond_quartic.cpp
M		src/MOLECULE/bond_quartic.h
M		src/MOLECULE/bond_table.cpp
M		src/MOLECULE/dihedral_harmonic.cpp
M		src/MOLECULE/dihedral_harmonic.h
V		src/{MOLECULE → }/dihedral_hybrid.cpp
D		src/MOLECULE/dihedral_hybrid.h
M		src/MOLECULE/improper_harmonic.cpp
M		src/MOLECULE/improper_harmonic.h
V		src/{MOLECULE → }/improper_hybrid.cpp
D		src/MOLECULE/improper_hybrid.h
A		src/MOLECULE/pair_lj_cut_tip4p_cut.cpp
A		src/MOLECULE/pair_lj_cut_tip4p_cut.h
M		src/Make.sh
M		src/Makefile
M		src/Makefile.shlib
M		src/OPT/Install.sh
A		src/OPT/pair_lj_long_coul_long_opt.cpp
A		src/OPT/pair_lj_long_coul_long_opt.h
M		src/PERI/atom_vec_peri.cpp
M		src/PERI/atom_vec_peri.h
M		src/REAX/pair_reax.cpp
M		src/REPLICA/tad.cpp
M		src/REPLICA/tad.h
M		src/RIGID/Install.sh
M		src/RIGID/fix_rigid.cpp
M		src/RIGID/fix_rigid.h
M		src/RIGID/fix_rigid_nh.cpp
M		src/RIGID/fix_rigid_nh.h
M		src/RIGID/fix_rigid_nph.cpp
M		src/RIGID/fix_rigid_nph.h
M		src/RIGID/fix_rigid_npt.cpp
M		src/RIGID/fix_rigid_npt.h
M		src/RIGID/fix_rigid_nvt.cpp
M		src/RIGID/fix_rigid_nvt.h
A		src/RIGID/fix_rigid_small.cpp
A		src/RIGID/fix_rigid_small.h
M		src/SHOCK/fix_append_atoms.cpp
M		src/SHOCK/fix_append_atoms.h
M		src/STUBS/mpi.h
M		src/USER-AWPMD/atom_vec_wavepacket.cpp
M		src/USER-AWPMD/atom_vec_wavepacket.h
M		src/USER-CG-CMM/angle_sdk.cpp
M		src/USER-CG-CMM/angle_sdk.h
M		src/USER-CUDA/atom_vec_angle_cuda.cpp
M		src/USER-CUDA/atom_vec_atomic_cuda.cpp
M		src/USER-CUDA/atom_vec_charge_cuda.cpp
M		src/USER-CUDA/atom_vec_full_cuda.cpp
M		src/USER-CUDA/atom_vec_full_cuda.h
M		src/USER-CUDA/compute_temp_cuda.cpp
M		src/USER-CUDA/compute_temp_cuda.h
M		src/USER-CUDA/compute_temp_partial_cuda.cpp
M		src/USER-CUDA/compute_temp_partial_cuda.h
M		src/USER-EFF/atom_vec_electron.cpp
M		src/USER-EFF/atom_vec_electron.h
M		src/USER-EFF/compute_temp_eff.cpp
M		src/USER-EFF/compute_temp_eff.h
M		src/USER-EFF/compute_temp_region_eff.cpp
M		src/USER-EFF/compute_temp_region_eff.h
M		src/USER-MISC/angle_cosine_shift.cpp
M		src/USER-MISC/angle_cosine_shift.h
M		src/USER-MISC/angle_cosine_shift_exp.cpp
M		src/USER-MISC/angle_cosine_shift_exp.h
M		src/USER-MISC/angle_dipole.cpp
M		src/USER-MISC/angle_dipole.h
M		src/USER-MISC/angle_fourier.cpp
M		src/USER-MISC/angle_fourier.h
M		src/USER-MISC/angle_fourier_simple.cpp
M		src/USER-MISC/angle_fourier_simple.h
M		src/USER-MISC/angle_quartic.cpp
M		src/USER-MISC/angle_quartic.h
M		src/USER-MISC/compute_temp_rotate.cpp
M		src/USER-MISC/compute_temp_rotate.h
M		src/USER-OMP/angle_charmm_omp.cpp
M		src/USER-OMP/angle_class2_omp.cpp
M		src/USER-OMP/angle_cosine_delta_omp.cpp
M		src/USER-OMP/angle_cosine_omp.cpp
M		src/USER-OMP/angle_cosine_periodic_omp.cpp
M		src/USER-OMP/angle_cosine_shift_exp_omp.cpp
M		src/USER-OMP/angle_cosine_shift_omp.cpp
M		src/USER-OMP/angle_cosine_squared_omp.cpp
M		src/USER-OMP/angle_dipole_omp.cpp
M		src/USER-OMP/angle_fourier_omp.cpp
M		src/USER-OMP/angle_fourier_simple_omp.cpp
M		src/USER-OMP/angle_harmonic_omp.cpp
M		src/USER-OMP/angle_quartic_omp.cpp
M		src/USER-OMP/angle_sdk_omp.cpp
M		src/USER-OMP/angle_table_omp.cpp
M		src/USER-OMP/bond_class2_omp.cpp
M		src/USER-OMP/bond_fene_expand_omp.cpp
M		src/USER-OMP/bond_fene_omp.cpp
M		src/USER-OMP/bond_harmonic_omp.cpp
M		src/USER-OMP/bond_harmonic_shift_cut_omp.cpp
M		src/USER-OMP/bond_harmonic_shift_omp.cpp
M		src/USER-OMP/bond_morse_omp.cpp
M		src/USER-OMP/bond_nonlinear_omp.cpp
M		src/USER-OMP/bond_quartic_omp.cpp
M		src/USER-OMP/bond_table_omp.cpp
M		src/USER-OMP/dihedral_charmm_omp.cpp
M		src/USER-OMP/dihedral_class2_omp.cpp
M		src/USER-OMP/dihedral_cosine_shift_exp_omp.cpp
M		src/USER-OMP/dihedral_fourier_omp.cpp
M		src/USER-OMP/dihedral_harmonic_omp.cpp
M		src/USER-OMP/dihedral_helix_omp.cpp
M		src/USER-OMP/dihedral_multi_harmonic_omp.cpp
M		src/USER-OMP/dihedral_nharmonic_omp.cpp
M		src/USER-OMP/dihedral_opls_omp.cpp
M		src/USER-OMP/dihedral_quadratic_omp.cpp
M		src/USER-OMP/dihedral_table_omp.cpp
M		src/USER-OMP/fix_omp.cpp
M		src/USER-OMP/fix_omp.h
A		src/USER-OMP/fix_rigid_small_omp.cpp
A		src/USER-OMP/fix_rigid_small_omp.h
M		src/USER-OMP/improper_class2_omp.cpp
M		src/USER-OMP/improper_cossq_omp.cpp
M		src/USER-OMP/improper_cvff_omp.cpp
M		src/USER-OMP/improper_fourier_omp.cpp
M		src/USER-OMP/improper_harmonic_omp.cpp
M		src/USER-OMP/improper_ring_omp.cpp
M		src/USER-OMP/improper_umbrella_omp.cpp
M		src/USER-OMP/msm_cg_omp.cpp
M		src/USER-OMP/msm_omp.cpp
M		src/USER-OMP/msm_omp.h
M		src/USER-OMP/neigh_respa_omp.cpp
M		src/USER-OMP/neighbor_omp.h
M		src/USER-OMP/pair_buck_long_coul_long_omp.cpp
M		src/USER-OMP/pair_buck_long_coul_long_omp.h
A		src/USER-OMP/pair_lj_cut_tip4p_cut_omp.cpp
A		src/USER-OMP/pair_lj_cut_tip4p_cut_omp.h
M		src/USER-OMP/pair_lj_cut_tip4p_long_omp.cpp
M		src/USER-OMP/pair_lj_long_coul_long_omp.cpp
M		src/USER-OMP/pair_lj_long_coul_long_omp.h
A		src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp
A		src/USER-OMP/pair_lj_long_tip4p_long_omp.h
M		src/USER-OMP/pppm_cg_omp.cpp
A		src/USER-OMP/pppm_disp_omp.cpp
A		src/USER-OMP/pppm_disp_omp.h
A		src/USER-OMP/pppm_disp_tip4p_omp.cpp
A		src/USER-OMP/pppm_disp_tip4p_omp.h
M		src/USER-OMP/pppm_omp.cpp
M		src/USER-OMP/pppm_tip4p_omp.cpp
A		src/USER-OMP/respa_omp.cpp
A		src/USER-OMP/respa_omp.h
M		src/USER-OMP/thr_data.cpp
M		src/USER-OMP/thr_data.h
M		src/USER-OMP/thr_omp.cpp
M		src/USER-OMP/thr_omp.h
A	(dir)	src/USER-PHONON/
A		src/USER-PHONON/Install.sh
A		src/USER-PHONON/README
A		src/USER-PHONON/fix_phonon.cpp
A		src/USER-PHONON/fix_phonon.h
M		src/USER-REAXC/Install.sh
A		src/USER-REAXC/compute_spec_atom.cpp
A		src/USER-REAXC/compute_spec_atom.h
M		src/USER-REAXC/fix_reaxc_bonds.cpp
M		src/USER-REAXC/fix_reaxc_bonds.h
A		src/USER-REAXC/fix_species.cpp
A		src/USER-REAXC/fix_species.h
M		src/USER-REAXC/pair_reax_c.cpp
M		src/USER-REAXC/pair_reax_c.h
M		src/USER-REAXC/reaxc_defs.h
M		src/USER-REAXC/reaxc_ffield.cpp
M		src/USER-REAXC/reaxc_types.h
M		src/USER-SPH/atom_vec_meso.cpp
M		src/USER-SPH/atom_vec_meso.h
M		src/VORONOI/compute_voronoi_atom.cpp
M		src/VORONOI/compute_voronoi_atom.h
M		src/angle.cpp
M		src/angle.h
A		src/angle_hybrid.cpp
A		src/angle_hybrid.h
M		src/atom.cpp
M		src/atom.h
M		src/atom_vec.cpp
M		src/atom_vec.h
M		src/atom_vec_atomic.cpp
M		src/atom_vec_atomic.h
M		src/atom_vec_body.cpp
M		src/atom_vec_body.h
M		src/atom_vec_charge.cpp
M		src/atom_vec_charge.h
M		src/atom_vec_ellipsoid.cpp
M		src/atom_vec_ellipsoid.h
M		src/atom_vec_hybrid.cpp
M		src/atom_vec_hybrid.h
M		src/atom_vec_line.cpp
M		src/atom_vec_line.h
M		src/atom_vec_sphere.cpp
M		src/atom_vec_sphere.h
M		src/atom_vec_tri.cpp
M		src/atom_vec_tri.h
M		src/body.h
M		src/bond.cpp
M		src/bond.h
M		src/bond_hybrid.cpp
M		src/bond_hybrid.h
M		src/comm.cpp
M		src/comm.h
M		src/compute.h
M		src/compute_centro_atom.h
M		src/compute_contact_atom.h
M		src/compute_displace_atom.cpp
M		src/compute_displace_atom.h
M		src/compute_erotate_sphere_atom.h
M		src/compute_inertia_molecule.h
M		src/compute_msd.cpp
M		src/compute_msd.h
M		src/compute_temp.cpp
M		src/compute_temp.h
M		src/compute_temp_com.cpp
M		src/compute_temp_com.h
M		src/compute_temp_deform.cpp
M		src/compute_temp_deform.h
M		src/compute_temp_partial.cpp
M		src/compute_temp_partial.h
M		src/compute_temp_profile.cpp
M		src/compute_temp_profile.h
M		src/compute_temp_ramp.cpp
M		src/compute_temp_ramp.h
M		src/compute_temp_region.cpp
M		src/compute_temp_region.h
M		src/compute_temp_sphere.cpp
M		src/compute_temp_sphere.h
M		src/compute_ti.cpp
M		src/create_atoms.cpp
M		src/delete_bonds.cpp
M		src/dihedral.cpp
M		src/dihedral.h
V		src/{ ← MOLECULE}/dihedral_hybrid.cpp
A		src/dihedral_hybrid.h
M		src/displace_atoms.h
M		src/domain.h
M		src/dump.cpp
M		src/dump.h
M		src/dump_atom.cpp
M		src/dump_cfg.cpp
M		src/dump_custom.cpp
M		src/dump_custom.h
M		src/dump_dcd.cpp
M		src/fix.cpp
M		src/fix.h
M		src/fix_adapt.h
M		src/fix_ave_histo.cpp
M		src/fix_balance.h
M		src/fix_box_relax.h
M		src/fix_external.cpp
M		src/fix_heat.cpp
M		src/fix_heat.h
M		src/fix_langevin.h
M		src/fix_move.h
M		src/fix_nh.cpp
M		src/fix_nh.h
M		src/fix_respa.h
M		src/fix_shake.cpp
M		src/fix_shake.h
A		src/fix_store.cpp
A		src/fix_store.h
M		src/fix_store_state.cpp
M		src/fix_wall.cpp
M		src/fix_wall.h
M		src/group.h
M		src/improper.cpp
M		src/improper.h
V		src/{ ← MOLECULE}/improper_hybrid.cpp
A		src/improper_hybrid.h
M		src/input.cpp
M		src/input.h
M		src/kspace.cpp
M		src/kspace.h
M		src/lammps.cpp
M		src/lammps.h
M		src/library.h
M		src/modify.cpp
A		src/my_pool_chunk.h
M		src/neigh_bond.h
M		src/neighbor.cpp
M		src/neighbor.h
M		src/pair.cpp
M		src/pair.h
M		src/pair_coul_dsf.h
M		src/pair_dpd_tstat.cpp
A		src/pair_list.cpp
A		src/pair_list.h
M		src/pair_lj_cut.cpp
M		src/pair_lj_cut.h
M		src/pair_lj_cut_coul_cut.cpp
M		src/pair_lj_cut_coul_dsf.h
M		src/read_data.cpp
M		src/read_data.h
M		src/read_dump.cpp
M		src/read_dump.h
M		src/region_cylinder.h
M		src/region_sphere.h
M		src/rerun.h
M		src/respa.cpp
M		src/respa.h
M		src/special.cpp
M		src/special.h
M		src/thermo.h
M		src/variable.cpp
M		src/variable.h
M		src/velocity.cpp
M		src/verlet.cpp
M		src/version.h
A		src/write_data.cpp
A		src/write_data.h
M		tools/README
D		tools/ch2lmp/example/1ac7_trj.psf
A	(dir)	tools/phonon/
A		tools/phonon/Makefile
A		tools/phonon/README
A		tools/phonon/dynmat.cpp
A		tools/phonon/dynmat.h
A		tools/phonon/green.cpp
A		tools/phonon/green.h
A		tools/phonon/interpolate.cpp
A		tools/phonon/interpolate.h
A		tools/phonon/main.cpp
A		tools/phonon/memory.cpp
A		tools/phonon/memory.h
A		tools/phonon/phonon.cpp
A		tools/phonon/phonon.h
A		tools/phonon/timer.cpp
A		tools/phonon/timer.h
A		tools/phonon/version.h
M		tools/restart2data.cpp