lammps-ro
b7fa2a27b34d
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Authored by Mike Brown <wb8@lens-login1.ccs.ornl.gov> on Mar 30 2011, 04:26.

Description

Merge branch 'master' of http://git.icms.temple.edu/lammps-ro

Conflicts:
doc/Section_errors.txt

Details

Committed

Mike Brown <wb8@lens-login1.ccs.ornl.gov>

Mar 30 2011, 04:26

Pushed

junge

Oct 6 2016, 16:49

Parents

rLAMMPS1da30d97456a: Missing files from last commit
rLAMMPS1eb3bade2119: git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@5867 f3b2605a-c512-4ea7…

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Mike Brown <wb8@lens-login1.ccs.ornl.gov> committed rLAMMPSb7fa2a27b34d: Merge branch 'master' of http://git.icms.temple.edu/lammps-ro (authored by Mike Brown <wb8@lens-login1.ccs.ornl.gov>).Mar 30 2011, 04:26

Merged Changes

This commit merges a very large number of changes. Only the first 50 are shown.

Commit	Author	Details	Committed
1eb3bade2119	sjplimp	git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@5867 f3b2605a-c512-4ea7…	Mar 28 2011
543f7bc483a5	athomps	Added checks for natoms=0	Mar 28 2011
570990175480	sjplimp	git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@5865 f3b2605a-c512-4ea7…	Mar 28 2011
8aec110fb828	sjplimp	git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@5864 f3b2605a-c512-4ea7…	Mar 28 2011
73378fab4b23	sjplimp	git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@5862 f3b2605a-c512-4ea7…	Mar 28 2011
999b5404677f	sjplimp	git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@5861 f3b2605a-c512-4ea7…	Mar 28 2011
72fbf1b5f529	sjplimp	git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@5860 f3b2605a-c512-4ea7…	Mar 28 2011
8cb984523706	sjplimp	git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@5859 f3b2605a-c512-4ea7…	Mar 28 2011
56f53d83ccec	athomps	Added zerosum option	Mar 28 2011
fae9ea3b7914	athomps	Added the option zero yes/no	Mar 28 2011
7036f170323b	sjplimp	git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@5854 f3b2605a-c512-4ea7…	Mar 27 2011
0fe876a19982	sjplimp	git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@5853 f3b2605a-c512-4ea7…	Mar 27 2011
a290cc687463	sjplimp	git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@5852 f3b2605a-c512-4ea7…	Mar 27 2011
06737e36b0d0	sjplimp	git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@5851 f3b2605a-c512-4ea7…	Mar 26 2011
d8fe7a91f045	sjplimp	git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@5850 f3b2605a-c512-4ea7…	Mar 26 2011
2b21f284c0ab	sjplimp	git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@5849 f3b2605a-c512-4ea7…	Mar 26 2011
4442884a5285	sjplimp	git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@5848 f3b2605a-c512-4ea7…	Mar 26 2011
1ea450163799	sjplimp	git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@5847 f3b2605a-c512-4ea7…	Mar 26 2011
161a6cb78898	sjplimp	git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@5846 f3b2605a-c512-4ea7…	Mar 26 2011
1202c2a2bed6	sjplimp	git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@5845 f3b2605a-c512-4ea7…	Mar 26 2011
521dfd2ed6bf	sjplimp	git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@5844 f3b2605a-c512-4ea7…	Mar 26 2011
6111b9e8cbea	sjplimp	git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@5843 f3b2605a-c512-4ea7…	Mar 26 2011
a1978f660a7d	sjplimp	git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@5842 f3b2605a-c512-4ea7…	Mar 26 2011
803fd6a64e78	sjplimp	git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@5841 f3b2605a-c512-4ea7…	Mar 26 2011
6348954fa296	sjplimp	git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@5837 f3b2605a-c512-4ea7…	Mar 26 2011
1f2a7add7806	sjplimp	git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@5836 f3b2605a-c512-4ea7…	Mar 26 2011
fbb475b9cd1a	sjplimp	git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@5835 f3b2605a-c512-4ea7…	Mar 25 2011
e3cf0183114b	sjplimp	git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@5834 f3b2605a-c512-4ea7…	Mar 25 2011
50b8413fe720	sjplimp	git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@5833 f3b2605a-c512-4ea7…	Mar 25 2011
1511c8b10bbd	sjplimp	git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@5832 f3b2605a-c512-4ea7…	Mar 25 2011
31e62fe9fe2e	sjplimp	git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@5830 f3b2605a-c512-4ea7…	Mar 25 2011
631d5da654e5	sjplimp	git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@5829 f3b2605a-c512-4ea7…	Mar 25 2011
9c3ccc14d139	sjplimp	git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@5828 f3b2605a-c512-4ea7…	Mar 25 2011
05ebd9cf523b	sjplimp	git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@5827 f3b2605a-c512-4ea7…	Mar 25 2011
a48de813ed53	sjplimp	git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@5823 f3b2605a-c512-4ea7…	Mar 24 2011
8fac13e152e7	sjplimp	git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@5822 f3b2605a-c512-4ea7…	Mar 24 2011
423e6c0f702d	sjplimp	git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@5820 f3b2605a-c512-4ea7…	Mar 23 2011
2d34232ced1f	sjplimp	git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@5818 f3b2605a-c512-4ea7…	Mar 23 2011
b10f00788ec0	sjplimp	git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@5817 f3b2605a-c512-4ea7…	Mar 23 2011
77a301aea774	sjplimp	git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@5814 f3b2605a-c512-4ea7…	Mar 23 2011
e88366b01df9	sjplimp	git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@5813 f3b2605a-c512-4ea7…	Mar 23 2011
6023ea7ff679	sjplimp	git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@5812 f3b2605a-c512-4ea7…	Mar 23 2011
72289a2606de	sjplimp	git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@5811 f3b2605a-c512-4ea7…	Mar 23 2011
2ed6a60aced9	sjplimp	git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@5809 f3b2605a-c512-4ea7…	Mar 22 2011
ee5cf537331f	sjplimp	git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@5808 f3b2605a-c512-4ea7…	Mar 22 2011
0869b6dc12fa	athomps	Tweaked comments	Mar 21 2011
72659777e95d	athomps	Added stuff to handle error messages in log files	Mar 21 2011
5137794d5a4c	athomps	Added reax to README	Mar 21 2011
5e200777de38	sjplimp	git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@5804 f3b2605a-c512-4ea7…	Mar 21 2011
41900e5e1c00	sjplimp	git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@5801 f3b2605a-c512-4ea7…	Mar 18 2011

Changes (706)
Show All Changes

Very Large Commit

This commit is very large. Load each file individually.

		Path
V		bench/{log.10Sep10.chain.fixed.linux.1 → log.28Mar11.chain.fixed.linux.1}
V		bench/{log.10Sep10.chain.fixed.linux.4 → log.28Mar11.chain.fixed.linux.4}
V		bench/{log.10Sep10.chain.scaled.linux.4 → log.28Mar11.chain.scaled.linux.4}
V		bench/{log.10Sep10.chute.fixed.linux.1 → log.28Mar11.chute.fixed.linux.1}
V		bench/{log.10Sep10.chute.fixed.linux.4 → log.28Mar11.chute.fixed.linux.4}
V		bench/{log.10Sep10.chute.scaled.linux.4 → log.28Mar11.chute.scaled.linux.4}
V		bench/{log.10Sep10.eam.fixed.linux.1 → log.28Mar11.eam.fixed.linux.1}
V		bench/{log.10Sep10.eam.fixed.linux.4 → log.28Mar11.eam.fixed.linux.4}
V		bench/{log.10Sep10.eam.scaled.linux.4 → log.28Mar11.eam.scaled.linux.4}
V		bench/{log.10Sep10.lj.fixed.linux.1 → log.28Mar11.lj.fixed.linux.1}
V		bench/{log.10Sep10.lj.fixed.linux.4 → log.28Mar11.lj.fixed.linux.4}
V		bench/{log.10Sep10.lj.scaled.linux.4 → log.28Mar11.lj.scaled.linux.4}
V		bench/{log.10Sep10.rhodo.fixed.linux.1 → log.28Mar11.rhodo.fixed.linux.1}
V		bench/{log.10Sep10.rhodo.fixed.linux.4 → log.28Mar11.rhodo.fixed.linux.4}
V		bench/{log.10Sep10.rhodo.scaled.linux.4 → log.28Mar11.rhodo.scaled.linux.4}
V		bench/{log.28Mar11.chain.fixed.linux.1 ← log.10Sep10.chain.fixed.linux.1}
V		bench/{log.28Mar11.chain.fixed.linux.4 ← log.10Sep10.chain.fixed.linux.4}
V		bench/{log.28Mar11.chain.scaled.linux.4 ← log.10Sep10.chain.scaled.linux.4}
V		bench/{log.28Mar11.chute.fixed.linux.1 ← log.10Sep10.chute.fixed.linux.1}
V		bench/{log.28Mar11.chute.fixed.linux.4 ← log.10Sep10.chute.fixed.linux.4}
V		bench/{log.28Mar11.chute.scaled.linux.4 ← log.10Sep10.chute.scaled.linux.4}
V		bench/{log.28Mar11.eam.fixed.linux.1 ← log.10Sep10.eam.fixed.linux.1}
V		bench/{log.28Mar11.eam.fixed.linux.4 ← log.10Sep10.eam.fixed.linux.4}
V		bench/{log.28Mar11.eam.scaled.linux.4 ← log.10Sep10.eam.scaled.linux.4}
V		bench/{log.28Mar11.lj.fixed.linux.1 ← log.10Sep10.lj.fixed.linux.1}
V		bench/{log.28Mar11.lj.fixed.linux.4 ← log.10Sep10.lj.fixed.linux.4}
V		bench/{log.28Mar11.lj.scaled.linux.4 ← log.10Sep10.lj.scaled.linux.4}
V		bench/{log.28Mar11.rhodo.fixed.linux.1 ← log.10Sep10.rhodo.fixed.linux.1}
V		bench/{log.28Mar11.rhodo.fixed.linux.4 ← log.10Sep10.rhodo.fixed.linux.4}
V		bench/{log.28Mar11.rhodo.scaled.linux.4 ← log.10Sep10.rhodo.scaled.linux.4}
M		doc/Section_commands.html
M		doc/Section_commands.txt
M		doc/Section_errors.html
M		doc/Section_errors.txt
M		doc/communicate.html
M		doc/communicate.txt
M		doc/compute.html
M		doc/compute.txt
P		doc/compute_cluster_atom.html Copied from doc/compute_coord_atom.html
A		doc/compute_cluster_atom.txt
P		doc/compute_coord_atom.html Copied to doc/compute_cluster_atom.html
M		doc/compute_coord_atom.txt
M		doc/dump.html
M		doc/dump.txt
M		doc/dump_modify.html
M		doc/dump_modify.txt
M		doc/fix_ave_histo.html
M		doc/fix_ave_histo.txt
M		doc/fix_box_relax.html
M		doc/fix_box_relax.txt
M		doc/fix_langevin.html
M		doc/fix_langevin.txt
M		doc/fix_qeq_comb.html
M		doc/fix_qeq_comb.txt
M		doc/fix_qeq_reax.html
M		doc/fix_qeq_reax.txt
M		doc/if.html
M		doc/if.txt
M		doc/pair_coeff.html
M		doc/pair_coeff.txt
M		doc/pair_eff.html
M		doc/pair_eff.txt
M		doc/pair_meam.html
M		doc/pair_meam.txt
M		doc/read_data.html
M		doc/read_data.txt
M		examples/ELASTIC/displace.mod
M		examples/ELASTIC/in.elastic
A		examples/USER/eff/CH4/in.ch4.min
A	(dir)	examples/USER/eff/ECP/
A		examples/USER/eff/ECP/README
A	(dir)	examples/USER/eff/ECP/Si2H6/
A		examples/USER/eff/ECP/Si2H6/data.Si2H6
A		examples/USER/eff/ECP/Si2H6/data.Si2H6.ang
A		examples/USER/eff/ECP/Si2H6/in.Si2H6
A		examples/USER/eff/ECP/Si2H6/in.Si2H6.ang
A	(dir)	examples/USER/eff/ECP/SiH4/
A		examples/USER/eff/ECP/SiH4/data.SiH4
A		examples/USER/eff/ECP/SiH4/data.SiH4.ang
A		examples/USER/eff/ECP/SiH4/in.SiH4
A		examples/USER/eff/ECP/SiH4/in.SiH4.ang
V		examples/USER/eff/H/{data.h_atom → data.h_atom.bohr}
A		examples/USER/eff/H/data.h_atom.ang
V		examples/USER/eff/H/{data.h_atom.bohr ← data.h_atom}
D		examples/USER/eff/H/in.h_atom.min
D		examples/USER/eff/H/in.h_atom.spe
A		examples/USER/eff/H/in.h_atom.spe.ang
A		examples/USER/eff/H/in.h_atom.spe.bohr
M		examples/USER/eff/H_plasma/data.h2bulk
A		examples/USER/eff/H_plasma/data.h2bulk.ang
A		examples/USER/eff/H_plasma/in.h2bulk.nve.ang
V		examples/USER/eff/Li-solid/{data.Li → data.Li.bohr}
A		examples/USER/eff/Li-solid/data.Li.ang
V		examples/USER/eff/Li-solid/{data.Li.bohr ← data.Li}
D		examples/USER/eff/Li-solid/in.Li
A		examples/USER/eff/Li-solid/in.Li.ang
A		examples/USER/eff/Li-solid/in.Li.bohr
A	(dir)	examples/USER/eff/fixed-core/
A	(dir)	examples/USER/eff/fixed-core/C2H6/
A		examples/USER/eff/fixed-core/C2H6/data.C2H6fc.ang
A		examples/USER/eff/fixed-core/C2H6/data.C2H6fc.bohr
A		examples/USER/eff/fixed-core/C2H6/in.C2H6fc.ang
A		examples/USER/eff/fixed-core/C2H6/in.C2H6fc.bohr
A	(dir)	examples/USER/eff/fixed-core/CH4/
A		examples/USER/eff/fixed-core/CH4/data.CH4fc.ang
A		examples/USER/eff/fixed-core/CH4/data.CH4fc.bohr
A		examples/USER/eff/fixed-core/CH4/in.CH4fc.ang
A		examples/USER/eff/fixed-core/CH4/in.CH4fc.bohr
A		examples/USER/eff/fixed-core/CH4/in.CH4fc.spe.ang
A		examples/USER/eff/fixed-core/CH4/in.CH4fc.spe.bohr
A		examples/USER/eff/fixed-core/README
D		examples/colloid/log.colloid.10Sep10.linux.1
D		examples/colloid/log.colloid.10Sep10.linux.4
A		examples/colloid/log.colloid.28Mar11.linux.1
A		examples/colloid/log.colloid.28Mar11.linux.4
V		examples/comb/{log.comb.Cu.10Sep10.linux.1 → log.comb.Cu.28Mar11.linux.1}
V		examples/comb/{log.comb.Cu.10Sep10.linux.4 → log.comb.Cu.28Mar11.linux.4}
V		examples/comb/{log.comb.Cu.28Mar11.linux.1 ← log.comb.Cu.10Sep10.linux.1}
V		examples/comb/{log.comb.Cu.28Mar11.linux.4 ← log.comb.Cu.10Sep10.linux.4}
D		examples/comb/log.comb.Cu2O.elastic.10Sep10.linux.1
D		examples/comb/log.comb.Cu2O.elastic.10Sep10.linux.4
A		examples/comb/log.comb.Cu2O.elastic.28Mar11.linux.1
A		examples/comb/log.comb.Cu2O.elastic.28Mar11.linux.4
V		examples/comb/{log.comb.Si.10Sep10.linux.1 → log.comb.Si.28Mar11.linux.1}
V		examples/comb/{log.comb.Si.10Sep10.linux.4 → log.comb.Si.28Mar11.linux.4}
V		examples/comb/{log.comb.Si.28Mar11.linux.1 ← log.comb.Si.10Sep10.linux.1}
V		examples/comb/{log.comb.Si.28Mar11.linux.4 ← log.comb.Si.10Sep10.linux.4}
D		examples/comb/log.comb.Si.elastic.10Sep10.linux.1
D		examples/comb/log.comb.Si.elastic.10Sep10.linux.4
A		examples/comb/log.comb.Si.elastic.28Mar11.linux.1
A		examples/comb/log.comb.Si.elastic.28Mar11.linux.4
V		examples/crack/{log.crack.10Sep10.linux.1 → log.crack.28Mar11.linux.1}
V		examples/crack/{log.crack.10Sep10.linux.4 → log.crack.28Mar11.linux.4}
V		examples/crack/{log.crack.28Mar11.linux.1 ← log.crack.10Sep10.linux.1}
V		examples/crack/{log.crack.28Mar11.linux.4 ← log.crack.10Sep10.linux.4}
V		examples/dipole/{log.dipole.10Sep10.linux.1 → log.dipole.28Mar11.linux.1}
V		examples/dipole/{log.dipole.10Sep10.linux.4 → log.dipole.28Mar11.linux.4}
V		examples/dipole/{log.dipole.28Mar11.linux.1 ← log.dipole.10Sep10.linux.1}
V		examples/dipole/{log.dipole.28Mar11.linux.4 ← log.dipole.10Sep10.linux.4}
V		examples/eim/{log.eim.10Sep10.linux.1 → log.eim.28Mar11.linux.1}
V		examples/eim/{log.eim.10Sep10.linux.4 → log.eim.28Mar11.linux.4}
V		examples/eim/{log.eim.28Mar11.linux.1 ← log.eim.10Sep10.linux.1}
V		examples/eim/{log.eim.28Mar11.linux.4 ← log.eim.10Sep10.linux.4}
V		examples/ellipse/{log.ellipse.gayberne.10Sep10.linux.1 → log.ellipse.gayberne.28Mar11.linux.1}
V		examples/ellipse/{log.ellipse.gayberne.10Sep10.linux.4 → log.ellipse.gayberne.28Mar11.linux.4}
V		examples/ellipse/{log.ellipse.gayberne.28Mar11.linux.1 ← log.ellipse.gayberne.10Sep10.linux.1}
V		examples/ellipse/{log.ellipse.gayberne.28Mar11.linux.4 ← log.ellipse.gayberne.10Sep10.linux.4}
V		examples/ellipse/{log.ellipse.resquared.10Sep10.linux.1 → log.ellipse.resquared.28Mar11.linux.1}
V		examples/ellipse/{log.ellipse.resquared.10Sep10.linux.4 → log.ellipse.resquared.28Mar11.linux.4}
V		examples/ellipse/{log.ellipse.resquared.28Mar11.linux.1 ← log.ellipse.resquared.10Sep10.linux.1}
V		examples/ellipse/{log.ellipse.resquared.28Mar11.linux.4 ← log.ellipse.resquared.10Sep10.linux.4}
V		examples/flow/{log.flow.couette.10Sep10.linux.1 → log.flow.couette.28Mar11.linux.1}
V		examples/flow/{log.flow.couette.10Sep10.linux.4 → log.flow.couette.28Mar11.linux.4}
V		examples/flow/{log.flow.couette.28Mar11.linux.1 ← log.flow.couette.10Sep10.linux.1}
V		examples/flow/{log.flow.couette.28Mar11.linux.4 ← log.flow.couette.10Sep10.linux.4}
V		examples/flow/{log.flow.pois.10Sep10.linux.1 → log.flow.pois.28Mar11.linux.1}
V		examples/flow/{log.flow.pois.10Sep10.linux.4 → log.flow.pois.28Mar11.linux.4}
V		examples/flow/{log.flow.pois.28Mar11.linux.1 ← log.flow.pois.10Sep10.linux.1}
V		examples/flow/{log.flow.pois.28Mar11.linux.4 ← log.flow.pois.10Sep10.linux.4}
V		examples/friction/{log.friction.10Sep10.linux.1 → log.friction.28Mar11.linux.1}
V		examples/friction/{log.friction.10Sep10.linux.4 → log.friction.28Mar11.linux.4}
V		examples/friction/{log.friction.28Mar11.linux.1 ← log.friction.10Sep10.linux.1}
V		examples/friction/{log.friction.28Mar11.linux.4 ← log.friction.10Sep10.linux.4}
V		examples/indent/{log.indent.10Sep10.linux.1 → log.indent.28Mar11.linux.1}
V		examples/indent/{log.indent.10Sep10.linux.4 → log.indent.28Mar11.linux.4}
V		examples/indent/{log.indent.28Mar11.linux.1 ← log.indent.10Sep10.linux.1}
V		examples/indent/{log.indent.28Mar11.linux.4 ← log.indent.10Sep10.linux.4}
V		examples/indent/{log.indent.min.10Sep10.linux.1 → log.indent.min.28Mar11.linux.1}
V		examples/indent/{log.indent.min.10Sep10.linux.4 → log.indent.min.28Mar11.linux.4}
V		examples/indent/{log.indent.min.28Mar11.linux.1 ← log.indent.min.10Sep10.linux.1}
V		examples/indent/{log.indent.min.28Mar11.linux.4 ← log.indent.min.10Sep10.linux.4}
D		examples/meam/log.meam.10Sep10.linux.1
D		examples/meam/log.meam.10Sep10.linux.4
A		examples/meam/log.meam.28Mar11.linux.1
A		examples/meam/log.meam.28Mar11.linux.4
V		examples/meam/{log.meam.shear.10Sep10.linux.1 → log.meam.shear.28Mar11.linux.1}
V		examples/meam/{log.meam.shear.10Sep10.linux.4 → log.meam.shear.28Mar11.linux.4}
V		examples/meam/{log.meam.shear.28Mar11.linux.1 ← log.meam.shear.10Sep10.linux.1}
V		examples/meam/{log.meam.shear.28Mar11.linux.4 ← log.meam.shear.10Sep10.linux.4}
V		examples/melt/{log.melt.10Sep10.linux.1 → log.melt.28Mar11.linux.1}
V		examples/melt/{log.melt.10Sep10.linux.4 → log.melt.28Mar11.linux.4}
V		examples/melt/{log.melt.28Mar11.linux.1 ← log.melt.10Sep10.linux.1}
V		examples/melt/{log.melt.28Mar11.linux.4 ← log.melt.10Sep10.linux.4}
V		examples/micelle/{log.micelle.10Sep10.linux.1 → log.micelle.28Mar11.linux.1}
V		examples/micelle/{log.micelle.10Sep10.linux.4 → log.micelle.28Mar11.linux.4}
V		examples/micelle/{log.micelle.28Mar11.linux.1 ← log.micelle.10Sep10.linux.1}
V		examples/micelle/{log.micelle.28Mar11.linux.4 ← log.micelle.10Sep10.linux.4}
V		examples/min/{log.min.10Sep10.linux.1 → log.min.28Mar11.linux.1}
V		examples/min/{log.min.10Sep10.linux.4 → log.min.28Mar11.linux.4}
V		examples/min/{log.min.28Mar11.linux.1 ← log.min.10Sep10.linux.1}
V		examples/min/{log.min.28Mar11.linux.4 ← log.min.10Sep10.linux.4}
V		examples/msst/{log.msst.10Sep10.linux.1 → log.msst.28Mar11.linux.1}
V		examples/msst/{log.msst.10Sep10.linux.4 → log.msst.28Mar11.linux.4}
V		examples/msst/{log.msst.28Mar11.linux.1 ← log.msst.10Sep10.linux.1}
V		examples/msst/{log.msst.28Mar11.linux.4 ← log.msst.10Sep10.linux.4}
D		examples/neb/log.neb.hop1.10Sep10.linux.4
A		examples/neb/log.neb.hop1.28Mar11.linux.4
D		examples/neb/log.neb.hop2.10Sep10.linux.4
A		examples/neb/log.neb.hop2.28Mar11.linux.4
D		examples/nemd/log.nemd.10Sep10.linux.1
D		examples/nemd/log.nemd.10Sep10.linux.4
A		examples/nemd/log.nemd.28Mar11.linux.1
A		examples/nemd/log.nemd.28Mar11.linux.4
V		examples/obstacle/{log.obstacle.10Sep10.linux.1 → log.obstacle.28Mar11.linux.1}
V		examples/obstacle/{log.obstacle.10Sep10.linux.4 → log.obstacle.28Mar11.linux.4}
V		examples/obstacle/{log.obstacle.28Mar11.linux.1 ← log.obstacle.10Sep10.linux.1}
V		examples/obstacle/{log.obstacle.28Mar11.linux.4 ← log.obstacle.10Sep10.linux.4}
V		examples/peptide/{log.peptide.10Sep10.linux.1 → log.peptide.28Mar11.linux.1}
V		examples/peptide/{log.peptide.10Sep10.linux.4 → log.peptide.28Mar11.linux.4}
V		examples/peptide/{log.peptide.28Mar11.linux.1 ← log.peptide.10Sep10.linux.1}
V		examples/peptide/{log.peptide.28Mar11.linux.4 ← log.peptide.10Sep10.linux.4}
V		examples/peri/{log.peri.10Sep10.linux.1 → log.peri.28Mar11.linux.1}
V		examples/peri/{log.peri.10Sep10.linux.4 → log.peri.28Mar11.linux.4}
V		examples/peri/{log.peri.28Mar11.linux.1 ← log.peri.10Sep10.linux.1}
V		examples/peri/{log.peri.28Mar11.linux.4 ← log.peri.10Sep10.linux.4}
V		examples/pour/{log.pour.10Sep10.linux.1 → log.pour.28Mar11.linux.1}
V		examples/pour/{log.pour.10Sep10.linux.4 → log.pour.28Mar11.linux.4}
V		examples/pour/{log.pour.28Mar11.linux.1 ← log.pour.10Sep10.linux.1}
V		examples/pour/{log.pour.28Mar11.linux.4 ← log.pour.10Sep10.linux.4}
V		examples/pour/{log.pour.2d.10Sep10.linux.1 → log.pour.2d.28Mar11.linux.1}
V		examples/pour/{log.pour.2d.10Sep10.linux.4 → log.pour.2d.28Mar11.linux.4}
V		examples/pour/{log.pour.2d.28Mar11.linux.1 ← log.pour.2d.10Sep10.linux.1}
V		examples/pour/{log.pour.2d.28Mar11.linux.4 ← log.pour.2d.10Sep10.linux.4}
V		examples/prd/{log.prd.0.10Sep10.linux.4 → log.prd.0.28Mar11.linux.4}
V		examples/prd/{log.prd.0.28Mar11.linux.4 ← log.prd.0.10Sep10.linux.4}
V		examples/prd/{log.prd.1.10Sep10.linux.4 → log.prd.1.28Mar11.linux.4}
V		examples/prd/{log.prd.1.28Mar11.linux.4 ← log.prd.1.10Sep10.linux.4}
D		examples/prd/log.prd.10Sep10.linux.4
V		examples/prd/{log.prd.2.10Sep10.linux.4 → log.prd.2.28Mar11.linux.4}
V		examples/prd/{log.prd.2.28Mar11.linux.4 ← log.prd.2.10Sep10.linux.4}
A		examples/prd/log.prd.28Mar11.linux.4
V		examples/prd/{log.prd.3.10Sep10.linux.4 → log.prd.3.28Mar11.linux.4}
V		examples/prd/{log.prd.3.28Mar11.linux.4 ← log.prd.3.10Sep10.linux.4}
A		examples/reax/AB/README
D		examples/reax/AB/dump.reax.ab
A		examples/reax/Au_O/README
D		examples/reax/Au_O/dump.reax.auo
A		examples/reax/CHO/README
D		examples/reax/CHO/dump.reax.cho
A		examples/reax/Fe_O_H/README
D		examples/reax/Fe_O_H/dump.reax.feoh
A		examples/reax/RDX/README
D		examples/reax/RDX/dump.reax.rdx
M		examples/reax/README
A		examples/reax/V_O_H/README
D		examples/reax/V_O_H/dump.reax.voh
A		examples/reax/Zn_O_H/README
D		examples/reax/Zn_O_H/dump.reax.znoh
V		examples/reax/{in.reax_c.rdx → in.reaxc.rdx}
V		examples/reax/{in.reax_c.tatb → in.reaxc.tatb}
V		examples/reax/{in.reaxc.rdx ← in.reax_c.rdx}
V		examples/reax/{in.reaxc.tatb ← in.reax_c.tatb}
D		examples/reax/log.reax.rdx.10Sep10.linux.1
D		examples/reax/log.reax.rdx.10Sep10.linux.4
A		examples/reax/log.reax.rdx.28Mar11.linux.1
A		examples/reax/log.reax.rdx.28Mar11.linux.4
D		examples/reax/log.reax.tatb.10Sep10.linux.1
D		examples/reax/log.reax.tatb.10Sep10.linux.4
A		examples/reax/log.reax.tatb.28Mar11.linux.1
A		examples/reax/log.reax.tatb.28Mar11.linux.4
A		examples/reax/log.reaxc.rdx.28Mar11.linux.1
A		examples/reax/log.reaxc.rdx.28Mar11.linux.4
A		examples/reax/log.reaxc.tatb.28Mar11.linux.1
A		examples/reax/log.reaxc.tatb.28Mar11.linux.4
V		examples/rigid/{log.rigid.10Sep10.linux.1 → log.rigid.28Mar11.linux.1}
V		examples/rigid/{log.rigid.10Sep10.linux.4 → log.rigid.28Mar11.linux.4}
V		examples/rigid/{log.rigid.28Mar11.linux.1 ← log.rigid.10Sep10.linux.1}
V		examples/rigid/{log.rigid.28Mar11.linux.4 ← log.rigid.10Sep10.linux.4}
D		examples/rigid/log.rigid.poems.10Sep10.linux.1
D		examples/rigid/log.rigid.poems.10Sep10.linux.4
A		examples/rigid/log.rigid.poems.28Mar11.linux.1
A		examples/rigid/log.rigid.poems.28Mar11.linux.4
D		examples/rigid/log.rigid.poems2.10Sep10.linux.1
D		examples/rigid/log.rigid.poems2.10Sep10.linux.4
A		examples/rigid/log.rigid.poems2.28Mar11.linux.1
A		examples/rigid/log.rigid.poems2.28Mar11.linux.4
V		examples/shear/{log.shear.10Sep10.linux.1 → log.shear.28Mar11.linux.1}
V		examples/shear/{log.shear.10Sep10.linux.4 → log.shear.28Mar11.linux.4}
V		examples/shear/{log.shear.28Mar11.linux.1 ← log.shear.10Sep10.linux.1}
V		examples/shear/{log.shear.28Mar11.linux.4 ← log.shear.10Sep10.linux.4}
V		examples/shear/{log.shear.void.10Sep10.linux.1 → log.shear.void.28Mar11.linux.1}
V		examples/shear/{log.shear.void.10Sep10.linux.4 → log.shear.void.28Mar11.linux.4}
V		examples/shear/{log.shear.void.28Mar11.linux.1 ← log.shear.void.10Sep10.linux.1}
V		examples/shear/{log.shear.void.28Mar11.linux.4 ← log.shear.void.10Sep10.linux.4}
V		examples/srd/{log.srd.mixture.10Sep10.linux.1 → log.srd.mixture.28Mar11.linux.1}
V		examples/srd/{log.srd.mixture.10Sep10.linux.4 → log.srd.mixture.28Mar11.linux.4}
V		examples/srd/{log.srd.mixture.28Mar11.linux.1 ← log.srd.mixture.10Sep10.linux.1}
V		examples/srd/{log.srd.mixture.28Mar11.linux.4 ← log.srd.mixture.10Sep10.linux.4}
V		examples/srd/{log.srd.pure.10Sep10.linux.1 → log.srd.pure.28Mar11.linux.1}
V		examples/srd/{log.srd.pure.10Sep10.linux.4 → log.srd.pure.28Mar11.linux.4}
V		examples/srd/{log.srd.pure.28Mar11.linux.1 ← log.srd.pure.10Sep10.linux.1}
V		examples/srd/{log.srd.pure.28Mar11.linux.4 ← log.srd.pure.10Sep10.linux.4}
V		examples/tad/{log.tad.0.1Jan11.linux.3 → log.tad.0.28Mar11.linux.3}
V		examples/tad/{log.tad.0.28Mar11.linux.3 ← log.tad.0.1Jan11.linux.3}
V		examples/tad/{log.tad.1.1Jan11.linux.3 → log.tad.1.28Mar11.linux.3}
V		examples/tad/{log.tad.1.28Mar11.linux.3 ← log.tad.1.1Jan11.linux.3}
D		examples/tad/log.tad.1Jan11.linux.3
V		examples/tad/{log.tad.2.1Jan11.linux.3 → log.tad.2.28Mar11.linux.3}
V		examples/tad/{log.tad.2.28Mar11.linux.3 ← log.tad.2.1Jan11.linux.3}
A		examples/tad/log.tad.28Mar11.linux.3
V		examples/tad/{log.tad.neb.1Jan11.linux.3 → log.tad.neb.28Mar11.linux.3}
V		examples/tad/{log.tad.neb.28Mar11.linux.3 ← log.tad.neb.1Jan11.linux.3}
M		lib/meam/meam_data.F
M		lib/meam/meam_dens_final.F
M		lib/meam/meam_dens_init.F
M		lib/meam/meam_force.F
M		lib/meam/meam_setup_done.F
M		lib/meam/meam_setup_global.F
M		lib/meam/meam_setup_param.F
M		lib/poems/poemslist.h
M		lib/poems/workspace.cpp
M		potentials/CH.airebo
M		potentials/ffield.comb
M		src/ASPHERE/atom_vec_ellipsoid.cpp
M		src/ASPHERE/atom_vec_ellipsoid.h
M		src/ASPHERE/compute_erotate_asphere.cpp
M		src/ASPHERE/compute_temp_asphere.cpp
M		src/ASPHERE/fix_nh_asphere.cpp
M		src/ASPHERE/fix_nve_asphere.cpp
M		src/ASPHERE/pair_gayberne.cpp
M		src/ASPHERE/pair_resquared.cpp
M		src/CLASS2/angle_class2.cpp
M		src/CLASS2/bond_class2.cpp
M		src/CLASS2/dihedral_class2.cpp
M		src/CLASS2/improper_class2.cpp
M		src/CLASS2/pair_lj_class2.cpp
M		src/CLASS2/pair_lj_class2_coul_cut.cpp
M		src/CLASS2/pair_lj_class2_coul_long.cpp
M		src/COLLOID/atom_vec_colloid.cpp
M		src/COLLOID/atom_vec_colloid.h
M		src/COLLOID/pair_colloid.cpp
M		src/COLLOID/pair_lubricate.cpp
M		src/DIPOLE/atom_vec_dipole.cpp
M		src/DIPOLE/atom_vec_dipole.h
M		src/DIPOLE/pair_dipole_cut.cpp
M		src/DSMC/pair_dsmc.cpp
M		src/GPU/pair_cg_cmm_coul_long_gpu.cpp
M		src/GPU/pair_cg_cmm_gpu.cpp
M		src/GPU/pair_gayberne_gpu.cpp
M		src/GPU/pair_lj96_cut_gpu.cpp
M		src/GPU/pair_lj_charmm_coul_long_gpu.cpp
M		src/GPU/pair_lj_cut_coul_cut_gpu.cpp
M		src/GPU/pair_lj_cut_coul_long_gpu.cpp
M		src/GPU/pair_lj_cut_gpu.cpp
M		src/GRANULAR/atom_vec_granular.cpp
M		src/GRANULAR/atom_vec_granular.h
M		src/GRANULAR/fix_pour.cpp
M		src/GRANULAR/fix_wall_gran.cpp
M		src/GRANULAR/pair_gran_hooke_history.cpp
M		src/KSPACE/ewald.cpp
M		src/KSPACE/pair_born_coul_long.cpp
M		src/KSPACE/pair_buck_coul_long.cpp
M		src/KSPACE/pair_coul_long.cpp
M		src/KSPACE/pair_lj_charmm_coul_long.cpp
M		src/KSPACE/pair_lj_cut_coul_long.cpp
M		src/KSPACE/pppm.cpp
M		src/KSPACE/pppm.h
M		src/MAKE/Makefile.altix
M		src/MAKE/Makefile.bgl
M		src/MAKE/Makefile.cygwin
M		src/MAKE/Makefile.encanto
M		src/MAKE/Makefile.fink
M		src/MAKE/Makefile.g++
M		src/MAKE/Makefile.g++3
M		src/MAKE/Makefile.glory
M		src/MAKE/Makefile.jaguar
M		src/MAKE/Makefile.lam
M		src/MAKE/Makefile.linux
M		src/MAKE/Makefile.mac
M		src/MAKE/Makefile.mac_mpi
M		src/MAKE/Makefile.mingw
M		src/MAKE/Makefile.mkl
M		src/MAKE/Makefile.odin
M		src/MAKE/Makefile.openmpi
M		src/MAKE/Makefile.pgi
M		src/MAKE/Makefile.power5
M		src/MAKE/Makefile.qed
M		src/MAKE/Makefile.redsky
M		src/MAKE/Makefile.sdsc
M		src/MAKE/Makefile.seaborg
M		src/MAKE/Makefile.serial
M		src/MAKE/Makefile.serial_debug
M		src/MAKE/Makefile.sgi
M		src/MAKE/Makefile.solaris
M		src/MAKE/Makefile.spirit
M		src/MAKE/Makefile.storm
M		src/MAKE/Makefile.tacc
M		src/MAKE/Makefile.tbird
M		src/MAKE/Makefile.tesla
M		src/MAKE/Makefile.tunnison
M		src/MAKE/Makefile.xt3
M		src/MANYBODY/fix_qeq_comb.cpp
P		src/MANYBODY/fix_qeq_comb.h Copied to src/compute_cluster_atom.h
M		src/MANYBODY/pair_airebo.cpp
M		src/MANYBODY/pair_airebo.h
M		src/MANYBODY/pair_comb.cpp
M		src/MANYBODY/pair_eam.cpp
M		src/MANYBODY/pair_eam_alloy.cpp
M		src/MANYBODY/pair_eam_fs.cpp
M		src/MANYBODY/pair_eim.cpp
M		src/MANYBODY/pair_sw.cpp
M		src/MANYBODY/pair_tersoff.cpp
M		src/MANYBODY/pair_tersoff_zbl.cpp
M		src/MEAM/pair_meam.cpp
M		src/MOLECULE/angle_charmm.cpp
M		src/MOLECULE/angle_cosine.cpp
M		src/MOLECULE/angle_cosine_periodic.cpp
M		src/MOLECULE/angle_cosine_squared.cpp
M		src/MOLECULE/angle_harmonic.cpp
M		src/MOLECULE/angle_hybrid.cpp
M		src/MOLECULE/angle_table.cpp
M		src/MOLECULE/atom_vec_angle.cpp
M		src/MOLECULE/atom_vec_angle.h
M		src/MOLECULE/atom_vec_bond.cpp
M		src/MOLECULE/atom_vec_bond.h
M		src/MOLECULE/atom_vec_full.cpp
M		src/MOLECULE/atom_vec_full.h
M		src/MOLECULE/atom_vec_molecular.cpp
M		src/MOLECULE/atom_vec_molecular.h
M		src/MOLECULE/bond_fene.cpp
M		src/MOLECULE/bond_fene_expand.cpp
M		src/MOLECULE/bond_harmonic.cpp
M		src/MOLECULE/bond_morse.cpp
M		src/MOLECULE/bond_nonlinear.cpp
M		src/MOLECULE/bond_quartic.cpp
M		src/MOLECULE/bond_table.cpp
M		src/MOLECULE/dihedral_charmm.cpp
M		src/MOLECULE/dihedral_harmonic.cpp
M		src/MOLECULE/dihedral_helix.cpp
M		src/MOLECULE/dihedral_hybrid.cpp
M		src/MOLECULE/dihedral_multi_harmonic.cpp
M		src/MOLECULE/dihedral_opls.cpp
M		src/MOLECULE/fix_bond_break.cpp
M		src/MOLECULE/fix_bond_create.cpp
M		src/MOLECULE/fix_bond_swap.cpp
M		src/MOLECULE/improper_cvff.cpp
M		src/MOLECULE/improper_harmonic.cpp
M		src/MOLECULE/improper_hybrid.cpp
M		src/MOLECULE/improper_umbrella.cpp
M		src/MOLECULE/pair_hbond_dreiding_lj.cpp
M		src/MOLECULE/pair_lj_charmm_coul_charmm.cpp
M		src/PERI/atom_vec_peri.cpp
M		src/PERI/atom_vec_peri.h
M		src/PERI/compute_damage_atom.cpp
M		src/PERI/fix_peri_neigh.cpp
M		src/PERI/fix_peri_neigh.h
M		src/PERI/pair_peri_lps.cpp
M		src/PERI/pair_peri_pmb.cpp
M		src/POEMS/fix_poems.cpp
M		src/REAX/fix_reax_bonds.cpp
M		src/REAX/fix_reax_bonds.h
M		src/REAX/pair_reax.cpp
M		src/REPLICA/fix_event.cpp
M		src/REPLICA/fix_event_prd.cpp
M		src/REPLICA/fix_event_prd.h
P		src/REPLICA/fix_event_tad.cpp Copied to src/memory.cpp
M		src/REPLICA/fix_event_tad.h
M		src/REPLICA/fix_neb.cpp
M		src/REPLICA/neb.cpp
M		src/REPLICA/prd.cpp
M		src/REPLICA/tad.cpp
M		src/REPLICA/temper.cpp
M		src/SRD/fix_srd.cpp
M		src/SRD/fix_wall_srd.cpp
M		src/SRD/fix_wall_srd.h
M		src/USER-ACKLAND/compute_ackland_atom.cpp
M		src/USER-CD-EAM/pair_cdeam.cpp
M		src/USER-CG-CMM/angle_cg_cmm.cpp
M		src/USER-CG-CMM/pair_cg_cmm_coul_cut.cpp
M		src/USER-CG-CMM/pair_cg_cmm_coul_long.cpp
M		src/USER-CG-CMM/pair_cmm_common.cpp
M		src/USER-EFF/Install.sh
M		src/USER-EFF/README
M		src/USER-EFF/atom_vec_electron.cpp
M		src/USER-EFF/atom_vec_electron.h
M		src/USER-EFF/compute_ke_atom_eff.cpp
M		src/USER-EFF/compute_ke_eff.cpp
P		src/USER-EFF/compute_temp_deform_eff.cpp Copied from src/compute_temp_deform.cpp
M		src/USER-EFF/compute_temp_deform_eff.h
M		src/USER-EFF/compute_temp_eff.cpp
M		src/USER-EFF/compute_temp_eff.h
P		src/USER-EFF/compute_temp_region_eff.cpp Copied from src/compute_temp_region.cpp
M		src/USER-EFF/compute_temp_region_eff.h
M		src/USER-EFF/fix_langevin_eff.cpp
M		src/USER-EFF/fix_nh_eff.cpp
M		src/USER-EFF/fix_nph_eff.h
M		src/USER-EFF/fix_npt_eff.cpp
M		src/USER-EFF/fix_nve_eff.cpp
M		src/USER-EFF/fix_nve_eff.h
M		src/USER-EFF/fix_nvt_eff.h
M		src/USER-EFF/fix_nvt_sllod_eff.cpp
M		src/USER-EFF/fix_nvt_sllod_eff.h
M		src/USER-EFF/fix_temp_rescale_eff.cpp
M		src/USER-EFF/fix_temp_rescale_eff.h
M		src/USER-EFF/pair_eff_cut.cpp
M		src/USER-EFF/pair_eff_cut.h
M		src/USER-EFF/pair_eff_inline.h
M		src/USER-EWALDN/pair_buck_coul.cpp
M		src/USER-EWALDN/pair_lj_coul.cpp
M		src/USER-IMD/fix_imd.cpp
M		src/USER-REAXC/fix_qeq_reax.cpp
M		src/USER-REAXC/fix_reax_c.cpp
M		src/USER-REAXC/pair_reax_c.cpp
M		src/USER-REAXC/reaxc_allocate.cpp
M		src/USER-REAXC/reaxc_multi_body.cpp
M		src/USER-REAXC/reaxc_nonbonded.cpp
M		src/USER-REAXC/reaxc_types.h
M		src/USER-REAXC/reaxc_valence_angles.cpp
M		src/XTC/dump_xtc.cpp
M		src/XTC/dump_xtc.h
M		src/angle.cpp
M		src/atom.cpp
M		src/atom.h
M		src/atom_vec.cpp
M		src/atom_vec.h
M		src/atom_vec_atomic.cpp
M		src/atom_vec_atomic.h
M		src/atom_vec_charge.cpp
M		src/atom_vec_charge.h
M		src/atom_vec_hybrid.cpp
M		src/atom_vec_hybrid.h
M		src/bond.cpp
M		src/bond_hybrid.cpp
M		src/comm.cpp
M		src/comm.h
M		src/compute.cpp
M		src/compute.h
M		src/compute_angle_local.cpp
M		src/compute_atom_molecule.cpp
M		src/compute_bond_local.cpp
M		src/compute_centro_atom.cpp
A		src/compute_cluster_atom.cpp
P		src/compute_cluster_atom.h Copied from src/MANYBODY/fix_qeq_comb.h
M		src/compute_cna_atom.cpp
M		src/compute_com_molecule.cpp
M		src/compute_coord_atom.cpp
M		src/compute_dihedral_local.cpp
M		src/compute_displace_atom.cpp
M		src/compute_gyration_molecule.cpp
M		src/compute_improper_local.cpp
M		src/compute_ke_atom.cpp
M		src/compute_msd_molecule.cpp
M		src/compute_pair_local.cpp
M		src/compute_pe_atom.cpp
M		src/compute_property_atom.cpp
M		src/compute_property_local.cpp
M		src/compute_property_molecule.cpp
M		src/compute_rdf.cpp
M		src/compute_reduce.cpp
M		src/compute_reduce.h
M		src/compute_reduce_region.cpp
M		src/compute_reduce_region.h
M		src/compute_stress_atom.cpp
P		src/compute_temp_deform.cpp Copied to src/USER-EFF/compute_temp_deform_eff.cpp
M		src/compute_temp_partial.cpp
M		src/compute_temp_profile.cpp
M		src/compute_temp_ramp.cpp
P		src/compute_temp_region.cpp Copied to src/USER-EFF/compute_temp_region_eff.cpp
M		src/compute_ti.cpp
M		src/create_atoms.cpp
M		src/delete_atoms.cpp
M		src/dihedral.cpp
M		src/displace_atoms.cpp
M		src/displace_box.cpp
M		src/domain.cpp
M		src/domain.h
M		src/dump.cpp
M		src/dump.h
M		src/dump_cfg.cpp
M		src/dump_custom.cpp
M		src/dump_custom.h
M		src/dump_dcd.cpp
M		src/dump_dcd.h
M		src/dump_xyz.h
M		src/finish.cpp
M		src/fix.cpp
M		src/fix.h
M		src/fix_adapt.cpp
M		src/fix_addforce.cpp
M		src/fix_ave_atom.cpp
M		src/fix_ave_atom.h
M		src/fix_ave_correlate.cpp
M		src/fix_ave_correlate.h
M		src/fix_ave_histo.cpp
M		src/fix_ave_histo.h
M		src/fix_ave_spatial.cpp
M		src/fix_ave_spatial.h
M		src/fix_ave_time.cpp
M		src/fix_ave_time.h
M		src/fix_dt_reset.h
M		src/fix_efield.cpp
M		src/fix_evaporate.cpp
M		src/fix_external.cpp
M		src/fix_langevin.cpp
M		src/fix_langevin.h
M		src/fix_minimize.cpp
M		src/fix_move.cpp
M		src/fix_nh.cpp
M		src/fix_orient_fcc.cpp
M		src/fix_read_restart.cpp
M		src/fix_respa.cpp
M		src/fix_rigid.cpp
M		src/fix_rigid_nve.cpp
M		src/fix_rigid_nvt.cpp
M		src/fix_setforce.cpp
M		src/fix_shake.cpp
M		src/fix_shake.h
M		src/fix_shear_history.cpp
M		src/fix_spring_self.cpp
M		src/fix_store_force.cpp
M		src/fix_store_state.cpp
M		src/fix_store_state.h
M		src/fix_tmd.cpp
M		src/fix_ttm.cpp
M		src/fix_wall_region.cpp
M		src/force.cpp
M		src/force.h
M		src/group.cpp
M		src/group.h
M		src/improper.cpp
M		src/input.cpp
M		src/integrate.cpp
M		src/integrate.h
M		src/irregular.cpp
M		src/irregular.h
M		src/lammps.cpp
M		src/lammps.h
M		src/lattice.cpp
M		src/library.cpp
M		src/lmptype.h
P		src/memory.cpp Copied from src/REPLICA/fix_event_tad.cpp
M		src/memory.h
M		src/min.cpp
M		src/min.h
M		src/min_cg.cpp
M		src/min_quickmin.cpp
M		src/minimize.cpp
M		src/modify.cpp
M		src/modify.h
M		src/neigh_bond.cpp
M		src/neigh_derive.cpp
M		src/neigh_full.cpp
M		src/neigh_list.cpp
M		src/neigh_list.h
M		src/neigh_request.cpp
M		src/neigh_request.h
M		src/neigh_stencil.cpp
M		src/neighbor.cpp
M		src/neighbor.h
M		src/output.cpp
M		src/output.h
M		src/pair.cpp
M		src/pair.h
M		src/pair_born.cpp
M		src/pair_buck.cpp
M		src/pair_buck_coul_cut.cpp
M		src/pair_coul_cut.cpp
M		src/pair_dpd.cpp
M		src/pair_gauss.cpp
M		src/pair_hybrid.cpp
M		src/pair_lj96_cut.cpp
M		src/pair_lj_cut.cpp
M		src/pair_lj_cut_coul_cut.cpp
M		src/pair_lj_expand.cpp
M		src/pair_lj_gromacs.cpp
M		src/pair_lj_gromacs_coul_gromacs.cpp
M		src/pair_lj_smooth.cpp
M		src/pair_morse.cpp
M		src/pair_soft.cpp
M		src/pair_table.cpp
M		src/pair_yukawa.cpp
M		src/pointers.h
M		src/read_data.cpp
M		src/read_restart.cpp
M		src/read_restart.h
M		src/region.h
M		src/replicate.cpp
M		src/respa.cpp
M		src/run.cpp
M		src/special.cpp
M		src/thermo.cpp
M		src/thermo.h
M		src/timer.cpp
M		src/universe.cpp
M		src/universe.h
M		src/update.cpp
M		src/update.h
M		src/variable.cpp
M		src/velocity.cpp
M		src/version.h
M		src/write_restart.cpp
M		src/write_restart.h
M		tools/README
M		tools/eff/README
M		tools/eff/VMD-input.py
A		tools/eff/bohr2ang.py
M		tools/eff/cfg2lammps.py
M		tools/eff/lmp2radii.py
M		tools/eff/lmp2radii.pyx
M		tools/eff/lmp2radii_col.py
M		tools/eff/lmp2xyz.py
M		tools/eff/radii.vmd
A		tools/eff/restart2data-pEFF.cpp
A		tools/eff/structure_generators/Li-solid-angstrom.pl
M		tools/python/pizza/dump.py
M		tools/python/pizza/log.py