| | | | Path |
|---|
| | M | | | doc/html/Manual.html |
| | M | | | doc/html/Section_commands.html |
| | M | | | doc/html/Section_example.html |
| | M | | | doc/html/Section_perf.html |
| | D | | | doc/html/_images/fix_ti_rs_force.jpg |
| | D | | | doc/html/_images/fix_ti_rs_function_1.jpg |
| | D | | | doc/html/_images/fix_ti_rs_function_2.jpg |
| | D | | | doc/html/_images/fix_ti_rs_function_3.jpg |
| | M | | | doc/html/_images/fix_ti_spring_force.jpg |
| | M | | | doc/html/_images/fix_ti_spring_function_1.jpg |
| | M | | | doc/html/_images/fix_ti_spring_function_2.jpg |
| | M | | | doc/html/angle_coeff.html |
| | M | | | doc/html/angle_hybrid.html |
| | M | | | doc/html/angle_none.html |
| | M | | | doc/html/angle_style.html |
| | M | | | doc/html/angle_zero.html |
| | M | | | doc/html/atom_modify.html |
| | M | | | doc/html/bond_coeff.html |
| | M | | | doc/html/bond_hybrid.html |
| | M | | | doc/html/bond_none.html |
| | M | | | doc/html/bond_style.html |
| | M | | | doc/html/bond_write.html |
| | M | | | doc/html/bond_zero.html |
| | M | | | doc/html/box.html |
| | M | | | doc/html/clear.html |
| | M | | | doc/html/comm_modify.html |
| | M | | | doc/html/comm_style.html |
| | M | | | doc/html/compute.html |
| | M | | | doc/html/compute_angle.html |
| | M | | | doc/html/compute_angle_local.html |
| | M | | | doc/html/compute_bond.html |
| | M | | | doc/html/compute_bond_local.html |
| | M | | | doc/html/compute_com.html |
| | M | | | doc/html/compute_dihedral.html |
| | M | | | doc/html/compute_dihedral_local.html |
| | M | | | doc/html/compute_dilatation_atom.html |
| | M | | | doc/html/compute_group_group.html |
| | M | | | doc/html/compute_improper.html |
| | M | | | doc/html/compute_improper_local.html |
| | M | | | doc/html/compute_modify.html |
| | M | | | doc/html/compute_msd.html |
| | M | | | doc/html/compute_msd_nongauss.html |
| | M | | | doc/html/compute_pair.html |
| | M | | | doc/html/compute_pair_local.html |
| | M | | | doc/html/compute_plasticity_atom.html |
| | M | | | doc/html/compute_property_atom.html |
| | M | | | doc/html/compute_property_local.html |
| | M | | | doc/html/compute_rigid_local.html |
| | M | | | doc/html/compute_saed.html |
| | M | | | doc/html/compute_slice.html |
| | M | | | doc/html/compute_smd_damage.html |
| | M | | | doc/html/compute_smd_hourglass_error.html |
| | M | | | doc/html/compute_smd_internal_energy.html |
| | M | | | doc/html/compute_smd_plastic_strain.html |
| | M | | | doc/html/compute_smd_plastic_strain_rate.html |
| | M | | | doc/html/compute_smd_rho.html |
| | M | | | doc/html/compute_smd_tlsph_defgrad.html |
| | M | | | doc/html/compute_smd_tlsph_dt.html |
| | M | | | doc/html/compute_smd_tlsph_num_neighs.html |
| | M | | | doc/html/compute_smd_tlsph_shape.html |
| | M | | | doc/html/compute_smd_tlsph_strain.html |
| | M | | | doc/html/compute_smd_tlsph_strain_rate.html |
| | M | | | doc/html/compute_smd_tlsph_stress.html |
| | M | | | doc/html/compute_smd_vol.html |
| | M | | | doc/html/compute_tally.html |
| | M | | | doc/html/compute_temp_asphere.html |
| | M | | | doc/html/compute_temp_body.html |
| | M | | | doc/html/compute_temp_com.html |
| | M | | | doc/html/compute_temp_deform.html |
| | M | | | doc/html/compute_temp_deform_eff.html |
| | M | | | doc/html/compute_temp_drude.html |
| | M | | | doc/html/compute_temp_eff.html |
| | M | | | doc/html/compute_temp_profile.html |
| | M | | | doc/html/compute_temp_ramp.html |
| | M | | | doc/html/compute_temp_region.html |
| | M | | | doc/html/compute_temp_region_eff.html |
| | M | | | doc/html/compute_temp_rotate.html |
| | M | | | doc/html/compute_temp_sphere.html |
| | M | | | doc/html/compute_vacf.html |
| | M | | | doc/html/create_atoms.html |
| | M | | | doc/html/create_bonds.html |
| | M | | | doc/html/delete_atoms.html |
| | M | | | doc/html/delete_bonds.html |
| | M | | | doc/html/dielectric.html |
| | M | | | doc/html/dihedral_hybrid.html |
| | M | | | doc/html/dihedral_none.html |
| | M | | | doc/html/dihedral_zero.html |
| | M | | | doc/html/displace_atoms.html |
| | M | | | doc/html/dump_h5md.html |
| | M | | | doc/html/dump_modify.html |
| | M | | | doc/html/dump_molfile.html |
| | M | | | doc/html/echo.html |
| | M | | | doc/html/fix.html |
| | M | | | doc/html/fix_adapt.html |
| | M | | | doc/html/fix_adapt_fep.html |
| | M | | | doc/html/fix_addforce.html |
| | M | | | doc/html/fix_addtorque.html |
| | M | | | doc/html/fix_append_atoms.html |
| | M | | | doc/html/fix_atc.html |
| | M | | | doc/html/fix_atom_swap.html |
| | M | | | doc/html/fix_ave_atom.html |
| | M | | | doc/html/fix_ave_chunk.html |
| | M | | | doc/html/fix_ave_correlate.html |
| | M | | | doc/html/fix_ave_correlate_long.html |
| | M | | | doc/html/fix_ave_histo.html |
| | M | | | doc/html/fix_ave_time.html |
| | M | | | doc/html/fix_aveforce.html |
| | M | | | doc/html/fix_balance.html |
| | M | | | doc/html/fix_bond_break.html |
| | M | | | doc/html/fix_bond_create.html |
| | M | | | doc/html/fix_bond_swap.html |
| | M | | | doc/html/fix_box_relax.html |
| | M | | | doc/html/fix_colvars.html |
| | M | | | doc/html/fix_controller.html |
| | M | | | doc/html/fix_deform.html |
| | M | | | doc/html/fix_deposit.html |
| | M | | | doc/html/fix_drag.html |
| | M | | | doc/html/fix_drude.html |
| | M | | | doc/html/fix_drude_transform.html |
| | M | | | doc/html/fix_dt_reset.html |
| | M | | | doc/html/fix_efield.html |
| | M | | | doc/html/fix_ehex.html |
| | M | | | doc/html/fix_enforce2d.html |
| | M | | | doc/html/fix_eos_cv.html |
| | M | | | doc/html/fix_eos_table.html |
| | M | | | doc/html/fix_eos_table_rx.html |
| | M | | | doc/html/fix_evaporate.html |
| | M | | | doc/html/fix_external.html |
| | M | | | doc/html/fix_flow_gauss.html |
| | M | | | doc/html/fix_freeze.html |
| | M | | | doc/html/fix_gcmc.html |
| | M | | | doc/html/fix_gld.html |
| | M | | | doc/html/fix_gle.html |
| | M | | | doc/html/fix_gravity.html |
| | M | | | doc/html/fix_heat.html |
| | M | | | doc/html/fix_imd.html |
| | M | | | doc/html/fix_indent.html |
| | M | | | doc/html/fix_ipi.html |
| | M | | | doc/html/fix_langevin.html |
| | M | | | doc/html/fix_langevin_drude.html |
| | M | | | doc/html/fix_langevin_eff.html |
| | M | | | doc/html/fix_lb_fluid.html |
| | M | | | doc/html/fix_lb_momentum.html |
| | M | | | doc/html/fix_lb_pc.html |
| | M | | | doc/html/fix_lb_rigid_pc_sphere.html |
| | M | | | doc/html/fix_lb_viscous.html |
| | M | | | doc/html/fix_lineforce.html |
| | M | | | doc/html/fix_manifoldforce.html |
| | M | | | doc/html/fix_meso.html |
| | M | | | doc/html/fix_meso_stationary.html |
| | M | | | doc/html/fix_modify.html |
| | M | | | doc/html/fix_momentum.html |
| | M | | | doc/html/fix_move.html |
| | M | | | doc/html/fix_msst.html |
| | M | | | doc/html/fix_neb.html |
| | M | | | doc/html/fix_nh.html |
| | M | | | doc/html/fix_nh_eff.html |
| | M | | | doc/html/fix_nph_asphere.html |
| | M | | | doc/html/fix_nph_body.html |
| | M | | | doc/html/fix_nph_sphere.html |
| | M | | | doc/html/fix_nphug.html |
| | M | | | doc/html/fix_npt_asphere.html |
| | M | | | doc/html/fix_npt_body.html |
| | M | | | doc/html/fix_npt_sphere.html |
| | M | | | doc/html/fix_nve.html |
| | M | | | doc/html/fix_nve_asphere.html |
| | M | | | doc/html/fix_nve_asphere_noforce.html |
| | M | | | doc/html/fix_nve_body.html |
| | M | | | doc/html/fix_nve_eff.html |
| | M | | | doc/html/fix_nve_limit.html |
| | M | | | doc/html/fix_nve_line.html |
| | M | | | doc/html/fix_nve_manifold_rattle.html |
| | M | | | doc/html/fix_nve_noforce.html |
| | M | | | doc/html/fix_nve_sphere.html |
| | M | | | doc/html/fix_nve_tri.html |
| | M | | | doc/html/fix_nvt_asphere.html |
| | M | | | doc/html/fix_nvt_body.html |
| | M | | | doc/html/fix_nvt_manifold_rattle.html |
| | M | | | doc/html/fix_nvt_sllod.html |
| | M | | | doc/html/fix_nvt_sllod_eff.html |
| | M | | | doc/html/fix_nvt_sphere.html |
| | M | | | doc/html/fix_oneway.html |
| | M | | | doc/html/fix_orient.html |
| | M | | | doc/html/fix_phonon.html |
| | M | | | doc/html/fix_pimd.html |
| | M | | | doc/html/fix_planeforce.html |
| | M | | | doc/html/fix_poems.html |
| | M | | | doc/html/fix_pour.html |
| | M | | | doc/html/fix_press_berendsen.html |
| | M | | | doc/html/fix_print.html |
| | M | | | doc/html/fix_property_atom.html |
| | M | | | doc/html/fix_qbmsst.html |
| | M | | | doc/html/fix_qeq.html |
| | M | | | doc/html/fix_qeq_comb.html |
| | M | | | doc/html/fix_qeq_reax.html |
| | M | | | doc/html/fix_qmmm.html |
| | M | | | doc/html/fix_qtb.html |
| | M | | | doc/html/fix_reax_bonds.html |
| | M | | | doc/html/fix_reaxc_species.html |
| | M | | | doc/html/fix_recenter.html |
| | M | | | doc/html/fix_restrain.html |
| | M | | | doc/html/fix_rigid.html |
| | M | | | doc/html/fix_rx.html |
| | M | | | doc/html/fix_saed_vtk.html |
| | M | | | doc/html/fix_setforce.html |
| | M | | | doc/html/fix_shake.html |
| | M | | | doc/html/fix_shardlow.html |
| | M | | | doc/html/fix_smd.html |
| | M | | | doc/html/fix_smd_adjust_dt.html |
| | M | | | doc/html/fix_smd_integrate_tlsph.html |
| | M | | | doc/html/fix_smd_integrate_ulsph.html |
| | M | | | doc/html/fix_smd_move_triangulated_surface.html |
| | M | | | doc/html/fix_smd_setvel.html |
| | M | | | doc/html/fix_smd_wall_surface.html |
| | M | | | doc/html/fix_spring.html |
| | M | | | doc/html/fix_spring_chunk.html |
| | M | | | doc/html/fix_spring_rg.html |
| | M | | | doc/html/fix_spring_self.html |
| | M | | | doc/html/fix_srd.html |
| | M | | | doc/html/fix_store_force.html |
| | M | | | doc/html/fix_store_state.html |
| | M | | | doc/html/fix_temp_berendsen.html |
| | M | | | doc/html/fix_temp_csvr.html |
| | M | | | doc/html/fix_temp_rescale.html |
| | M | | | doc/html/fix_temp_rescale_eff.html |
| | M | | | doc/html/fix_tfmc.html |
| | M | | | doc/html/fix_thermal_conductivity.html |
| | D | | | doc/html/fix_ti_rs.html |
| | M | | | doc/html/fix_ti_spring.html |
| | M | | | doc/html/fix_tmd.html |
| | M | | | doc/html/fix_ttm.html |
| | M | | | doc/html/fix_tune_kspace.html |
| | M | | | doc/html/fix_vector.html |
| | M | | | doc/html/fix_viscosity.html |
| | M | | | doc/html/fix_viscous.html |
| | M | | | doc/html/fix_wall.html |
| | M | | | doc/html/fix_wall_gran.html |
| | M | | | doc/html/fix_wall_piston.html |
| | M | | | doc/html/fix_wall_reflect.html |
| | M | | | doc/html/fix_wall_region.html |
| | M | | | doc/html/fix_wall_srd.html |
| | M | | | doc/html/fixes.html |
| | M | | | doc/html/genindex.html |
| | M | | | doc/html/group2ndx.html |
| | M | | | doc/html/improper_coeff.html |
| | M | | | doc/html/improper_hybrid.html |
| | M | | | doc/html/improper_none.html |
| | M | | | doc/html/improper_style.html |
| | M | | | doc/html/improper_zero.html |
| | M | | | doc/html/include.html |
| | M | | | doc/html/info.html |
| | M | | | doc/html/jump.html |
| | M | | | doc/html/kspace_modify.html |
| | M | | | doc/html/label.html |
| | M | | | doc/html/lattice.html |
| | M | | | doc/html/mass.html |
| | M | | | doc/html/min_modify.html |
| | M | | | doc/html/min_style.html |
| | M | | | doc/html/neigh_modify.html |
| | M | | | doc/html/neighbor.html |
| | M | | | doc/html/newton.html |
| | M | | | doc/html/next.html |
| | M | | | doc/html/package.html |
| | M | | | doc/html/pair_awpmd.html |
| | M | | | doc/html/pair_brownian.html |
| | M | | | doc/html/pair_coeff.html |
| | M | | | doc/html/pair_dsmc.html |
| | M | | | doc/html/pair_eff.html |
| | M | | | doc/html/pair_kim.html |
| | M | | | doc/html/pair_lcbop.html |
| | M | | | doc/html/pair_line_lj.html |
| | M | | | doc/html/pair_list.html |
| | M | | | doc/html/pair_mdf.html |
| | M | | | doc/html/pair_modify.html |
| | M | | | doc/html/pair_none.html |
| | M | | | doc/html/pair_quip.html |
| | M | | | doc/html/pair_reax.html |
| | M | | | doc/html/pair_smd_hertz.html |
| | M | | | doc/html/pair_smd_tlsph.html |
| | M | | | doc/html/pair_smd_triangulated_surface.html |
| | M | | | doc/html/pair_smd_ulsph.html |
| | M | | | doc/html/pair_smtbq.html |
| | M | | | doc/html/pair_sph_heatconduction.html |
| | M | | | doc/html/pair_sph_lj.html |
| | M | | | doc/html/pair_sph_rhosum.html |
| | M | | | doc/html/pair_srp.html |
| | M | | | doc/html/pair_style.html |
| | M | | | doc/html/pair_table.html |
| | M | | | doc/html/pair_table_rx.html |
| | M | | | doc/html/pair_thole.html |
| | M | | | doc/html/pair_tri_lj.html |
| | M | | | doc/html/pair_write.html |
| | M | | | doc/html/pair_zero.html |
| | M | | | doc/html/print.html |
| | M | | | doc/html/processors.html |
| | M | | | doc/html/python.html |
| | M | | | doc/html/quit.html |
| | M | | | doc/html/read_dump.html |
| | M | | | doc/html/region.html |
| | M | | | doc/html/replicate.html |
| | M | | | doc/html/rerun.html |
| | M | | | doc/html/reset_timestep.html |
| | M | | | doc/html/restart.html |
| | M | | | doc/html/run.html |
| | M | | | doc/html/set.html |
| | M | | | doc/html/shell.html |
| | M | | | doc/html/special_bonds.html |
| | M | | | doc/html/suffix.html |
| | M | | | doc/html/thermo.html |
| | M | | | doc/html/thermo_modify.html |
| | M | | | doc/html/timer.html |
| | M | | | doc/html/timestep.html |
| | M | | | doc/html/tutorial_drude.html |
| | M | | | doc/html/uncompute.html |
| | M | | | doc/html/undump.html |
| | M | | | doc/html/unfix.html |
| | M | | | doc/html/units.html |
| | M | | | doc/html/variable.html |
| | M | | | doc/html/velocity.html |
| | M | | | doc/html/write_coeff.html |
| | M | | | doc/html/write_data.html |
| | M | | | doc/html/write_dump.html |
| | M | | | doc/html/write_restart.html |
| | D | | | doc/src/Eqs/fix_ti_rs_force.jpg |
| | D | | | doc/src/Eqs/fix_ti_rs_force.tex |
| | D | | | doc/src/Eqs/fix_ti_rs_function_1.jpg |
| | D | | | doc/src/Eqs/fix_ti_rs_function_1.tex |
| | D | | | doc/src/Eqs/fix_ti_rs_function_2.jpg |
| | D | | | doc/src/Eqs/fix_ti_rs_function_2.tex |
| | D | | | doc/src/Eqs/fix_ti_rs_function_3.jpg |
| | D | | | doc/src/Eqs/fix_ti_rs_function_3.tex |
| | M | | | doc/src/Eqs/fix_ti_spring_force.jpg |
| | M | | | doc/src/Eqs/fix_ti_spring_force.tex |
| | M | | | doc/src/Eqs/fix_ti_spring_function_1.jpg |
| | M | | | doc/src/Eqs/fix_ti_spring_function_2.jpg |
| | M | | | doc/src/Manual.txt |
| | M | | | doc/src/Section_commands.txt |
| | D | | | doc/src/fix_ti_rs.txt |
| | M | | | doc/src/fix_ti_spring.txt |
| | M | | | doc/src/region.txt |
| | D | | | examples/USER/misc/ti/in.ti_rs |
| | M | | | examples/USER/misc/ti/in.ti_spring |
| | M | | | src/MANYBODY/pair_eam.cpp |
| | M | | | src/MANYBODY/pair_eam.h |
| | M | | | src/USER-MISC/README |
| | D | | | src/USER-MISC/fix_ti_rs.cpp |
| | D | | | src/USER-MISC/fix_ti_rs.h |
| | M | | | src/USER-MISC/fix_ti_spring.cpp |
| | M | | | src/USER-MISC/fix_ti_spring.h |
| | M | | | src/fix_shear_history.cpp |
| | M | | | src/version.h |
