Merge branch 'master' into ak-fix
c18174c0ece0
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Authored by Axel Kohlmeyer <akohlmey@gmail.com> on Sep 24 2011, 19:49.

Description

Merge branch 'master' into ak-fix

Resolved Conflicts:
src/GPU/pair_cg_cmm_gpu.cpp
src/read_data.cpp

Details

Committed

Axel Kohlmeyer <akohlmey@gmail.com>

Sep 24 2011, 19:49

Pushed

junge

Oct 6 2016, 16:49

Parents

rLAMMPS11a5c28c9c7e: fix memory allocation bug.
rLAMMPSafc72c791349: git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@7012 f3b2605a-c512-4ea7…

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Axel Kohlmeyer <akohlmey@gmail.com> committed rLAMMPSc18174c0ece0: Merge branch 'master' into ak-fix (authored by Axel Kohlmeyer <akohlmey@gmail.com>).Sep 24 2011, 19:49

Merged Changes

Commit	Author	Details	Committed
afc72c791349	sjplimp	git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@7012 f3b2605a-c512-4ea7…	Sep 24 2011
9c1ec9764e92	sjplimp	git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@7011 f3b2605a-c512-4ea7…	Sep 24 2011
b942af38b223	sjplimp	git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@7010 f3b2605a-c512-4ea7…	Sep 24 2011
6b73c2cdf802	sjplimp	git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@7009 f3b2605a-c512-4ea7…	Sep 23 2011
c0a3d0aa9a8f	sjplimp	git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@7008 f3b2605a-c512-4ea7…	Sep 23 2011
7873e97fc350	sjplimp	git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@7006 f3b2605a-c512-4ea7…	Sep 23 2011
e6fac7cd8a7b	sjplimp	git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@7005 f3b2605a-c512-4ea7…	Sep 23 2011
d296662af68c	sjplimp	git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@7004 f3b2605a-c512-4ea7…	Sep 23 2011
19e8c92a906e	sjplimp	git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@7003 f3b2605a-c512-4ea7…	Sep 23 2011
2d99de131d05	sjplimp	git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@7001 f3b2605a-c512-4ea7…	Sep 23 2011
1ba435ee1865	sjplimp	git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@7000 f3b2605a-c512-4ea7…	Sep 23 2011
cd6cff618686	sjplimp	git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@6999 f3b2605a-c512-4ea7…	Sep 23 2011
1ab03c7ee003	sjplimp	git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@6998 f3b2605a-c512-4ea7…	Sep 23 2011

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				Path
	M			README
	M			doc/Section_errors.html
	M			doc/Section_errors.txt
	M			src/ASPHERE/compute_erotate_asphere.cpp
	M			src/ASPHERE/compute_temp_asphere.cpp
	M			src/ASPHERE/fix_nh_asphere.cpp
	M			src/ASPHERE/fix_nph_asphere.cpp
	M			src/ASPHERE/fix_npt_asphere.cpp
	M			src/ASPHERE/fix_nve_asphere.cpp
	M			src/ASPHERE/fix_nvt_asphere.cpp
	M			src/ASPHERE/pair_gayberne.cpp
	M			src/ASPHERE/pair_resquared.cpp
	M			src/CLASS2/angle_class2.cpp
	M			src/CLASS2/bond_class2.cpp
	M			src/CLASS2/dihedral_class2.cpp
	M			src/CLASS2/improper_class2.cpp
	M			src/CLASS2/pair_lj_class2.cpp
	M			src/CLASS2/pair_lj_class2_coul_cut.cpp
	M			src/CLASS2/pair_lj_class2_coul_long.cpp
	M			src/COLLOID/fix_wall_colloid.cpp
	M			src/COLLOID/pair_colloid.cpp
	M			src/COLLOID/pair_lubricate.cpp
	M			src/COLLOID/pair_yukawa_colloid.cpp
	M			src/DIPOLE/atom_vec_dipole.cpp
	M			src/DIPOLE/pair_dipole_cut.cpp
	M			src/GPU/fix_gpu.cpp
	M			src/GPU/gpu_extra.h
	M			src/GPU/pair_cg_cmm_coul_long_gpu.cpp
	M			src/GPU/pair_cg_cmm_coul_msm.cpp
	M			src/GPU/pair_cg_cmm_coul_msm_gpu.cpp
	M			src/GPU/pair_cg_cmm_gpu.cpp
	M			src/GPU/pair_coul_long_gpu.cpp
	M			src/GPU/pair_gayberne_gpu.cpp
	M			src/GPU/pair_lj96_cut_gpu.cpp
	M			src/GPU/pair_lj_charmm_coul_long_gpu.cpp
	M			src/GPU/pair_lj_class2_coul_long_gpu.cpp
	M			src/GPU/pair_lj_class2_gpu.cpp
	M			src/GPU/pair_lj_cut_coul_cut_gpu.cpp
	M			src/GPU/pair_lj_cut_coul_long_gpu.cpp
	M			src/GPU/pair_lj_cut_gpu.cpp
	M			src/GPU/pair_lj_cut_tgpu.cpp
	M			src/GPU/pair_lj_expand_gpu.cpp
	M			src/GPU/pair_morse_gpu.cpp
	M			src/GPU/pair_resquared_gpu.cpp
	M			src/GPU/pppm_gpu.cpp
	M			src/GRANULAR/fix_freeze.cpp
	M			src/GRANULAR/fix_pour.cpp
	M			src/GRANULAR/fix_wall_gran.cpp
	M			src/GRANULAR/pair_gran_hertz_history.cpp
	M			src/GRANULAR/pair_gran_hooke.cpp
	M			src/GRANULAR/pair_gran_hooke_history.cpp
	M			src/KSPACE/ewald.cpp
	M			src/KSPACE/fft3d_wrap.cpp
	M			src/KSPACE/pair_born_coul_long.cpp
	M			src/KSPACE/pair_buck_coul_long.cpp
	M			src/KSPACE/pair_coul_long.cpp
	M			src/KSPACE/pair_lj_charmm_coul_long.cpp
	M			src/KSPACE/pair_lj_cut_coul_long.cpp
	M			src/KSPACE/pair_lj_cut_coul_long_tip4p.cpp
	M			src/KSPACE/pppm.cpp
	M			src/KSPACE/pppm_cg.cpp
	M			src/KSPACE/pppm_tip4p.cpp
	M			src/KSPACE/remap_wrap.cpp
	M			src/MANYBODY/fix_qeq_comb.cpp
	M			src/MANYBODY/pair_adp.cpp
	M			src/MANYBODY/pair_airebo.cpp
	M			src/MANYBODY/pair_comb.cpp
	M			src/MANYBODY/pair_eam.cpp
	M			src/MANYBODY/pair_eam_alloy.cpp
	M			src/MANYBODY/pair_eam_fs.cpp
	M			src/MANYBODY/pair_eim.cpp
	M			src/MANYBODY/pair_rebo.cpp
	M			src/MANYBODY/pair_sw.cpp
	M			src/MANYBODY/pair_tersoff.cpp
	M			src/MANYBODY/pair_tersoff_zbl.cpp
	M			src/MC/fix_bond_break.cpp
	M			src/MC/fix_bond_create.cpp
	M			src/MC/fix_bond_swap.cpp
	M			src/MC/fix_gcmc.cpp
	M			src/MC/pair_dsmc.cpp
	M			src/MEAM/pair_meam.cpp
	M			src/MOLECULE/angle_charmm.cpp
	M			src/MOLECULE/angle_cosine.cpp
	M			src/MOLECULE/angle_cosine_periodic.cpp
	M			src/MOLECULE/angle_cosine_squared.cpp
	M			src/MOLECULE/angle_harmonic.cpp
	M			src/MOLECULE/angle_hybrid.cpp
	M			src/MOLECULE/angle_table.cpp
	M			src/MOLECULE/atom_vec_angle.cpp
	M			src/MOLECULE/atom_vec_bond.cpp
	M			src/MOLECULE/atom_vec_full.cpp
	M			src/MOLECULE/atom_vec_molecular.cpp
	M			src/MOLECULE/bond_fene.cpp
	M			src/MOLECULE/bond_fene_expand.cpp
	M			src/MOLECULE/bond_harmonic.cpp
	M			src/MOLECULE/bond_morse.cpp
	M			src/MOLECULE/bond_nonlinear.cpp
	M			src/MOLECULE/bond_quartic.cpp
	M			src/MOLECULE/bond_table.cpp
	M			src/MOLECULE/dihedral_charmm.cpp
	M			src/MOLECULE/dihedral_harmonic.cpp
	M			src/MOLECULE/dihedral_helix.cpp
	M			src/MOLECULE/dihedral_hybrid.cpp
	M			src/MOLECULE/dihedral_multi_harmonic.cpp
	M			src/MOLECULE/dihedral_opls.cpp
	M			src/MOLECULE/improper_cvff.cpp
	M			src/MOLECULE/improper_harmonic.cpp
	M			src/MOLECULE/improper_hybrid.cpp
	M			src/MOLECULE/improper_umbrella.cpp
	M			src/MOLECULE/pair_hbond_dreiding_lj.cpp
	M			src/MOLECULE/pair_hbond_dreiding_morse.cpp
	M			src/MOLECULE/pair_lj_charmm_coul_charmm.cpp
	M			src/Makefile
	M			src/Makefile.lib
	M			src/Makefile.list
	M			src/OPT/pair_eam_opt.cpp
	M			src/OPT/pair_lj_charmm_coul_long_opt.cpp
	M			src/PERI/atom_vec_peri.cpp
	M			src/PERI/compute_damage_atom.cpp
	M			src/PERI/fix_peri_neigh.cpp
	M			src/PERI/pair_peri_lps.cpp
	M			src/PERI/pair_peri_pmb.cpp
	M			src/POEMS/fix_poems.cpp
	M			src/REAX/fix_reax_bonds.cpp
	M			src/REAX/pair_reax.cpp
	M			src/REPLICA/compute_event_displace.cpp
	M			src/REPLICA/fix_event.cpp
	M			src/REPLICA/fix_event_prd.cpp
	M			src/REPLICA/fix_event_tad.cpp
	M			src/REPLICA/fix_neb.cpp
	M			src/REPLICA/neb.cpp
	M			src/REPLICA/prd.cpp
	M			src/REPLICA/tad.cpp
	M			src/REPLICA/temper.cpp
	M			src/SHOCK/fix_append_atoms.cpp
	M			src/SHOCK/fix_msst.cpp
	M			src/SHOCK/fix_nphug.cpp
	M			src/SHOCK/fix_wall_piston.cpp
	M			src/SRD/fix_srd.cpp
	M			src/SRD/fix_wall_srd.cpp
	M			src/USER-ATC/fix_atc.cpp
	M			src/USER-AWPMD/atom_vec_wavepacket.cpp
	M			src/USER-AWPMD/fix_nve_awpmd.cpp
	M			src/USER-AWPMD/pair_awpmd_cut.cpp
	M			src/USER-CG-CMM/angle_cg_cmm.cpp
	M			src/USER-CG-CMM/pair_cg_cmm_coul_cut.cpp
	M			src/USER-CG-CMM/pair_cg_cmm_coul_long.cpp
	M			src/USER-CG-CMM/pair_cmm_common.cpp
	M			src/USER-CUDA/atom_vec_angle_cuda.cpp
	M			src/USER-CUDA/atom_vec_atomic_cuda.cpp
	M			src/USER-CUDA/atom_vec_charge_cuda.cpp
	M			src/USER-CUDA/atom_vec_full_cuda.cpp
	M			src/USER-CUDA/comm_cuda.cpp
	M			src/USER-CUDA/compute_pressure_cuda.cpp
	M			src/USER-CUDA/compute_temp_cuda.cpp
	M			src/USER-CUDA/compute_temp_partial_cuda.cpp
	M			src/USER-CUDA/cuda.cpp
	M			src/USER-CUDA/cuda_neigh_list.cpp
	M			src/USER-CUDA/domain_cuda.cpp
	M			src/USER-CUDA/fft3d_cuda.cpp
	M			src/USER-CUDA/fft3d_wrap_cuda.cpp
	M			src/USER-CUDA/fix_addforce_cuda.cpp
	M			src/USER-CUDA/fix_aveforce_cuda.cpp
	M			src/USER-CUDA/fix_enforce2d_cuda.cpp
	M			src/USER-CUDA/fix_freeze_cuda.cpp
	M			src/USER-CUDA/fix_gravity_cuda.cpp
	M			src/USER-CUDA/fix_nh_cuda.cpp
	M			src/USER-CUDA/fix_npt_cuda.cpp
	M			src/USER-CUDA/fix_nve_cuda.cpp
	M			src/USER-CUDA/fix_nvt_cuda.cpp
	M			src/USER-CUDA/fix_set_force_cuda.cpp
	M			src/USER-CUDA/fix_shake_cuda.cpp
	M			src/USER-CUDA/fix_temp_berendsen_cuda.cpp
	M			src/USER-CUDA/fix_temp_rescale_cuda.cpp
	M			src/USER-CUDA/fix_temp_rescale_limit_cuda.cpp
	M			src/USER-CUDA/fix_viscous_cuda.cpp
	M			src/USER-CUDA/modify_cuda.cpp
	M			src/USER-CUDA/neigh_full_cuda.cpp
	M			src/USER-CUDA/neighbor_cuda.cpp
	M			src/USER-CUDA/pair_born_coul_long_cuda.cpp
	M			src/USER-CUDA/pair_buck_coul_cut_cuda.cpp
	M			src/USER-CUDA/pair_buck_coul_long_cuda.cpp
	M			src/USER-CUDA/pair_buck_cuda.cpp
	M			src/USER-CUDA/pair_cg_cmm_coul_cut_cuda.cpp
	M			src/USER-CUDA/pair_cg_cmm_coul_debye_cuda.cpp
	M			src/USER-CUDA/pair_cg_cmm_coul_long_cuda.cpp
	M			src/USER-CUDA/pair_cg_cmm_cuda.cpp
	M			src/USER-CUDA/pair_eam_alloy_cuda.cpp
	M			src/USER-CUDA/pair_eam_cuda.cpp
	M			src/USER-CUDA/pair_eam_fs_cuda.cpp
	M			src/USER-CUDA/pair_gran_hooke_cuda.cpp
	M			src/USER-CUDA/pair_lj96_cut_cuda.cpp
	M			src/USER-CUDA/pair_lj_charmm_coul_charmm_cuda.cpp
	M			src/USER-CUDA/pair_lj_charmm_coul_charmm_implicit_cuda.cpp
	M			src/USER-CUDA/pair_lj_charmm_coul_long_cuda.cpp
	M			src/USER-CUDA/pair_lj_class2_coul_cut_cuda.cpp
	M			src/USER-CUDA/pair_lj_class2_coul_long_cuda.cpp
	M			src/USER-CUDA/pair_lj_class2_cuda.cpp
	M			src/USER-CUDA/pair_lj_cut_coul_cut_cuda.cpp
	M			src/USER-CUDA/pair_lj_cut_coul_debye_cuda.cpp
	M			src/USER-CUDA/pair_lj_cut_coul_long_cuda.cpp
	M			src/USER-CUDA/pair_lj_cut_cuda.cpp
	M			src/USER-CUDA/pair_lj_cut_experimental_cuda.cpp
	M			src/USER-CUDA/pair_lj_expand_cuda.cpp
	M			src/USER-CUDA/pair_lj_gromacs_coul_gromacs_cuda.cpp
	M			src/USER-CUDA/pair_lj_gromacs_cuda.cpp
	M			src/USER-CUDA/pair_lj_smooth_cuda.cpp
	M			src/USER-CUDA/pair_morse_cuda.cpp
	M			src/USER-CUDA/pppm_cuda.cpp
	M			src/USER-CUDA/verlet_cuda.cpp
	M			src/USER-EFF/atom_vec_electron.cpp
	M			src/USER-EFF/compute_ke_atom_eff.cpp
	M			src/USER-EFF/compute_ke_eff.cpp
	M			src/USER-EFF/compute_temp_deform_eff.cpp
	M			src/USER-EFF/compute_temp_eff.cpp
	M			src/USER-EFF/compute_temp_region_eff.cpp
	M			src/USER-EFF/fix_nh_eff.cpp
	M			src/USER-EFF/fix_nph_eff.cpp
	M			src/USER-EFF/fix_npt_eff.cpp
	M			src/USER-EFF/fix_nve_eff.cpp
	M			src/USER-EFF/fix_nvt_eff.cpp
	M			src/USER-EFF/fix_nvt_sllod_eff.cpp
	M			src/USER-EFF/fix_temp_rescale_eff.cpp
	M			src/USER-EFF/pair_eff_cut.cpp
	M			src/USER-EWALDN/ewald_n.cpp
	M			src/USER-EWALDN/pair_buck_coul.cpp
	M			src/USER-EWALDN/pair_lj_coul.cpp
	M			src/USER-MISC/angle_cosine_shift.cpp
	M			src/USER-MISC/angle_cosine_shift_exp.cpp
	M			src/USER-MISC/bond_harmonic_shift.cpp
	M			src/USER-MISC/bond_harmonic_shift_cut.cpp
	M			src/USER-MISC/compute_ackland_atom.cpp
	M			src/USER-MISC/compute_temp_rotate.cpp
	M			src/USER-MISC/dihedral_cosine_shift_exp.cpp
	M			src/USER-MISC/fix_addtorque.cpp
	M			src/USER-MISC/fix_imd.cpp
	M			src/USER-MISC/fix_smd.cpp
	M			src/USER-MISC/pair_cdeam.cpp
	M			src/USER-MISC/pair_dipole_sf.cpp
	M			src/USER-MISC/pair_edip.cpp
	M			src/USER-MISC/pair_lj_sf.cpp
	M			src/USER-REAXC/fix_qeq_reax.cpp
	M			src/USER-REAXC/pair_reax_c.cpp
	M			src/USER-SPH/atom_vec_meso.cpp
	M			src/USER-SPH/compute_meso_e_atom.cpp
	M			src/USER-SPH/compute_meso_rho_atom.cpp
	M			src/USER-SPH/compute_meso_t_atom.cpp
	M			src/USER-SPH/fix_meso.cpp
	M			src/USER-SPH/fix_meso_stationary.cpp
	M			src/USER-SPH/pair_sph_heatconduction.cpp
	M			src/USER-SPH/pair_sph_idealgas.cpp
	M			src/USER-SPH/pair_sph_lj.cpp
	M			src/USER-SPH/pair_sph_rhosum.cpp
	M			src/USER-SPH/pair_sph_taitwater.cpp
	M			src/USER-SPH/pair_sph_taitwater_morris.cpp
	M			src/XTC/dump_xtc.cpp
	M			src/angle.cpp
	M			src/atom.cpp
	M			src/atom_vec_atomic.cpp
	M			src/atom_vec_charge.cpp
	M			src/atom_vec_ellipsoid.cpp
	M			src/atom_vec_hybrid.cpp
	M			src/atom_vec_sphere.cpp
	M			src/bond.cpp
	M			src/bond_hybrid.cpp
	M			src/change_box.cpp
	M			src/comm.cpp
	M			src/compute.cpp
	M			src/compute_angle_local.cpp
	M			src/compute_atom_molecule.cpp
	M			src/compute_bond_local.cpp
	M			src/compute_centro_atom.cpp
	M			src/compute_cluster_atom.cpp
	M			src/compute_cna_atom.cpp
	M			src/compute_com.cpp
	M			src/compute_com_molecule.cpp
	M			src/compute_coord_atom.cpp
	M			src/compute_dihedral_local.cpp
	M			src/compute_displace_atom.cpp
	M			src/compute_erotate_sphere.cpp
	M			src/compute_group_group.cpp
	M			src/compute_gyration.cpp
	M			src/compute_gyration_molecule.cpp
	M			src/compute_heat_flux.cpp
	M			src/compute_improper_local.cpp
	M			src/compute_ke.cpp
	M			src/compute_ke_atom.cpp
	M			src/compute_msd.cpp
	M			src/compute_msd_molecule.cpp
	M			src/compute_pair.cpp
	M			src/compute_pair_local.cpp
	M			src/compute_pe.cpp
	M			src/compute_pe_atom.cpp
	M			src/compute_pressure.cpp
	M			src/compute_property_atom.cpp
	M			src/compute_property_local.cpp
	M			src/compute_property_molecule.cpp
	M			src/compute_rdf.cpp
	M			src/compute_reduce.cpp
	M			src/compute_reduce_region.cpp
	M			src/compute_slice.cpp
	M			src/compute_stress_atom.cpp
	M			src/compute_temp.cpp
	M			src/compute_temp_com.cpp
	M			src/compute_temp_deform.cpp
	M			src/compute_temp_partial.cpp
	M			src/compute_temp_profile.cpp
	M			src/compute_temp_ramp.cpp
	M			src/compute_temp_region.cpp
	M			src/compute_temp_sphere.cpp
	M			src/compute_ti.cpp
	M			src/create_atoms.cpp
	M			src/create_box.cpp
	M			src/delete_atoms.cpp
	M			src/delete_bonds.cpp
	M			src/dihedral.cpp
	M			src/displace_atoms.cpp
	M			src/displace_box.cpp
	M			src/domain.cpp
	M			src/dump.cpp
	M			src/dump_atom.cpp
	M			src/dump_cfg.cpp
	M			src/dump_custom.cpp
	M			src/dump_dcd.cpp
	M			src/dump_image.cpp
	M			src/dump_local.cpp
	M			src/dump_xyz.cpp
	M			src/error.cpp
	M			src/error.h
	M			src/finish.cpp
	M			src/fix.cpp
	M			src/fix_adapt.cpp
	M			src/fix_addforce.cpp
	M			src/fix_ave_atom.cpp
	M			src/fix_ave_correlate.cpp
	M			src/fix_ave_histo.cpp
	M			src/fix_ave_spatial.cpp
	M			src/fix_ave_time.cpp
	M			src/fix_aveforce.cpp
	M			src/fix_box_relax.cpp
	M			src/fix_deform.cpp
	M			src/fix_deposit.cpp
	M			src/fix_drag.cpp
	M			src/fix_dt_reset.cpp
	M			src/fix_efield.cpp
	M			src/fix_enforce2d.cpp
	M			src/fix_evaporate.cpp
	M			src/fix_external.cpp
	M			src/fix_gravity.cpp
	M			src/fix_heat.cpp
	M			src/fix_indent.cpp
	M			src/fix_langevin.cpp
	M			src/fix_lineforce.cpp
	M			src/fix_momentum.cpp
	M			src/fix_move.cpp
	M			src/fix_nh.cpp
	M			src/fix_nh_sphere.cpp
	M			src/fix_nph.cpp
	M			src/fix_nph_sphere.cpp
	M			src/fix_npt.cpp
	M			src/fix_npt_sphere.cpp
	M			src/fix_nve.cpp
	M			src/fix_nve_limit.cpp
	M			src/fix_nve_noforce.cpp
	M			src/fix_nve_sphere.cpp
	M			src/fix_nvt.cpp
	M			src/fix_nvt_sllod.cpp
	M			src/fix_nvt_sphere.cpp
	M			src/fix_orient_fcc.cpp
	M			src/fix_planeforce.cpp
	M			src/fix_press_berendsen.cpp
	M			src/fix_print.cpp
	M			src/fix_recenter.cpp
	M			src/fix_restrain.cpp
	M			src/fix_rigid.cpp
	M			src/fix_rigid_nvt.cpp
	M			src/fix_setforce.cpp
	M			src/fix_shake.cpp
	M			src/fix_shear_history.cpp
	M			src/fix_spring.cpp
	M			src/fix_spring_rg.cpp
	M			src/fix_spring_self.cpp
	M			src/fix_store_force.cpp
	M			src/fix_store_state.cpp
	M			src/fix_temp_berendsen.cpp
	M			src/fix_temp_rescale.cpp
	M			src/fix_thermal_conductivity.cpp
	M			src/fix_tmd.cpp
	M			src/fix_ttm.cpp
	M			src/fix_viscosity.cpp
	M			src/fix_viscous.cpp
	M			src/fix_wall.cpp
	M			src/fix_wall_harmonic.cpp
	M			src/fix_wall_lj126.cpp
	M			src/fix_wall_lj93.cpp
	M			src/fix_wall_reflect.cpp
	M			src/fix_wall_region.cpp
	M			src/force.cpp
	M			src/group.cpp
	M			src/improper.cpp
	M			src/input.cpp
	M			src/irregular.cpp
	M			src/kspace.cpp
	M			src/lammps.cpp
	M			src/lattice.cpp
	M			src/memory.cpp
	M			src/min.cpp
	M			src/min_cg.cpp
	M			src/min_fire.cpp
	M			src/min_hftn.cpp
	M			src/min_linesearch.cpp
	M			src/min_quickmin.cpp
	M			src/minimize.cpp
	M			src/modify.cpp
	M			src/neigh_bond.cpp
	M			src/neigh_derive.cpp
	M			src/neigh_full.cpp
	M			src/neigh_gran.cpp
	M			src/neigh_half_bin.cpp
	M			src/neigh_half_multi.cpp
	M			src/neigh_half_nsq.cpp
	M			src/neigh_respa.cpp
	M			src/neighbor.cpp
	M			src/output.cpp
	M			src/pair.cpp
	M			src/pair_born.cpp
	M			src/pair_buck.cpp
	M			src/pair_buck_coul_cut.cpp
	M			src/pair_coul_cut.cpp
	M			src/pair_coul_debye.cpp
	M			src/pair_dpd.cpp
	M			src/pair_dpd_tstat.cpp
	M			src/pair_gauss.cpp
	M			src/pair_hybrid.cpp
	M			src/pair_hybrid_overlay.cpp
	M			src/pair_lj96_cut.cpp
	M			src/pair_lj_cubic.cpp
	M			src/pair_lj_cut.cpp
	M			src/pair_lj_cut_coul_cut.cpp
	M			src/pair_lj_cut_coul_debye.cpp
	M			src/pair_lj_expand.cpp
	M			src/pair_lj_gromacs.cpp
	M			src/pair_lj_gromacs_coul_gromacs.cpp
	M			src/pair_lj_smooth.cpp
	M			src/pair_morse.cpp
	M			src/pair_soft.cpp
	M			src/pair_table.cpp
	M			src/pair_yukawa.cpp
	M			src/pointers.h
	M			src/random_mars.cpp
	M			src/random_park.cpp
	M			src/read_data.cpp
	M			src/read_restart.cpp
	M			src/region.cpp
	M			src/region_block.cpp
	M			src/region_cone.cpp
	M			src/region_cylinder.cpp
	M			src/region_intersect.cpp
	M			src/region_plane.cpp
	M			src/region_prism.cpp
	M			src/region_sphere.cpp
	M			src/region_union.cpp
	M			src/replicate.cpp
	M			src/respa.cpp
	M			src/run.cpp
	M			src/set.cpp
	M			src/special.cpp
	M			src/thermo.cpp
	M			src/update.cpp
	M			src/variable.cpp
	M			src/velocity.cpp
	M			src/verlet.cpp
	M			src/version.h
	M			src/write_restart.cpp
	M			tools/msi2lmp/README
	A			tools/msi2lmp/TriclinicModification.pdf
	A			tools/msi2lmp/biosym_frc_files/clayff.frc
	M			tools/msi2lmp/src/GetParameters.c
	M			tools/msi2lmp/src/Makefile
	M			tools/msi2lmp/src/Msi2LMP2.h
	M			tools/msi2lmp/src/ReadCarFile.c
	M			tools/msi2lmp/src/WriteDataFile.c
	M			tools/msi2lmp/src/WriteDataFile05.c
	M			tools/msi2lmp/src/msi2lmp.c