Homec4science
Diffusion lammps c1b6654dbc9c

Merge remote-tracking branch 'lammps-ro/master' into lammps-icms
c1b6654dbc9c
Actions

Authored by Axel Kohlmeyer <akohlmey@gmail.com> on May 10 2013, 10:03.

Description

Merge remote-tracking branch 'lammps-ro/master' into lammps-icms

Resolved Conflicts:
doc/Manual.txt
src/MOLECULE/atom_vec_full.cpp
src/REPLICA/prd.cpp
src/atom_vec_charge.cpp

Details

Committed
Axel Kohlmeyer <akohlmey@gmail.com>May 10 2013, 10:03
Pushed
jungeOct 6 2016, 16:49
Parents
rLAMMPSa698f27d85ef: git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@9851 f3b2605a-c512-4ea7…
rLAMMPS2bee6261d226: Merge remote-tracking branch 'lammps-ro/master' into lammps-icms
Branches
Unknown
Tags
Unknown

Event Timeline

Axel Kohlmeyer <akohlmey@gmail.com> committed rLAMMPSc1b6654dbc9c: Merge remote-tracking branch 'lammps-ro/master' into lammps-icms (authored by Axel Kohlmeyer <akohlmey@gmail.com>).May 10 2013, 10:03

Merged Changes

CommitAuthorDetailsCommitted
a698f27d85efsjplimp
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@9851 f3b2605a-c512-4ea7… 
May 8 2013
f4c29bb4d81bsjplimp
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@9850 f3b2605a-c512-4ea7… 
May 8 2013
07b41bfb6eb8sjplimp
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@9848 f3b2605a-c512-4ea7… 
May 8 2013
7018102f9f78sjplimp
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@9847 f3b2605a-c512-4ea7… 
May 8 2013
bfdbe3ab8764sjplimp
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@9846 f3b2605a-c512-4ea7… 
May 8 2013
c6ca56eff181sjplimp
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@9845 f3b2605a-c512-4ea7… 
May 8 2013
071e06b830c6sjplimp
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@9839 f3b2605a-c512-4ea7… 
May 8 2013
cb8ee74bcc3bsjplimp
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@9838 f3b2605a-c512-4ea7… 
May 8 2013
07071dccd97bsjplimp
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@9837 f3b2605a-c512-4ea7… 
May 8 2013
f4714d9c4122sjplimp
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@9836 f3b2605a-c512-4ea7… 
May 8 2013
7e5fec4f3d3asjplimp
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@9835 f3b2605a-c512-4ea7… 
May 8 2013
0ca04bc6b350sjplimp
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@9834 f3b2605a-c512-4ea7… 
May 8 2013
bca7913e816dsjplimp
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@9833 f3b2605a-c512-4ea7… 
May 8 2013
173f495c3e7asjplimp
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@9832 f3b2605a-c512-4ea7… 
May 8 2013
22fec817cf48sjplimp
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@9831 f3b2605a-c512-4ea7… 
May 8 2013
55b4f3efb89asjplimp
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@9829 f3b2605a-c512-4ea7… 
May 8 2013
9248a54da604sjplimp
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@9828 f3b2605a-c512-4ea7… 
May 8 2013
2ea27db3ddafsjplimp
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@9827 f3b2605a-c512-4ea7… 
May 8 2013
b1c03442afb1sjplimp
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@9825 f3b2605a-c512-4ea7… 
May 8 2013
d1c38bbe2bbcsjplimp
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@9824 f3b2605a-c512-4ea7… 
May 8 2013
def6733a9a4csjplimp
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@9823 f3b2605a-c512-4ea7… 
May 8 2013
9710ebfa4a66sjplimp
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@9810 f3b2605a-c512-4ea7… 
May 7 2013
a4341de03820sjplimp
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@9809 f3b2605a-c512-4ea7… 
May 7 2013
b7da4d691ce9sjplimp
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@9808 f3b2605a-c512-4ea7… 
May 7 2013
03aeb17625d9sjplimp
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@9807 f3b2605a-c512-4ea7… 
May 7 2013

Changes (652)
Show All Changes

Very Large Commit

This commit is very large. Load each file individually.
Path
Mdoc/Manual.html
Mdoc/Manual.txt
Mdoc/Section_commands.html
Mdoc/Section_commands.txt
Mdoc/fix_reax_bonds.html
Mdoc/fix_reax_bonds.txt
Vdoc/{fix_reaxc_species.txt ← fix_species.txt}
Ddoc/fix_species.html
Vdoc/{fix_species.txt → fix_reaxc_species.txt}
Mdoc/if.html
Mdoc/if.txt
Mdoc/kspace_modify.html
Mdoc/kspace_modify.txt
Mdoc/kspace_style.html
Mdoc/kspace_style.txt
Mdoc/pair_reax_c.html
Mdoc/pair_reax_c.txt
Msrc/DIPOLE/atom_vec_dipole.cpp
Msrc/GPU/pppm_gpu.cpp
Msrc/KSPACE/ewald.cpp
Msrc/KSPACE/ewald.h
Msrc/KSPACE/ewald_disp.cpp
Msrc/KSPACE/msm.cpp
Msrc/KSPACE/msm.h
Msrc/KSPACE/msm_cg.cpp
Msrc/KSPACE/pppm.cpp
Msrc/KSPACE/pppm.h
Msrc/KSPACE/pppm_cg.cpp
Msrc/KSPACE/pppm_disp.cpp
Msrc/KSPACE/pppm_disp_tip4p.cpp
Msrc/KSPACE/pppm_old.cpp
Msrc/KSPACE/pppm_tip4p.cpp
Msrc/MOLECULE/atom_vec_full.cpp
Msrc/PERI/atom_vec_peri.cpp
Msrc/REPLICA/prd.cpp
Msrc/USER-AWPMD/atom_vec_wavepacket.cpp
Msrc/USER-CUDA/pppm_cuda.cpp
Msrc/USER-EFF/atom_vec_electron.cpp
Msrc/USER-OMP/ewald_omp.cpp
Msrc/USER-OMP/msm_cg_omp.cpp
Msrc/USER-OMP/msm_omp.cpp
Msrc/USER-OMP/pppm_cg_omp.cpp
Msrc/USER-OMP/pppm_disp_omp.cpp
Msrc/USER-OMP/pppm_disp_tip4p_omp.cpp
Msrc/USER-OMP/pppm_omp.cpp
Msrc/USER-OMP/pppm_tip4p_omp.cpp
Dsrc/USER-REAXC/compute_spec_atom.cpp
Dsrc/USER-REAXC/compute_spec_atom.h
Msrc/USER-REAXC/fix_reaxc_bonds.cpp
Dsrc/USER-REAXC/fix_species.cpp
Dsrc/USER-REAXC/fix_species.h
Msrc/USER-REAXC/pair_reax_c.cpp
Msrc/USER-SPH/atom_vec_meso.cpp
Msrc/atom_vec.cpp
Msrc/atom_vec_charge.cpp
Msrc/atom_vec_ellipsoid.cpp
Msrc/atom_vec_line.cpp
Msrc/atom_vec_sphere.cpp
Msrc/atom_vec_tri.cpp
Msrc/comm.cpp
Msrc/domain.cpp
Msrc/kspace.cpp
Msrc/kspace.h
Msrc/version.h
Msrc/write_data.cpp
Mtools/moltemplate/LICENSE.TXT
Mtools/moltemplate/common/graphene.lt
A(dir)tools/moltemplate/common/images/
Atools/moltemplate/common/images/graphene_unit_cell.jpg
Atools/moltemplate/common/images/ice_rect8_unitcell.png
Atools/moltemplate/common/images/spce_ball_and_stick.jpg
Mtools/moltemplate/common/spce.lt
Atools/moltemplate/common/spce_ice_rect8.lt
Mtools/moltemplate/common/watmw.lt
A(dir)tools/moltemplate/examples/CG_biomolecules/
A(dir)tools/moltemplate/examples/CG_biomolecules/membrane+protein/
Vtools/moltemplate/examples/{CG_biomolecules ← CG_membrane_examples}/membrane+protein/README.TXT
Atools/moltemplate/examples/CG_biomolecules/membrane+protein/README_run.sh
Vtools/moltemplate/examples/{CG_biomolecules/membrane+protein ← CG_membrane_examples/membrane_BranniganPRE2005}/README_setup.sh
Ptools/moltemplate/examples/CG_biomolecules/membrane+protein/README_visualize.txt
Copied from tools/moltemplate/examples/CG_membrane_examples/membrane+protein/README_visualise.txt
A(dir)tools/moltemplate/examples/CG_biomolecules/membrane+protein/images/
Vtools/moltemplate/examples/{CG_biomolecules ← CG_membrane_examples}/membrane+protein/images/4HelixOrig+Lipid2005_t=1290ps_LR.jpg
A(dir)tools/moltemplate/examples/CG_biomolecules/membrane+protein/images/for_visualization/
A(dir)tools/moltemplate/examples/CG_biomolecules/membrane+protein/images/for_visualization/psf_file_created_by_topotools/
Atools/moltemplate/examples/CG_biomolecules/membrane+protein/images/for_visualization/psf_file_created_by_topotools/system.psf
Vtools/moltemplate/examples/{CG_biomolecules ← CG_membrane_examples}/membrane+protein/images/membrane+protein_t=0ps_LR.jpg
Vtools/moltemplate/examples/{CG_biomolecules ← CG_membrane_examples}/membrane+protein/images/membrane+protein_t=0ps_no_pbc_LR.jpg
Vtools/moltemplate/examples/{CG_biomolecules ← CG_membrane_examples}/membrane+protein/images/membrane+protein_t=0ps_top_LR.jpg
Vtools/moltemplate/examples/{CG_biomolecules ← CG_membrane_examples}/membrane+protein/images/membrane+protein_t=5000ps_LR.jpg
A(dir)tools/moltemplate/examples/CG_biomolecules/membrane+protein/moltemplate_files/
Ptools/moltemplate/examples/CG_biomolecules/membrane+protein/moltemplate_files/1beadProtSci2010.lt
Copied from tools/moltemplate/examples/CG_membrane_examples/membrane+protein/moltemplate_files/1beadProtSci2010.lt
Ptools/moltemplate/examples/CG_biomolecules/membrane+protein/moltemplate_files/1beadProtSci2010_variations.lt
Copied from tools/moltemplate/examples/CG_membrane_examples/membrane+protein/moltemplate_files/1beadProtSci2010_variations.lt
Ptools/moltemplate/examples/CG_biomolecules/membrane+protein/moltemplate_files/CGLipidBr2005.lt
Copied from tools/moltemplate/examples/CG_membrane_examples/membrane_BranniganPRE2005/moltemplate_files/CGLipidBr2005.lt
A(dir)tools/moltemplate/examples/CG_biomolecules/membrane+protein/moltemplate_files/calc_table/
Ptools/moltemplate/examples/CG_biomolecules/membrane+protein/moltemplate_files/calc_table/calc_CGLipidTableINTvsINT.py
Copied from tools/moltemplate/examples/CG_membrane_examples/membrane+protein/moltemplate_files/calc_table/calc_CGLipidTableINTvsINT.py
A(dir)tools/moltemplate/examples/CG_biomolecules/membrane+protein/moltemplate_files/calc_table/version_charmm_cutoff/
Ptools/moltemplate/examples/CG_biomolecules/membrane+protein/moltemplate_files/calc_table/version_charmm_cutoff/calc_table.py
Copied from tools/moltemplate/examples/CG_membrane_examples/membrane+protein/moltemplate_files/calc_table/version_charmm_cutoff/calc_table.py
Vtools/moltemplate/examples/{CG_biomolecules ← CG_membrane_examples}/membrane+protein/moltemplate_files/system.lt
Atools/moltemplate/examples/CG_biomolecules/membrane+protein/moltemplate_files/table_int.dat
Atools/moltemplate/examples/CG_biomolecules/membrane+protein/run.in.min
Vtools/moltemplate/examples/{CG_biomolecules ← CG_membrane_examples}/membrane+protein/run.in.npt
Atools/moltemplate/examples/CG_biomolecules/membrane+protein/run.in.nvt
A(dir)tools/moltemplate/examples/CG_biomolecules/membrane_BranniganPRE2005/
Vtools/moltemplate/examples/{CG_biomolecules ← CG_membrane_examples}/membrane_BranniganPRE2005/README.TXT
Atools/moltemplate/examples/CG_biomolecules/membrane_BranniganPRE2005/README_run.sh
Ptools/moltemplate/examples/CG_biomolecules/membrane_BranniganPRE2005/README_setup.sh
Copied from tools/moltemplate/examples/CG_membrane_examples/membrane+protein/README_setup.sh
Ptools/moltemplate/examples/CG_biomolecules/membrane_BranniganPRE2005/README_visualize.txt
Copied from tools/moltemplate/examples/CG_membrane_examples/membrane_BranniganPRE2005/README_visualise.txt
V(dir)tools/moltemplate/examples/{CG_biomolecules/membrane_BranniganPRE2005/images/ ← CG_membrane_examples/membrane_BranniganPRE2005/images}
Vtools/moltemplate/examples/{CG_biomolecules ← CG_membrane_examples}/membrane_BranniganPRE2005/images/DLPC.jpg
Vtools/moltemplate/examples/{CG_biomolecules ← CG_membrane_examples}/membrane_BranniganPRE2005/images/DPPC+DLPC_bilayer32x37_t=0ps_LR.jpg
Vtools/moltemplate/examples/{CG_biomolecules ← CG_membrane_examples}/membrane_BranniganPRE2005/images/DPPC+DLPC_bilayer32x37_t=0ps_no_pbc_LR.jpg
Vtools/moltemplate/examples/{CG_biomolecules ← CG_membrane_examples}/membrane_BranniganPRE2005/images/DPPC+DLPC_bilayer32x37_t=500ps_LR.jpg
Vtools/moltemplate/examples/{CG_biomolecules ← CG_membrane_examples}/membrane_BranniganPRE2005/images/DPPC.jpg
A(dir)tools/moltemplate/examples/CG_biomolecules/membrane_BranniganPRE2005/moltemplate_files/
Vtools/moltemplate/examples/{CG_biomolecules/membrane_BranniganPRE2005/moltemplate_files/CGLipidBr2005Orig.lt ← CG_membrane_examples/membrane+protein/moltemplate_files/CGLipidBr2005.lt}
A(dir)tools/moltemplate/examples/CG_biomolecules/membrane_BranniganPRE2005/moltemplate_files/calc_table/
Vtools/moltemplate/examples/{CG_biomolecules/membrane_BranniganPRE2005/moltemplate_files/calc_table ← CG_membrane_examples/membrane_BranniganPRE2005/moltemplate_files/generate_tables}/calc_table.py
A(dir)tools/moltemplate/examples/CG_biomolecules/membrane_BranniganPRE2005/moltemplate_files/calc_table/version_charmm_cutoff/
Vtools/moltemplate/examples/{CG_biomolecules/membrane_BranniganPRE2005/moltemplate_files/calc_table ← CG_membrane_examples/membrane_BranniganPRE2005/moltemplate_files}/version_charmm_cutoff/calc_table.py
Vtools/moltemplate/examples/{CG_biomolecules ← CG_membrane_examples}/membrane_BranniganPRE2005/moltemplate_files/system.lt
Atools/moltemplate/examples/CG_biomolecules/membrane_BranniganPRE2005/moltemplate_files/table_int.dat
Vtools/moltemplate/examples/{CG_biomolecules ← CG_membrane_examples}/membrane_BranniganPRE2005/run.in.min
Vtools/moltemplate/examples/{CG_biomolecules ← CG_membrane_examples}/membrane_BranniganPRE2005/run.in.npt
Atools/moltemplate/examples/CG_biomolecules/membrane_BranniganPRE2005/run.in.nvt
A(dir)tools/moltemplate/examples/CG_biomolecules/protein_folding_examples/
A(dir)tools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/
Vtools/moltemplate/examples/{CG_biomolecules/protein_folding_examples ← CG_protein_folding_examples}/1bead+chaperone/README.TXT
A(dir)tools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/frustrated/
A(dir)tools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/frustrated+chaperonin/
Vtools/moltemplate/examples/{CG_biomolecules/protein_folding_examples ← CG_protein_folding_examples}/1bead+chaperone/frustrated+chaperonin/README.TXT
Vtools/moltemplate/examples/{CG_biomolecules/protein_folding_examples ← CG_protein_folding_examples}/1bead+chaperone/frustrated+chaperonin/README_run.sh
Vtools/moltemplate/examples/{CG_biomolecules/protein_folding_examples ← CG_protein_folding_examples}/1bead+chaperone/frustrated+chaperonin/README_setup.sh
Vtools/moltemplate/examples/{CG_biomolecules/protein_folding_examples/1bead+chaperone/frustrated+chaperonin/README_visualize.txt ← CG_misc/random_heteropolymer/README_visualise.txt}
V(dir)tools/moltemplate/examples/{CG_biomolecules/protein_folding_examples/1bead+chaperone/frustrated+chaperonin/images/ ← CG_protein_folding_examples/1bead+chaperone/frustrated+chaperonin/images}
V(dir)tools/moltemplate/examples/{CG_biomolecules/protein_folding_examples/1bead+chaperone/frustrated+chaperonin/images/for_visualization/ ← CG_protein_folding_examples/1bead+chaperone/frustrated+chaperonin/images/for_visualization}
V(dir)tools/moltemplate/examples/{CG_biomolecules/protein_folding_examples/1bead+chaperone/frustrated+chaperonin/images/for_visualization/psf_file_created_by_topotools/ ← CG_protein_folding_examples/1bead+chaperone/frustrated+chaperonin/images/for_visualization/psf_file_created_by_topotools}
Vtools/moltemplate/examples/{CG_biomolecules/protein_folding_examples ← CG_protein_folding_examples}/1bead+chaperone/frustrated+chaperonin/images/for_visualization/psf_file_created_by_topotools/system.psf
Vtools/moltemplate/examples/{CG_biomolecules/protein_folding_examples ← CG_protein_folding_examples}/1bead+chaperone/frustrated+chaperonin/images/misfolded+chaperonin_t=0tau_LR.jpg
Vtools/moltemplate/examples/{CG_biomolecules/protein_folding_examples ← CG_protein_folding_examples}/1bead+chaperone/frustrated+chaperonin/images/unfolded+chaperonin_t=508750tau_LR.jpg
V(dir)tools/moltemplate/examples/{CG_biomolecules/protein_folding_examples/1bead+chaperone/frustrated+chaperonin/moltemplate_files/ ← CG_protein_folding_examples/1bead+chaperone/frustrated+chaperonin/moltemplate_files}
Vtools/moltemplate/examples/{CG_biomolecules/protein_folding_examples ← CG_protein_folding_examples}/1bead+chaperone/frustrated+chaperonin/moltemplate_files/1beadFrustrated.lt
Vtools/moltemplate/examples/{CG_biomolecules/protein_folding_examples ← CG_protein_folding_examples}/1bead+chaperone/frustrated+chaperonin/moltemplate_files/1beadFrustrated_variants.lt
Vtools/moltemplate/examples/{CG_biomolecules/protein_folding_examples ← CG_protein_folding_examples}/1bead+chaperone/frustrated+chaperonin/moltemplate_files/chaperonin.lt
V(dir)tools/moltemplate/examples/{CG_biomolecules/protein_folding_examples/1bead+chaperone/frustrated+chaperonin/moltemplate_files/generate_tables/ ← CG_protein_folding_examples/1bead+chaperone/frustrated+chaperonin/moltemplate_files/generate_tables}
Vtools/moltemplate/examples/{CG_biomolecules/protein_folding_examples ← CG_protein_folding_examples}/1bead+chaperone/frustrated+chaperonin/moltemplate_files/generate_tables/calc_chaperone_table.py
Vtools/moltemplate/examples/{CG_biomolecules/protein_folding_examples ← CG_protein_folding_examples}/1bead+chaperone/frustrated+chaperonin/moltemplate_files/generate_tables/calc_dihedral_table.py
Vtools/moltemplate/examples/{CG_biomolecules/protein_folding_examples ← CG_protein_folding_examples}/1bead+chaperone/frustrated+chaperonin/moltemplate_files/system.lt
Vtools/moltemplate/examples/{CG_biomolecules/protein_folding_examples ← CG_protein_folding_examples}/1bead+chaperone/frustrated+chaperonin/moltemplate_files/table_chaperonin_h=0.475.dat
Vtools/moltemplate/examples/{CG_biomolecules/protein_folding_examples ← CG_protein_folding_examples}/1bead+chaperone/frustrated+chaperonin/moltemplate_files/table_chaperonin_h=0.dat
Vtools/moltemplate/examples/{CG_biomolecules/protein_folding_examples ← CG_protein_folding_examples}/1bead+chaperone/frustrated+chaperonin/moltemplate_files/table_dihedral_frustrated.dat
Vtools/moltemplate/examples/{CG_biomolecules/protein_folding_examples ← CG_protein_folding_examples}/1bead+chaperone/frustrated+chaperonin/run.in.min
Vtools/moltemplate/examples/{CG_biomolecules/protein_folding_examples ← CG_protein_folding_examples}/1bead+chaperone/frustrated+chaperonin/run.in.nvt
A(dir)tools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/frustrated+minichaperone/
Vtools/moltemplate/examples/{CG_biomolecules/protein_folding_examples ← CG_protein_folding_examples}/1bead+chaperone/frustrated+minichaperone/README.TXT
Vtools/moltemplate/examples/{CG_biomolecules/protein_folding_examples ← CG_protein_folding_examples}/1bead+chaperone/frustrated+minichaperone/README_run.sh
Vtools/moltemplate/examples/{CG_biomolecules/protein_folding_examples ← CG_protein_folding_examples}/1bead+chaperone/frustrated+minichaperone/README_setup.sh
Vtools/moltemplate/examples/{CG_biomolecules/protein_folding_examples/1bead+chaperone/frustrated+minichaperone/README_visualize.txt ← CG_misc/translocation/README_visualise.txt}
V(dir)tools/moltemplate/examples/{CG_biomolecules/protein_folding_examples/1bead+chaperone/frustrated+minichaperone/images/ ← CG_protein_folding_examples/1bead+chaperone/frustrated+minichaperone/images}
V(dir)tools/moltemplate/examples/{CG_biomolecules/protein_folding_examples/1bead+chaperone/frustrated+minichaperone/images/for_visualization/ ← CG_protein_folding_examples/1bead+chaperone/frustrated+minichaperone/images/for_visualization}
V(dir)tools/moltemplate/examples/{CG_biomolecules/protein_folding_examples/1bead+chaperone/frustrated+minichaperone/images/for_visualization/psf_file_created_by_topotools/ ← CG_protein_folding_examples/1bead+chaperone/frustrated+minichaperone/images/for_visualization/psf_file_created_by_topotools}
Vtools/moltemplate/examples/{CG_biomolecules/protein_folding_examples ← CG_protein_folding_examples}/1bead+chaperone/frustrated+minichaperone/images/for_visualization/psf_file_created_by_topotools/system.psf
Vtools/moltemplate/examples/{CG_biomolecules/protein_folding_examples ← CG_protein_folding_examples}/1bead+chaperone/frustrated+minichaperone/images/protein2x2x2+minichaperones2x2x2_t=0tau_LR.jpg
Vtools/moltemplate/examples/{CG_biomolecules/protein_folding_examples ← CG_protein_folding_examples}/1bead+chaperone/frustrated+minichaperone/images/protein2x2x2+minichaperones2x2x2_t=67500tau_LR.jpg
A(dir)tools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/frustrated+minichaperone/moltemplate_files/
Vtools/moltemplate/examples/{CG_biomolecules/protein_folding_examples ← CG_protein_folding_examples}/1bead+chaperone/frustrated+minichaperone/moltemplate_files/1beadFrustrated.lt
Vtools/moltemplate/examples/{CG_biomolecules/protein_folding_examples ← CG_protein_folding_examples}/1bead+chaperone/frustrated+minichaperone/moltemplate_files/1beadFrustrated_variants.lt
V(dir)tools/moltemplate/examples/{CG_biomolecules/protein_folding_examples/1bead+chaperone/frustrated+minichaperone/moltemplate_files/generate_tables/ ← CG_protein_folding_examples/1bead+chaperone/frustrated+minichaperone/moltemplate_files/generate_tables}
Vtools/moltemplate/examples/{CG_biomolecules/protein_folding_examples ← CG_protein_folding_examples}/1bead+chaperone/frustrated+minichaperone/moltemplate_files/generate_tables/calc_chaperone_table.py
Vtools/moltemplate/examples/{CG_biomolecules/protein_folding_examples ← CG_protein_folding_examples}/1bead+chaperone/frustrated+minichaperone/moltemplate_files/generate_tables/calc_dihedral_table.py
Vtools/moltemplate/examples/{CG_biomolecules/protein_folding_examples ← CG_protein_folding_examples}/1bead+chaperone/frustrated+minichaperone/moltemplate_files/minichaperone.lt
Vtools/moltemplate/examples/{CG_biomolecules/protein_folding_examples ← CG_protein_folding_examples}/1bead+chaperone/frustrated+minichaperone/moltemplate_files/system.lt
Vtools/moltemplate/examples/{CG_biomolecules/protein_folding_examples ← CG_protein_folding_examples}/1bead+chaperone/frustrated+minichaperone/moltemplate_files/table_dihedral_frustrated.dat
Vtools/moltemplate/examples/{CG_biomolecules/protein_folding_examples ← CG_protein_folding_examples}/1bead+chaperone/frustrated+minichaperone/moltemplate_files/table_minichaperone_h=0.6.dat
Vtools/moltemplate/examples/{CG_biomolecules/protein_folding_examples ← CG_protein_folding_examples}/1bead+chaperone/frustrated+minichaperone/moltemplate_files/table_minichaperone_h=0.dat
Vtools/moltemplate/examples/{CG_biomolecules/protein_folding_examples ← CG_protein_folding_examples}/1bead+chaperone/frustrated+minichaperone/run.in.min
Vtools/moltemplate/examples/{CG_biomolecules/protein_folding_examples ← CG_protein_folding_examples}/1bead+chaperone/frustrated+minichaperone/run.in.nvt
Vtools/moltemplate/examples/{CG_biomolecules/protein_folding_examples ← CG_protein_folding_examples}/1bead+chaperone/frustrated/README.TXT
Vtools/moltemplate/examples/{CG_biomolecules/protein_folding_examples ← CG_protein_folding_examples}/1bead+chaperone/frustrated/README_run.sh
Vtools/moltemplate/examples/{CG_biomolecules/protein_folding_examples ← CG_protein_folding_examples}/1bead+chaperone/frustrated/README_setup.sh
Vtools/moltemplate/examples/{CG_biomolecules/protein_folding_examples/1bead+chaperone/frustrated/README_visualize.txt ← CG_protein_folding_examples/1bead+chaperone/frustrated+chaperonin/README_visualise.txt}
V(dir)tools/moltemplate/examples/{CG_biomolecules/protein_folding_examples/1bead+chaperone/frustrated/images/ ← CG_protein_folding_examples/1bead+chaperone/frustrated/images}
V(dir)tools/moltemplate/examples/{CG_biomolecules/protein_folding_examples/1bead+chaperone/frustrated/images/for_visualization/ ← CG_protein_folding_examples/1bead+chaperone/frustrated/images/for_visualization}
V(dir)tools/moltemplate/examples/{CG_biomolecules/protein_folding_examples/1bead+chaperone/frustrated/images/for_visualization/psf_file_created_by_topotools/ ← CG_protein_folding_examples/1bead+chaperone/frustrated/images/for_visualization/psf_file_created_by_topotools}
Vtools/moltemplate/examples/{CG_biomolecules/protein_folding_examples ← CG_protein_folding_examples}/1bead+chaperone/frustrated/images/for_visualization/psf_file_created_by_topotools/system.psf
Vtools/moltemplate/examples/{CG_biomolecules/protein_folding_examples ← CG_protein_folding_examples}/1bead+chaperone/frustrated/images/initial_conformation_t=0tau.jpg
Vtools/moltemplate/examples/{CG_biomolecules/protein_folding_examples ← CG_protein_folding_examples}/1bead+chaperone/frustrated/images/misfolded_conformation_t=1250tau.jpg
V(dir)tools/moltemplate/examples/{CG_biomolecules/protein_folding_examples/1bead+chaperone/frustrated/moltemplate_files/ ← CG_protein_folding_examples/1bead+chaperone/frustrated/moltemplate_files}
Vtools/moltemplate/examples/{CG_biomolecules/protein_folding_examples ← CG_protein_folding_examples}/1bead+chaperone/frustrated/moltemplate_files/1beadFrustrated.lt
Vtools/moltemplate/examples/{CG_biomolecules/protein_folding_examples ← CG_protein_folding_examples}/1bead+chaperone/frustrated/moltemplate_files/1beadFrustrated_variants.lt
V(dir)tools/moltemplate/examples/{CG_biomolecules/protein_folding_examples/1bead+chaperone/frustrated/moltemplate_files/generate_tables/ ← CG_protein_folding_examples/1bead+chaperone/frustrated/moltemplate_files/generate_tables}
Vtools/moltemplate/examples/{CG_biomolecules/protein_folding_examples ← CG_protein_folding_examples}/1bead+chaperone/frustrated/moltemplate_files/generate_tables/calc_dihedral_table.py
Vtools/moltemplate/examples/{CG_biomolecules/protein_folding_examples ← CG_protein_folding_examples}/1bead+chaperone/frustrated/moltemplate_files/system.lt
Vtools/moltemplate/examples/{CG_biomolecules/protein_folding_examples ← CG_protein_folding_examples}/1bead+chaperone/frustrated/moltemplate_files/table_dihedral_frustrated.dat
Vtools/moltemplate/examples/{CG_biomolecules/protein_folding_examples/1bead+chaperone/frustrated ← CG_membrane_examples/membrane+protein}/run.in.min
Vtools/moltemplate/examples/{CG_biomolecules/protein_folding_examples ← CG_protein_folding_examples}/1bead+chaperone/frustrated/run_short_sim.in.nvt
A(dir)tools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/unfrustrated/
A(dir)tools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/unfrustrated+chaperonin/
Vtools/moltemplate/examples/{CG_biomolecules/protein_folding_examples ← CG_protein_folding_examples}/1bead+chaperone/unfrustrated+chaperonin/README.TXT
Vtools/moltemplate/examples/{CG_biomolecules/protein_folding_examples ← CG_protein_folding_examples}/1bead+chaperone/unfrustrated+chaperonin/README_run.sh
Vtools/moltemplate/examples/{CG_biomolecules/protein_folding_examples ← CG_protein_folding_examples}/1bead+chaperone/unfrustrated+chaperonin/README_setup.sh
Vtools/moltemplate/examples/{CG_biomolecules/protein_folding_examples/1bead+chaperone/unfrustrated+chaperonin/README_visualize.txt ← CG_protein_folding_examples/1bead+chaperone/frustrated+minichaperone/README_visualise.txt}
V(dir)tools/moltemplate/examples/{CG_biomolecules/protein_folding_examples/1bead+chaperone/unfrustrated+chaperonin/images/ ← CG_protein_folding_examples/1bead+chaperone/unfrustrated+chaperonin/images}
V(dir)tools/moltemplate/examples/{CG_biomolecules/protein_folding_examples/1bead+chaperone/unfrustrated+chaperonin/images/for_visualization/ ← CG_protein_folding_examples/1bead+chaperone/unfrustrated+chaperonin/images/for_visualization}
V(dir)tools/moltemplate/examples/{CG_biomolecules/protein_folding_examples/1bead+chaperone/unfrustrated+chaperonin/images/for_visualization/psf_file_created_by_topotools/ ← CG_protein_folding_examples/1bead+chaperone/unfrustrated+chaperonin/images/for_visualization/psf_file_created_by_topotools}
Vtools/moltemplate/examples/{CG_biomolecules/protein_folding_examples ← CG_protein_folding_examples}/1bead+chaperone/unfrustrated+chaperonin/images/for_visualization/psf_file_created_by_topotools/system.psf
Vtools/moltemplate/examples/{CG_biomolecules/protein_folding_examples ← CG_protein_folding_examples}/1bead+chaperone/unfrustrated+chaperonin/images/unfrustrated+chaperonin_t=0tau_LR.jpg
Vtools/moltemplate/examples/{CG_biomolecules/protein_folding_examples ← CG_protein_folding_examples}/1bead+chaperone/unfrustrated+chaperonin/images/unfrustrated+chaperonin_t=105tau_LR.jpg
V(dir)tools/moltemplate/examples/{CG_biomolecules/protein_folding_examples/1bead+chaperone/unfrustrated+chaperonin/moltemplate_files/ ← CG_protein_folding_examples/1bead+chaperone/unfrustrated+chaperonin/moltemplate_files}
Vtools/moltemplate/examples/{CG_biomolecules/protein_folding_examples ← CG_protein_folding_examples}/1bead+chaperone/unfrustrated+chaperonin/moltemplate_files/1beadUnfrustrated.lt
Vtools/moltemplate/examples/{CG_biomolecules/protein_folding_examples ← CG_protein_folding_examples}/1bead+chaperone/unfrustrated+chaperonin/moltemplate_files/1beadUnfrustrated_variants.lt
Vtools/moltemplate/examples/{CG_biomolecules/protein_folding_examples ← CG_protein_folding_examples}/1bead+chaperone/unfrustrated+chaperonin/moltemplate_files/chaperonin.lt
V(dir)tools/moltemplate/examples/{CG_biomolecules/protein_folding_examples/1bead+chaperone/unfrustrated+chaperonin/moltemplate_files/generate_tables/ ← CG_protein_folding_examples/1bead+chaperone/unfrustrated+chaperonin/moltemplate_files/generate_tables}
Vtools/moltemplate/examples/{CG_biomolecules/protein_folding_examples ← CG_protein_folding_examples}/1bead+chaperone/unfrustrated+chaperonin/moltemplate_files/generate_tables/calc_chaperone_table.py
Vtools/moltemplate/examples/{CG_biomolecules/protein_folding_examples ← CG_protein_folding_examples}/1bead+chaperone/unfrustrated+chaperonin/moltemplate_files/system.lt
Vtools/moltemplate/examples/{CG_biomolecules/protein_folding_examples ← CG_protein_folding_examples}/1bead+chaperone/unfrustrated+chaperonin/moltemplate_files/table_chaperonin_h=0.475.dat
Vtools/moltemplate/examples/{CG_biomolecules/protein_folding_examples ← CG_protein_folding_examples}/1bead+chaperone/unfrustrated+chaperonin/moltemplate_files/table_chaperonin_h=0.dat
Vtools/moltemplate/examples/{CG_biomolecules/protein_folding_examples/1bead+chaperone/unfrustrated+chaperonin ← CG_protein_folding_examples/1bead+chaperone/frustrated}/run.in.min
Vtools/moltemplate/examples/{CG_biomolecules/protein_folding_examples ← CG_protein_folding_examples}/1bead+chaperone/unfrustrated+chaperonin/run.in.nvt
Vtools/moltemplate/examples/{CG_biomolecules/protein_folding_examples ← CG_protein_folding_examples}/1bead+chaperone/unfrustrated/README.TXT
Vtools/moltemplate/examples/{CG_biomolecules/protein_folding_examples ← CG_protein_folding_examples}/1bead+chaperone/unfrustrated/README_run.sh
Vtools/moltemplate/examples/{CG_biomolecules/protein_folding_examples ← CG_protein_folding_examples}/1bead+chaperone/unfrustrated/README_setup.sh
Vtools/moltemplate/examples/{CG_biomolecules/protein_folding_examples/1bead+chaperone/unfrustrated/README_visualize.txt ← CG_protein_folding_examples/1bead+chaperone/frustrated/README_visualise.txt}
V(dir)tools/moltemplate/examples/{CG_biomolecules/protein_folding_examples/1bead+chaperone/unfrustrated/images/ ← CG_protein_folding_examples/1bead+chaperone/unfrustrated/images}
V(dir)tools/moltemplate/examples/{CG_biomolecules/protein_folding_examples/1bead+chaperone/unfrustrated/images/for_visualization/ ← CG_protein_folding_examples/1bead+chaperone/unfrustrated/images/for_visualization}
V(dir)tools/moltemplate/examples/{CG_biomolecules/protein_folding_examples/1bead+chaperone/unfrustrated/images/for_visualization/psf_file_created_by_topotools/ ← CG_protein_folding_examples/1bead+chaperone/unfrustrated/images/for_visualization/psf_file_created_by_topotools}
Vtools/moltemplate/examples/{CG_biomolecules/protein_folding_examples ← CG_protein_folding_examples}/1bead+chaperone/unfrustrated/images/for_visualization/psf_file_created_by_topotools/system.psf
Vtools/moltemplate/examples/{CG_biomolecules/protein_folding_examples ← CG_protein_folding_examples}/1bead+chaperone/unfrustrated/images/unfrustrated_t=0tau_LR.jpg
Vtools/moltemplate/examples/{CG_biomolecules/protein_folding_examples ← CG_protein_folding_examples}/1bead+chaperone/unfrustrated/images/unfrustrated_t=200tau_LR.jpg
V(dir)tools/moltemplate/examples/{CG_biomolecules/protein_folding_examples/1bead+chaperone/unfrustrated/moltemplate_files/ ← CG_protein_folding_examples/1bead+chaperone/unfrustrated/moltemplate_files}
Vtools/moltemplate/examples/{CG_biomolecules/protein_folding_examples ← CG_protein_folding_examples}/1bead+chaperone/unfrustrated/moltemplate_files/1beadUnfrustrated.lt
Vtools/moltemplate/examples/{CG_biomolecules/protein_folding_examples ← CG_protein_folding_examples}/1bead+chaperone/unfrustrated/moltemplate_files/1beadUnfrustrated_variants.lt
Vtools/moltemplate/examples/{CG_biomolecules/protein_folding_examples ← CG_protein_folding_examples}/1bead+chaperone/unfrustrated/moltemplate_files/system.lt
Vtools/moltemplate/examples/{CG_biomolecules/protein_folding_examples/1bead+chaperone/unfrustrated ← CG_protein_folding_examples/1bead+chaperone/unfrustrated+chaperonin}/run.in.min
Vtools/moltemplate/examples/{CG_biomolecules/protein_folding_examples ← CG_protein_folding_examples}/1bead+chaperone/unfrustrated/run.in.nvt
A(dir)tools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1beadProtSci2010/
Vtools/moltemplate/examples/{CG_biomolecules/protein_folding_examples ← CG_protein_folding_examples}/1beadProtSci2010/README.TXT
Vtools/moltemplate/examples/{CG_biomolecules/protein_folding_examples ← CG_protein_folding_examples}/1beadProtSci2010/README_run.sh
Vtools/moltemplate/examples/{CG_biomolecules/protein_folding_examples ← CG_protein_folding_examples}/1beadProtSci2010/README_setup.sh
Vtools/moltemplate/examples/{CG_biomolecules/protein_folding_examples/1beadProtSci2010/README_visualize.txt ← CG_protein_folding_examples/1bead+chaperone/unfrustrated+chaperonin/README_visualise.txt}
V(dir)tools/moltemplate/examples/{CG_biomolecules/protein_folding_examples/1beadProtSci2010/images/ ← CG_protein_folding_examples/1beadProtSci2010/images}
Vtools/moltemplate/examples/{CG_biomolecules/protein_folding_examples ← CG_protein_folding_examples}/1beadProtSci2010/images/4HelixBundle_t=0.jpg
Vtools/moltemplate/examples/{CG_biomolecules/protein_folding_examples ← CG_protein_folding_examples}/1beadProtSci2010/images/4SheetBundle_t=0.jpg
V(dir)tools/moltemplate/examples/{CG_biomolecules/protein_folding_examples/1beadProtSci2010/images/for_visualization/ ← CG_protein_folding_examples/1beadProtSci2010/images/for_visualization}
V(dir)tools/moltemplate/examples/{CG_biomolecules/protein_folding_examples/1beadProtSci2010/images/for_visualization/psf_file_created_by_topotools/ ← CG_protein_folding_examples/1beadProtSci2010/images/for_visualization/psf_file_created_by_topotools}
Vtools/moltemplate/examples/{CG_biomolecules/protein_folding_examples ← CG_protein_folding_examples}/1beadProtSci2010/images/for_visualization/psf_file_created_by_topotools/system.psf
A(dir)tools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1beadProtSci2010/moltemplate_files/
Vtools/moltemplate/examples/{CG_biomolecules/protein_folding_examples ← CG_protein_folding_examples}/1beadProtSci2010/moltemplate_files/1beadProtSci2010.lt
Atools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1beadProtSci2010/moltemplate_files/README.sh
A(dir)tools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1beadProtSci2010/moltemplate_files/other_implementations/
Atools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1beadProtSci2010/moltemplate_files/other_implementations/README.TXT
A(dir)tools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1beadProtSci2010/moltemplate_files/other_implementations/charmm/
Vtools/moltemplate/examples/{CG_biomolecules/protein_folding_examples/1beadProtSci2010/moltemplate_files/other_implementations/charmm/1beadProtSci2010.lt ← CG_protein_folding_examples/1beadProtSci2010/moltemplate_files/versions_with_comments/1beadProtSci2010_charmm.lt}
A(dir)tools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1beadProtSci2010/moltemplate_files/other_implementations/class2/
Vtools/moltemplate/examples/{CG_biomolecules/protein_folding_examples/1beadProtSci2010/moltemplate_files/other_implementations/class2 ← CG_protein_folding_examples/1beadProtSci2010/moltemplate_files/versions_with_comments}/1beadProtSci2010.lt
Vtools/moltemplate/examples/{CG_biomolecules/protein_folding_examples ← CG_protein_folding_examples}/1beadProtSci2010/moltemplate_files/system.lt
Vtools/moltemplate/examples/{CG_biomolecules/protein_folding_examples/1beadProtSci2010 ← CG_protein_folding_examples/1bead+chaperone/unfrustrated}/run.in.min
Vtools/moltemplate/examples/{CG_biomolecules/protein_folding_examples ← CG_protein_folding_examples}/1beadProtSci2010/run.in.nvt
A(dir)tools/moltemplate/examples/CG_biomolecules/vesicle_PACKMOL/
Atools/moltemplate/examples/CG_biomolecules/vesicle_PACKMOL/README.TXT
Atools/moltemplate/examples/CG_biomolecules/vesicle_PACKMOL/README_run.sh
Atools/moltemplate/examples/CG_biomolecules/vesicle_PACKMOL/README_setup.sh
Vtools/moltemplate/examples/{CG_biomolecules/vesicle_PACKMOL/README_visualize.txt ← CG_protein_folding_examples/1bead+chaperone/unfrustrated/README_visualise.txt}
A(dir)tools/moltemplate/examples/CG_biomolecules/vesicle_PACKMOL/images/
Atools/moltemplate/examples/CG_biomolecules/vesicle_PACKMOL/images/vesicle_hole_blackbk_LR.jpg
A(dir)tools/moltemplate/examples/CG_biomolecules/vesicle_PACKMOL/moltemplate_files/
Vtools/moltemplate/examples/{CG_biomolecules/vesicle_PACKMOL ← CG_membrane_examples/membrane+protein}/moltemplate_files/1beadProtSci2010.lt
Vtools/moltemplate/examples/{CG_biomolecules/vesicle_PACKMOL ← CG_membrane_examples/membrane+protein}/moltemplate_files/1beadProtSci2010_variations.lt
Vtools/moltemplate/examples/{CG_biomolecules/vesicle_PACKMOL ← CG_membrane_examples/membrane_BranniganPRE2005}/moltemplate_files/CGLipidBr2005.lt
Atools/moltemplate/examples/CG_biomolecules/vesicle_PACKMOL/moltemplate_files/README.sh
A(dir)tools/moltemplate/examples/CG_biomolecules/vesicle_PACKMOL/moltemplate_files/calc_table/
Vtools/moltemplate/examples/{CG_biomolecules/vesicle_PACKMOL ← CG_membrane_examples/membrane+protein}/moltemplate_files/calc_table/calc_CGLipidTableINTvsINT.py
A(dir)tools/moltemplate/examples/CG_biomolecules/vesicle_PACKMOL/moltemplate_files/calc_table/version_charmm_cutoff/
Vtools/moltemplate/examples/{CG_biomolecules/vesicle_PACKMOL ← CG_membrane_examples/membrane+protein}/moltemplate_files/calc_table/version_charmm_cutoff/calc_table.py
Atools/moltemplate/examples/CG_biomolecules/vesicle_PACKMOL/moltemplate_files/system.lt
Atools/moltemplate/examples/CG_biomolecules/vesicle_PACKMOL/moltemplate_files/table_int.dat
A(dir)tools/moltemplate/examples/CG_biomolecules/vesicle_PACKMOL/packmol_files/
Atools/moltemplate/examples/CG_biomolecules/vesicle_PACKMOL/packmol_files/DLPC.xyz
Atools/moltemplate/examples/CG_biomolecules/vesicle_PACKMOL/packmol_files/DPPC.xyz
Atools/moltemplate/examples/CG_biomolecules/vesicle_PACKMOL/packmol_files/README.sh
Atools/moltemplate/examples/CG_biomolecules/vesicle_PACKMOL/packmol_files/protein.xyz
Atools/moltemplate/examples/CG_biomolecules/vesicle_PACKMOL/packmol_files/step1_proteins.inp
Atools/moltemplate/examples/CG_biomolecules/vesicle_PACKMOL/packmol_files/step2_innerlayer.inp
Atools/moltemplate/examples/CG_biomolecules/vesicle_PACKMOL/packmol_files/step3_outerlayer.inp
Atools/moltemplate/examples/CG_biomolecules/vesicle_PACKMOL/run.in.min
Atools/moltemplate/examples/CG_biomolecules/vesicle_PACKMOL/run.in.nvt
Dtools/moltemplate/examples/CG_membrane_examples
Dtools/moltemplate/examples/CG_membrane_examples/membrane+protein
Vtools/moltemplate/examples/{CG_membrane_examples → CG_biomolecules}/membrane+protein/README.TXT
Dtools/moltemplate/examples/CG_membrane_examples/membrane+protein/README_run.sh
Ptools/moltemplate/examples/CG_membrane_examples/membrane+protein/README_setup.sh
Deleted after being copied to multiple locations:
tools/moltemplate/examples/CG_biomolecules/membrane_BranniganPRE2005/README_setup.sh
tools/moltemplate/examples/all_atom_examples/aluminum_crystal_strain/README_setup.sh
tools/moltemplate/examples/all_atom_examples/ice_crystal/README_setup.sh
tools/moltemplate/examples/silly/sierpinski/README_setup.sh
Ptools/moltemplate/examples/CG_membrane_examples/membrane+protein/README_visualise.txt
Deleted after being copied to multiple locations:
tools/moltemplate/examples/CG_biomolecules/membrane+protein/README_visualize.txt
tools/moltemplate/examples/all_atom_examples/waterSPCE+Na+Cl/README_visualize.txt
tools/moltemplate/examples/silly/sierpinski/README_visualize.txt
Dtools/moltemplate/examples/CG_membrane_examples/membrane+protein/images
Vtools/moltemplate/examples/{CG_membrane_examples → CG_biomolecules}/membrane+protein/images/4HelixOrig+Lipid2005_t=1290ps_LR.jpg
Dtools/moltemplate/examples/CG_membrane_examples/membrane+protein/images/for_visualization
Dtools/moltemplate/examples/CG_membrane_examples/membrane+protein/images/for_visualization/psf_file_created_by_topotools
Dtools/moltemplate/examples/CG_membrane_examples/membrane+protein/images/for_visualization/psf_file_created_by_topotools/system.psf
Vtools/moltemplate/examples/{CG_membrane_examples → CG_biomolecules}/membrane+protein/images/membrane+protein_t=0ps_LR.jpg
Vtools/moltemplate/examples/{CG_membrane_examples → CG_biomolecules}/membrane+protein/images/membrane+protein_t=0ps_no_pbc_LR.jpg
Vtools/moltemplate/examples/{CG_membrane_examples → CG_biomolecules}/membrane+protein/images/membrane+protein_t=0ps_top_LR.jpg
Vtools/moltemplate/examples/{CG_membrane_examples → CG_biomolecules}/membrane+protein/images/membrane+protein_t=5000ps_LR.jpg
Dtools/moltemplate/examples/CG_membrane_examples/membrane+protein/moltemplate_files
Ptools/moltemplate/examples/CG_membrane_examples/membrane+protein/moltemplate_files/1beadProtSci2010.lt
Deleted after being copied to multiple locations:
tools/moltemplate/examples/CG_biomolecules/membrane+protein/moltemplate_files/1beadProtSci2010.lt
tools/moltemplate/examples/CG_biomolecules/vesicle_PACKMOL/moltemplate_files/1beadProtSci2010.lt
Ptools/moltemplate/examples/CG_membrane_examples/membrane+protein/moltemplate_files/1beadProtSci2010_variations.lt
Deleted after being copied to multiple locations:
tools/moltemplate/examples/CG_biomolecules/membrane+protein/moltemplate_files/1beadProtSci2010_variations.lt
tools/moltemplate/examples/CG_biomolecules/vesicle_PACKMOL/moltemplate_files/1beadProtSci2010_variations.lt
Vtools/moltemplate/examples/{CG_membrane_examples/membrane+protein/moltemplate_files/CGLipidBr2005.lt → CG_biomolecules/membrane_BranniganPRE2005/moltemplate_files/CGLipidBr2005Orig.lt}
Dtools/moltemplate/examples/CG_membrane_examples/membrane+protein/moltemplate_files/calc_table
Ptools/moltemplate/examples/CG_membrane_examples/membrane+protein/moltemplate_files/calc_table/calc_CGLipidTableINTvsINT.py
Deleted after being copied to multiple locations:
tools/moltemplate/examples/CG_biomolecules/membrane+protein/moltemplate_files/calc_table/calc_CGLipidTableINTvsINT.py
tools/moltemplate/examples/CG_biomolecules/vesicle_PACKMOL/moltemplate_files/calc_table/calc_CGLipidTableINTvsINT.py
Dtools/moltemplate/examples/CG_membrane_examples/membrane+protein/moltemplate_files/calc_table/version_charmm_cutoff
Ptools/moltemplate/examples/CG_membrane_examples/membrane+protein/moltemplate_files/calc_table/version_charmm_cutoff/calc_table.py
Deleted after being copied to multiple locations:
tools/moltemplate/examples/CG_biomolecules/membrane+protein/moltemplate_files/calc_table/version_charmm_cutoff/calc_table.py
tools/moltemplate/examples/CG_biomolecules/vesicle_PACKMOL/moltemplate_files/calc_table/version_charmm_cutoff/calc_table.py
Vtools/moltemplate/examples/{CG_membrane_examples → CG_biomolecules}/membrane+protein/moltemplate_files/system.lt
Dtools/moltemplate/examples/CG_membrane_examples/membrane+protein/moltemplate_files/table_int.dat
Vtools/moltemplate/examples/{CG_membrane_examples/membrane+protein → CG_biomolecules/protein_folding_examples/1bead+chaperone/frustrated}/run.in.min
Vtools/moltemplate/examples/{CG_membrane_examples → CG_biomolecules}/membrane+protein/run.in.npt
Dtools/moltemplate/examples/CG_membrane_examples/membrane+protein/run.in.nvt
Dtools/moltemplate/examples/CG_membrane_examples/membrane_BranniganPRE2005
Vtools/moltemplate/examples/{CG_membrane_examples → CG_biomolecules}/membrane_BranniganPRE2005/README.TXT
Dtools/moltemplate/examples/CG_membrane_examples/membrane_BranniganPRE2005/README_run.sh
Vtools/moltemplate/examples/{CG_membrane_examples/membrane_BranniganPRE2005 → CG_biomolecules/membrane+protein}/README_setup.sh
Ptools/moltemplate/examples/CG_membrane_examples/membrane_BranniganPRE2005/README_visualise.txt
Deleted after being copied to multiple locations:
tools/moltemplate/examples/CG_biomolecules/membrane_BranniganPRE2005/README_visualize.txt
tools/moltemplate/examples/all_atom_examples/ice_crystal/README_visualize.txt
V(dir)tools/moltemplate/examples/{CG_membrane_examples/membrane_BranniganPRE2005/images/ → CG_biomolecules/membrane_BranniganPRE2005/images}
Vtools/moltemplate/examples/{CG_membrane_examples → CG_biomolecules}/membrane_BranniganPRE2005/images/DLPC.jpg
Vtools/moltemplate/examples/{CG_membrane_examples → CG_biomolecules}/membrane_BranniganPRE2005/images/DPPC+DLPC_bilayer32x37_t=0ps_LR.jpg
Vtools/moltemplate/examples/{CG_membrane_examples → CG_biomolecules}/membrane_BranniganPRE2005/images/DPPC+DLPC_bilayer32x37_t=0ps_no_pbc_LR.jpg
Vtools/moltemplate/examples/{CG_membrane_examples → CG_biomolecules}/membrane_BranniganPRE2005/images/DPPC+DLPC_bilayer32x37_t=500ps_LR.jpg
Vtools/moltemplate/examples/{CG_membrane_examples → CG_biomolecules}/membrane_BranniganPRE2005/images/DPPC.jpg
Dtools/moltemplate/examples/CG_membrane_examples/membrane_BranniganPRE2005/moltemplate_files
Ptools/moltemplate/examples/CG_membrane_examples/membrane_BranniganPRE2005/moltemplate_files/CGLipidBr2005.lt
Deleted after being copied to multiple locations:
tools/moltemplate/examples/CG_biomolecules/membrane+protein/moltemplate_files/CGLipidBr2005.lt
tools/moltemplate/examples/CG_biomolecules/vesicle_PACKMOL/moltemplate_files/CGLipidBr2005.lt
Dtools/moltemplate/examples/CG_membrane_examples/membrane_BranniganPRE2005/moltemplate_files/generate_tables
Vtools/moltemplate/examples/{CG_membrane_examples/membrane_BranniganPRE2005/moltemplate_files/generate_tables → CG_biomolecules/membrane_BranniganPRE2005/moltemplate_files/calc_table}/calc_table.py
Vtools/moltemplate/examples/{CG_membrane_examples → CG_biomolecules}/membrane_BranniganPRE2005/moltemplate_files/system.lt
Dtools/moltemplate/examples/CG_membrane_examples/membrane_BranniganPRE2005/moltemplate_files/table_int.dat
Dtools/moltemplate/examples/CG_membrane_examples/membrane_BranniganPRE2005/moltemplate_files/version_charmm_cutoff
Vtools/moltemplate/examples/{CG_membrane_examples/membrane_BranniganPRE2005/moltemplate_files → CG_biomolecules/membrane_BranniganPRE2005/moltemplate_files/calc_table}/version_charmm_cutoff/calc_table.py
Dtools/moltemplate/examples/CG_membrane_examples/membrane_BranniganPRE2005/moltemplate_files/version_charmm_cutoff/table_int.dat
Vtools/moltemplate/examples/{CG_membrane_examples → CG_biomolecules}/membrane_BranniganPRE2005/run.in.min
Vtools/moltemplate/examples/{CG_membrane_examples → CG_biomolecules}/membrane_BranniganPRE2005/run.in.npt
Dtools/moltemplate/examples/CG_membrane_examples/membrane_BranniganPRE2005/run.in.nvt
Mtools/moltemplate/examples/CG_misc/2bead_heteropolymer/README_run.sh
Vtools/moltemplate/examples/CG_misc/2bead_heteropolymer/{README_visualise.txt → README_visualize.txt}
Vtools/moltemplate/examples/CG_misc/2bead_heteropolymer/{README_visualize.txt ← README_visualise.txt}
Dtools/moltemplate/examples/CG_misc/2bead_heteropolymer/run.in.min
Mtools/moltemplate/examples/CG_misc/random_heteropolymer/README_run.sh
Vtools/moltemplate/examples/{CG_misc/random_heteropolymer/README_visualise.txt → CG_biomolecules/protein_folding_examples/1bead+chaperone/frustrated+chaperonin/README_visualize.txt}
Vtools/moltemplate/examples/{CG_misc/random_heteropolymer/README_visualize.txt ← CG_protein_folding_examples/1beadProtSci2010/README_visualise.txt}
Mtools/moltemplate/examples/CG_misc/random_heteropolymer/moltemplate_files/monomers.lt
Mtools/moltemplate/examples/CG_misc/translocation/README_run.sh
Vtools/moltemplate/examples/{CG_misc/translocation/README_visualise.txt → CG_biomolecules/protein_folding_examples/1bead+chaperone/frustrated+minichaperone/README_visualize.txt}
Vtools/moltemplate/examples/{CG_misc/translocation/README_visualize.txt ← CG_solvent/cyclododecane+watMW/README_visualise.txt}
Mtools/moltemplate/examples/CG_misc/translocation/images/for_visualization/psf_file_created_by_topotools/system.psf
Mtools/moltemplate/examples/CG_misc/translocation/moltemplate_files/monomer.lt
Mtools/moltemplate/examples/CG_misc/translocation/moltemplate_files/system.lt
Mtools/moltemplate/examples/CG_misc/translocation/run.in.npt
Dtools/moltemplate/examples/CG_protein_folding_examples
Dtools/moltemplate/examples/CG_protein_folding_examples/1bead+chaperone
Vtools/moltemplate/examples/{CG_protein_folding_examples → CG_biomolecules/protein_folding_examples}/1bead+chaperone/README.TXT
Dtools/moltemplate/examples/CG_protein_folding_examples/1bead+chaperone/frustrated
Dtools/moltemplate/examples/CG_protein_folding_examples/1bead+chaperone/frustrated+chaperonin
Vtools/moltemplate/examples/{CG_protein_folding_examples → CG_biomolecules/protein_folding_examples}/1bead+chaperone/frustrated+chaperonin/README.TXT
Vtools/moltemplate/examples/{CG_protein_folding_examples → CG_biomolecules/protein_folding_examples}/1bead+chaperone/frustrated+chaperonin/README_run.sh
Vtools/moltemplate/examples/{CG_protein_folding_examples → CG_biomolecules/protein_folding_examples}/1bead+chaperone/frustrated+chaperonin/README_setup.sh
Vtools/moltemplate/examples/{CG_protein_folding_examples/1bead+chaperone/frustrated+chaperonin/README_visualise.txt → CG_biomolecules/protein_folding_examples/1bead+chaperone/frustrated/README_visualize.txt}
V(dir)tools/moltemplate/examples/{CG_protein_folding_examples/1bead+chaperone/frustrated+chaperonin/images/ → CG_biomolecules/protein_folding_examples/1bead+chaperone/frustrated+chaperonin/images}
V(dir)tools/moltemplate/examples/{CG_protein_folding_examples/1bead+chaperone/frustrated+chaperonin/images/for_visualization/ → CG_biomolecules/protein_folding_examples/1bead+chaperone/frustrated+chaperonin/images/for_visualization}
V(dir)tools/moltemplate/examples/{CG_protein_folding_examples/1bead+chaperone/frustrated+chaperonin/images/for_visualization/psf_file_created_by_topotools/ → CG_biomolecules/protein_folding_examples/1bead+chaperone/frustrated+chaperonin/images/for_visualization/psf_file_created_by_topotools}
Vtools/moltemplate/examples/{CG_protein_folding_examples → CG_biomolecules/protein_folding_examples}/1bead+chaperone/frustrated+chaperonin/images/for_visualization/psf_file_created_by_topotools/system.psf
Vtools/moltemplate/examples/{CG_protein_folding_examples → CG_biomolecules/protein_folding_examples}/1bead+chaperone/frustrated+chaperonin/images/misfolded+chaperonin_t=0tau_LR.jpg
Vtools/moltemplate/examples/{CG_protein_folding_examples → CG_biomolecules/protein_folding_examples}/1bead+chaperone/frustrated+chaperonin/images/unfolded+chaperonin_t=508750tau_LR.jpg
V(dir)tools/moltemplate/examples/{CG_protein_folding_examples/1bead+chaperone/frustrated+chaperonin/moltemplate_files/ → CG_biomolecules/protein_folding_examples/1bead+chaperone/frustrated+chaperonin/moltemplate_files}
Vtools/moltemplate/examples/{CG_protein_folding_examples → CG_biomolecules/protein_folding_examples}/1bead+chaperone/frustrated+chaperonin/moltemplate_files/1beadFrustrated.lt
Vtools/moltemplate/examples/{CG_protein_folding_examples → CG_biomolecules/protein_folding_examples}/1bead+chaperone/frustrated+chaperonin/moltemplate_files/1beadFrustrated_variants.lt
Vtools/moltemplate/examples/{CG_protein_folding_examples → CG_biomolecules/protein_folding_examples}/1bead+chaperone/frustrated+chaperonin/moltemplate_files/chaperonin.lt
V(dir)tools/moltemplate/examples/{CG_protein_folding_examples/1bead+chaperone/frustrated+chaperonin/moltemplate_files/generate_tables/ → CG_biomolecules/protein_folding_examples/1bead+chaperone/frustrated+chaperonin/moltemplate_files/generate_tables}
Vtools/moltemplate/examples/{CG_protein_folding_examples → CG_biomolecules/protein_folding_examples}/1bead+chaperone/frustrated+chaperonin/moltemplate_files/generate_tables/calc_chaperone_table.py
Vtools/moltemplate/examples/{CG_protein_folding_examples → CG_biomolecules/protein_folding_examples}/1bead+chaperone/frustrated+chaperonin/moltemplate_files/generate_tables/calc_dihedral_table.py
Vtools/moltemplate/examples/{CG_protein_folding_examples → CG_biomolecules/protein_folding_examples}/1bead+chaperone/frustrated+chaperonin/moltemplate_files/system.lt
Vtools/moltemplate/examples/{CG_protein_folding_examples → CG_biomolecules/protein_folding_examples}/1bead+chaperone/frustrated+chaperonin/moltemplate_files/table_chaperonin_h=0.475.dat
Vtools/moltemplate/examples/{CG_protein_folding_examples → CG_biomolecules/protein_folding_examples}/1bead+chaperone/frustrated+chaperonin/moltemplate_files/table_chaperonin_h=0.dat
Vtools/moltemplate/examples/{CG_protein_folding_examples → CG_biomolecules/protein_folding_examples}/1bead+chaperone/frustrated+chaperonin/moltemplate_files/table_dihedral_frustrated.dat
Vtools/moltemplate/examples/{CG_protein_folding_examples → CG_biomolecules/protein_folding_examples}/1bead+chaperone/frustrated+chaperonin/run.in.min
Vtools/moltemplate/examples/{CG_protein_folding_examples → CG_biomolecules/protein_folding_examples}/1bead+chaperone/frustrated+chaperonin/run.in.nvt
Dtools/moltemplate/examples/CG_protein_folding_examples/1bead+chaperone/frustrated+minichaperone
Vtools/moltemplate/examples/{CG_protein_folding_examples → CG_biomolecules/protein_folding_examples}/1bead+chaperone/frustrated+minichaperone/README.TXT
Vtools/moltemplate/examples/{CG_protein_folding_examples → CG_biomolecules/protein_folding_examples}/1bead+chaperone/frustrated+minichaperone/README_run.sh
Vtools/moltemplate/examples/{CG_protein_folding_examples → CG_biomolecules/protein_folding_examples}/1bead+chaperone/frustrated+minichaperone/README_setup.sh
Vtools/moltemplate/examples/{CG_protein_folding_examples/1bead+chaperone/frustrated+minichaperone/README_visualise.txt → CG_biomolecules/protein_folding_examples/1bead+chaperone/unfrustrated+chaperonin/README_visualize.txt}
V(dir)tools/moltemplate/examples/{CG_protein_folding_examples/1bead+chaperone/frustrated+minichaperone/images/ → CG_biomolecules/protein_folding_examples/1bead+chaperone/frustrated+minichaperone/images}
V(dir)tools/moltemplate/examples/{CG_protein_folding_examples/1bead+chaperone/frustrated+minichaperone/images/for_visualization/ → CG_biomolecules/protein_folding_examples/1bead+chaperone/frustrated+minichaperone/images/for_visualization}
V(dir)tools/moltemplate/examples/{CG_protein_folding_examples/1bead+chaperone/frustrated+minichaperone/images/for_visualization/psf_file_created_by_topotools/ → CG_biomolecules/protein_folding_examples/1bead+chaperone/frustrated+minichaperone/images/for_visualization/psf_file_created_by_topotools}
Vtools/moltemplate/examples/{CG_protein_folding_examples → CG_biomolecules/protein_folding_examples}/1bead+chaperone/frustrated+minichaperone/images/for_visualization/psf_file_created_by_topotools/system.psf
Vtools/moltemplate/examples/{CG_protein_folding_examples → CG_biomolecules/protein_folding_examples}/1bead+chaperone/frustrated+minichaperone/images/protein2x2x2+minichaperones2x2x2_t=0tau_LR.jpg
Vtools/moltemplate/examples/{CG_protein_folding_examples → CG_biomolecules/protein_folding_examples}/1bead+chaperone/frustrated+minichaperone/images/protein2x2x2+minichaperones2x2x2_t=67500tau_LR.jpg
Dtools/moltemplate/examples/CG_protein_folding_examples/1bead+chaperone/frustrated+minichaperone/moltemplate_files
Vtools/moltemplate/examples/{CG_protein_folding_examples → CG_biomolecules/protein_folding_examples}/1bead+chaperone/frustrated+minichaperone/moltemplate_files/1beadFrustrated.lt
Vtools/moltemplate/examples/{CG_protein_folding_examples → CG_biomolecules/protein_folding_examples}/1bead+chaperone/frustrated+minichaperone/moltemplate_files/1beadFrustrated_variants.lt
V(dir)tools/moltemplate/examples/{CG_protein_folding_examples/1bead+chaperone/frustrated+minichaperone/moltemplate_files/generate_tables/ → CG_biomolecules/protein_folding_examples/1bead+chaperone/frustrated+minichaperone/moltemplate_files/generate_tables}
Vtools/moltemplate/examples/{CG_protein_folding_examples → CG_biomolecules/protein_folding_examples}/1bead+chaperone/frustrated+minichaperone/moltemplate_files/generate_tables/calc_chaperone_table.py
Vtools/moltemplate/examples/{CG_protein_folding_examples → CG_biomolecules/protein_folding_examples}/1bead+chaperone/frustrated+minichaperone/moltemplate_files/generate_tables/calc_dihedral_table.py
Vtools/moltemplate/examples/{CG_protein_folding_examples → CG_biomolecules/protein_folding_examples}/1bead+chaperone/frustrated+minichaperone/moltemplate_files/minichaperone.lt
Dtools/moltemplate/examples/CG_protein_folding_examples/1bead+chaperone/frustrated+minichaperone/moltemplate_files/output_ttree
Dtools/moltemplate/examples/CG_protein_folding_examples/1bead+chaperone/frustrated+minichaperone/moltemplate_files/output_ttree/Data Angles
Dtools/moltemplate/examples/CG_protein_folding_examples/1bead+chaperone/frustrated+minichaperone/moltemplate_files/output_ttree/Data Angles By Type
Dtools/moltemplate/examples/CG_protein_folding_examples/1bead+chaperone/frustrated+minichaperone/moltemplate_files/output_ttree/Data Angles By Type.template
Dtools/moltemplate/examples/CG_protein_folding_examples/1bead+chaperone/frustrated+minichaperone/moltemplate_files/output_ttree/Data Angles.template
Dtools/moltemplate/examples/CG_protein_folding_examples/1bead+chaperone/frustrated+minichaperone/moltemplate_files/output_ttree/Data Atoms
Dtools/moltemplate/examples/CG_protein_folding_examples/1bead+chaperone/frustrated+minichaperone/moltemplate_files/output_ttree/Data Atoms.template
Dtools/moltemplate/examples/CG_protein_folding_examples/1bead+chaperone/frustrated+minichaperone/moltemplate_files/output_ttree/Data Bonds
Dtools/moltemplate/examples/CG_protein_folding_examples/1bead+chaperone/frustrated+minichaperone/moltemplate_files/output_ttree/Data Bonds.template
Dtools/moltemplate/examples/CG_protein_folding_examples/1bead+chaperone/frustrated+minichaperone/moltemplate_files/output_ttree/Data Boundary
Dtools/moltemplate/examples/CG_protein_folding_examples/1bead+chaperone/frustrated+minichaperone/moltemplate_files/output_ttree/Data Boundary.template
Dtools/moltemplate/examples/CG_protein_folding_examples/1bead+chaperone/frustrated+minichaperone/moltemplate_files/output_ttree/Data Dihedrals
Dtools/moltemplate/examples/CG_protein_folding_examples/1bead+chaperone/frustrated+minichaperone/moltemplate_files/output_ttree/Data Dihedrals.template
Dtools/moltemplate/examples/CG_protein_folding_examples/1bead+chaperone/frustrated+minichaperone/moltemplate_files/output_ttree/Data Masses
Dtools/moltemplate/examples/CG_protein_folding_examples/1bead+chaperone/frustrated+minichaperone/moltemplate_files/output_ttree/Data Masses.template
Dtools/moltemplate/examples/CG_protein_folding_examples/1bead+chaperone/frustrated+minichaperone/moltemplate_files/output_ttree/In Init
Dtools/moltemplate/examples/CG_protein_folding_examples/1bead+chaperone/frustrated+minichaperone/moltemplate_files/output_ttree/In Init.template
Dtools/moltemplate/examples/CG_protein_folding_examples/1bead+chaperone/frustrated+minichaperone/moltemplate_files/output_ttree/In Settings
Dtools/moltemplate/examples/CG_protein_folding_examples/1bead+chaperone/frustrated+minichaperone/moltemplate_files/output_ttree/In Settings.template
Dtools/moltemplate/examples/CG_protein_folding_examples/1bead+chaperone/frustrated+minichaperone/moltemplate_files/output_ttree/ttree_assignments.txt
Dtools/moltemplate/examples/CG_protein_folding_examples/1bead+chaperone/frustrated+minichaperone/moltemplate_files/system.data
Dtools/moltemplate/examples/CG_protein_folding_examples/1bead+chaperone/frustrated+minichaperone/moltemplate_files/system.in
Dtools/moltemplate/examples/CG_protein_folding_examples/1bead+chaperone/frustrated+minichaperone/moltemplate_files/system.in.init
Dtools/moltemplate/examples/CG_protein_folding_examples/1bead+chaperone/frustrated+minichaperone/moltemplate_files/system.in.settings
Vtools/moltemplate/examples/{CG_protein_folding_examples → CG_biomolecules/protein_folding_examples}/1bead+chaperone/frustrated+minichaperone/moltemplate_files/system.lt
Vtools/moltemplate/examples/{CG_protein_folding_examples → CG_biomolecules/protein_folding_examples}/1bead+chaperone/frustrated+minichaperone/moltemplate_files/table_dihedral_frustrated.dat
Vtools/moltemplate/examples/{CG_protein_folding_examples → CG_biomolecules/protein_folding_examples}/1bead+chaperone/frustrated+minichaperone/moltemplate_files/table_minichaperone_h=0.6.dat
Vtools/moltemplate/examples/{CG_protein_folding_examples → CG_biomolecules/protein_folding_examples}/1bead+chaperone/frustrated+minichaperone/moltemplate_files/table_minichaperone_h=0.dat
Vtools/moltemplate/examples/{CG_protein_folding_examples → CG_biomolecules/protein_folding_examples}/1bead+chaperone/frustrated+minichaperone/run.in.min
Vtools/moltemplate/examples/{CG_protein_folding_examples → CG_biomolecules/protein_folding_examples}/1bead+chaperone/frustrated+minichaperone/run.in.nvt
Vtools/moltemplate/examples/{CG_protein_folding_examples → CG_biomolecules/protein_folding_examples}/1bead+chaperone/frustrated/README.TXT
Vtools/moltemplate/examples/{CG_protein_folding_examples → CG_biomolecules/protein_folding_examples}/1bead+chaperone/frustrated/README_run.sh
Vtools/moltemplate/examples/{CG_protein_folding_examples → CG_biomolecules/protein_folding_examples}/1bead+chaperone/frustrated/README_setup.sh
Vtools/moltemplate/examples/{CG_protein_folding_examples/1bead+chaperone/frustrated/README_visualise.txt → CG_biomolecules/protein_folding_examples/1bead+chaperone/unfrustrated/README_visualize.txt}
V(dir)tools/moltemplate/examples/{CG_protein_folding_examples/1bead+chaperone/frustrated/images/ → CG_biomolecules/protein_folding_examples/1bead+chaperone/frustrated/images}
V(dir)tools/moltemplate/examples/{CG_protein_folding_examples/1bead+chaperone/frustrated/images/for_visualization/ → CG_biomolecules/protein_folding_examples/1bead+chaperone/frustrated/images/for_visualization}
V(dir)tools/moltemplate/examples/{CG_protein_folding_examples/1bead+chaperone/frustrated/images/for_visualization/psf_file_created_by_topotools/ → CG_biomolecules/protein_folding_examples/1bead+chaperone/frustrated/images/for_visualization/psf_file_created_by_topotools}
Vtools/moltemplate/examples/{CG_protein_folding_examples → CG_biomolecules/protein_folding_examples}/1bead+chaperone/frustrated/images/for_visualization/psf_file_created_by_topotools/system.psf
Vtools/moltemplate/examples/{CG_protein_folding_examples → CG_biomolecules/protein_folding_examples}/1bead+chaperone/frustrated/images/initial_conformation_t=0tau.jpg
Vtools/moltemplate/examples/{CG_protein_folding_examples → CG_biomolecules/protein_folding_examples}/1bead+chaperone/frustrated/images/misfolded_conformation_t=1250tau.jpg
V(dir)tools/moltemplate/examples/{CG_protein_folding_examples/1bead+chaperone/frustrated/moltemplate_files/ → CG_biomolecules/protein_folding_examples/1bead+chaperone/frustrated/moltemplate_files}
Vtools/moltemplate/examples/{CG_protein_folding_examples → CG_biomolecules/protein_folding_examples}/1bead+chaperone/frustrated/moltemplate_files/1beadFrustrated.lt
Vtools/moltemplate/examples/{CG_protein_folding_examples → CG_biomolecules/protein_folding_examples}/1bead+chaperone/frustrated/moltemplate_files/1beadFrustrated_variants.lt
V(dir)tools/moltemplate/examples/{CG_protein_folding_examples/1bead+chaperone/frustrated/moltemplate_files/generate_tables/ → CG_biomolecules/protein_folding_examples/1bead+chaperone/frustrated/moltemplate_files/generate_tables}
Vtools/moltemplate/examples/{CG_protein_folding_examples → CG_biomolecules/protein_folding_examples}/1bead+chaperone/frustrated/moltemplate_files/generate_tables/calc_dihedral_table.py
Vtools/moltemplate/examples/{CG_protein_folding_examples → CG_biomolecules/protein_folding_examples}/1bead+chaperone/frustrated/moltemplate_files/system.lt
Vtools/moltemplate/examples/{CG_protein_folding_examples → CG_biomolecules/protein_folding_examples}/1bead+chaperone/frustrated/moltemplate_files/table_dihedral_frustrated.dat
Vtools/moltemplate/examples/{CG_protein_folding_examples/1bead+chaperone/frustrated → CG_biomolecules/protein_folding_examples/1bead+chaperone/unfrustrated+chaperonin}/run.in.min
Vtools/moltemplate/examples/{CG_protein_folding_examples → CG_biomolecules/protein_folding_examples}/1bead+chaperone/frustrated/run_short_sim.in.nvt
Dtools/moltemplate/examples/CG_protein_folding_examples/1bead+chaperone/unfrustrated
Dtools/moltemplate/examples/CG_protein_folding_examples/1bead+chaperone/unfrustrated+chaperonin
Vtools/moltemplate/examples/{CG_protein_folding_examples → CG_biomolecules/protein_folding_examples}/1bead+chaperone/unfrustrated+chaperonin/README.TXT
Vtools/moltemplate/examples/{CG_protein_folding_examples → CG_biomolecules/protein_folding_examples}/1bead+chaperone/unfrustrated+chaperonin/README_run.sh
Vtools/moltemplate/examples/{CG_protein_folding_examples → CG_biomolecules/protein_folding_examples}/1bead+chaperone/unfrustrated+chaperonin/README_setup.sh
Vtools/moltemplate/examples/{CG_protein_folding_examples/1bead+chaperone/unfrustrated+chaperonin/README_visualise.txt → CG_biomolecules/protein_folding_examples/1beadProtSci2010/README_visualize.txt}
V(dir)tools/moltemplate/examples/{CG_protein_folding_examples/1bead+chaperone/unfrustrated+chaperonin/images/ → CG_biomolecules/protein_folding_examples/1bead+chaperone/unfrustrated+chaperonin/images}
V(dir)tools/moltemplate/examples/{CG_protein_folding_examples/1bead+chaperone/unfrustrated+chaperonin/images/for_visualization/ → CG_biomolecules/protein_folding_examples/1bead+chaperone/unfrustrated+chaperonin/images/for_visualization}
V(dir)tools/moltemplate/examples/{CG_protein_folding_examples/1bead+chaperone/unfrustrated+chaperonin/images/for_visualization/psf_file_created_by_topotools/ → CG_biomolecules/protein_folding_examples/1bead+chaperone/unfrustrated+chaperonin/images/for_visualization/psf_file_created_by_topotools}
Vtools/moltemplate/examples/{CG_protein_folding_examples → CG_biomolecules/protein_folding_examples}/1bead+chaperone/unfrustrated+chaperonin/images/for_visualization/psf_file_created_by_topotools/system.psf
Vtools/moltemplate/examples/{CG_protein_folding_examples → CG_biomolecules/protein_folding_examples}/1bead+chaperone/unfrustrated+chaperonin/images/unfrustrated+chaperonin_t=0tau_LR.jpg
Vtools/moltemplate/examples/{CG_protein_folding_examples → CG_biomolecules/protein_folding_examples}/1bead+chaperone/unfrustrated+chaperonin/images/unfrustrated+chaperonin_t=105tau_LR.jpg
V(dir)tools/moltemplate/examples/{CG_protein_folding_examples/1bead+chaperone/unfrustrated+chaperonin/moltemplate_files/ → CG_biomolecules/protein_folding_examples/1bead+chaperone/unfrustrated+chaperonin/moltemplate_files}
Vtools/moltemplate/examples/{CG_protein_folding_examples → CG_biomolecules/protein_folding_examples}/1bead+chaperone/unfrustrated+chaperonin/moltemplate_files/1beadUnfrustrated.lt
Vtools/moltemplate/examples/{CG_protein_folding_examples → CG_biomolecules/protein_folding_examples}/1bead+chaperone/unfrustrated+chaperonin/moltemplate_files/1beadUnfrustrated_variants.lt
Vtools/moltemplate/examples/{CG_protein_folding_examples → CG_biomolecules/protein_folding_examples}/1bead+chaperone/unfrustrated+chaperonin/moltemplate_files/chaperonin.lt
V(dir)tools/moltemplate/examples/{CG_protein_folding_examples/1bead+chaperone/unfrustrated+chaperonin/moltemplate_files/generate_tables/ → CG_biomolecules/protein_folding_examples/1bead+chaperone/unfrustrated+chaperonin/moltemplate_files/generate_tables}
Vtools/moltemplate/examples/{CG_protein_folding_examples → CG_biomolecules/protein_folding_examples}/1bead+chaperone/unfrustrated+chaperonin/moltemplate_files/generate_tables/calc_chaperone_table.py
Vtools/moltemplate/examples/{CG_protein_folding_examples → CG_biomolecules/protein_folding_examples}/1bead+chaperone/unfrustrated+chaperonin/moltemplate_files/system.lt
Vtools/moltemplate/examples/{CG_protein_folding_examples → CG_biomolecules/protein_folding_examples}/1bead+chaperone/unfrustrated+chaperonin/moltemplate_files/table_chaperonin_h=0.475.dat
Vtools/moltemplate/examples/{CG_protein_folding_examples → CG_biomolecules/protein_folding_examples}/1bead+chaperone/unfrustrated+chaperonin/moltemplate_files/table_chaperonin_h=0.dat
Vtools/moltemplate/examples/{CG_protein_folding_examples/1bead+chaperone/unfrustrated+chaperonin → CG_biomolecules/protein_folding_examples/1bead+chaperone/unfrustrated}/run.in.min
Vtools/moltemplate/examples/{CG_protein_folding_examples → CG_biomolecules/protein_folding_examples}/1bead+chaperone/unfrustrated+chaperonin/run.in.nvt
Vtools/moltemplate/examples/{CG_protein_folding_examples → CG_biomolecules/protein_folding_examples}/1bead+chaperone/unfrustrated/README.TXT
Vtools/moltemplate/examples/{CG_protein_folding_examples → CG_biomolecules/protein_folding_examples}/1bead+chaperone/unfrustrated/README_run.sh
Vtools/moltemplate/examples/{CG_protein_folding_examples → CG_biomolecules/protein_folding_examples}/1bead+chaperone/unfrustrated/README_setup.sh
Vtools/moltemplate/examples/{CG_protein_folding_examples/1bead+chaperone/unfrustrated/README_visualise.txt → CG_biomolecules/vesicle_PACKMOL/README_visualize.txt}
V(dir)tools/moltemplate/examples/{CG_protein_folding_examples/1bead+chaperone/unfrustrated/images/ → CG_biomolecules/protein_folding_examples/1bead+chaperone/unfrustrated/images}
V(dir)tools/moltemplate/examples/{CG_protein_folding_examples/1bead+chaperone/unfrustrated/images/for_visualization/ → CG_biomolecules/protein_folding_examples/1bead+chaperone/unfrustrated/images/for_visualization}
V(dir)tools/moltemplate/examples/{CG_protein_folding_examples/1bead+chaperone/unfrustrated/images/for_visualization/psf_file_created_by_topotools/ → CG_biomolecules/protein_folding_examples/1bead+chaperone/unfrustrated/images/for_visualization/psf_file_created_by_topotools}
Vtools/moltemplate/examples/{CG_protein_folding_examples → CG_biomolecules/protein_folding_examples}/1bead+chaperone/unfrustrated/images/for_visualization/psf_file_created_by_topotools/system.psf
Vtools/moltemplate/examples/{CG_protein_folding_examples → CG_biomolecules/protein_folding_examples}/1bead+chaperone/unfrustrated/images/unfrustrated_t=0tau_LR.jpg
Vtools/moltemplate/examples/{CG_protein_folding_examples → CG_biomolecules/protein_folding_examples}/1bead+chaperone/unfrustrated/images/unfrustrated_t=200tau_LR.jpg
V(dir)tools/moltemplate/examples/{CG_protein_folding_examples/1bead+chaperone/unfrustrated/moltemplate_files/ → CG_biomolecules/protein_folding_examples/1bead+chaperone/unfrustrated/moltemplate_files}
Vtools/moltemplate/examples/{CG_protein_folding_examples → CG_biomolecules/protein_folding_examples}/1bead+chaperone/unfrustrated/moltemplate_files/1beadUnfrustrated.lt
Vtools/moltemplate/examples/{CG_protein_folding_examples → CG_biomolecules/protein_folding_examples}/1bead+chaperone/unfrustrated/moltemplate_files/1beadUnfrustrated_variants.lt
Vtools/moltemplate/examples/{CG_protein_folding_examples → CG_biomolecules/protein_folding_examples}/1bead+chaperone/unfrustrated/moltemplate_files/system.lt
Vtools/moltemplate/examples/{CG_protein_folding_examples/1bead+chaperone/unfrustrated → CG_biomolecules/protein_folding_examples/1beadProtSci2010}/run.in.min
Vtools/moltemplate/examples/{CG_protein_folding_examples → CG_biomolecules/protein_folding_examples}/1bead+chaperone/unfrustrated/run.in.nvt
Dtools/moltemplate/examples/CG_protein_folding_examples/1beadProtSci2010
Vtools/moltemplate/examples/{CG_protein_folding_examples → CG_biomolecules/protein_folding_examples}/1beadProtSci2010/README.TXT
Vtools/moltemplate/examples/{CG_protein_folding_examples → CG_biomolecules/protein_folding_examples}/1beadProtSci2010/README_run.sh
Vtools/moltemplate/examples/{CG_protein_folding_examples → CG_biomolecules/protein_folding_examples}/1beadProtSci2010/README_setup.sh
Vtools/moltemplate/examples/{CG_protein_folding_examples/1beadProtSci2010/README_visualise.txt → CG_misc/random_heteropolymer/README_visualize.txt}
V(dir)tools/moltemplate/examples/{CG_protein_folding_examples/1beadProtSci2010/images/ → CG_biomolecules/protein_folding_examples/1beadProtSci2010/images}
Vtools/moltemplate/examples/{CG_protein_folding_examples → CG_biomolecules/protein_folding_examples}/1beadProtSci2010/images/4HelixBundle_t=0.jpg
Vtools/moltemplate/examples/{CG_protein_folding_examples → CG_biomolecules/protein_folding_examples}/1beadProtSci2010/images/4SheetBundle_t=0.jpg
V(dir)tools/moltemplate/examples/{CG_protein_folding_examples/1beadProtSci2010/images/for_visualization/ → CG_biomolecules/protein_folding_examples/1beadProtSci2010/images/for_visualization}
V(dir)tools/moltemplate/examples/{CG_protein_folding_examples/1beadProtSci2010/images/for_visualization/psf_file_created_by_topotools/ → CG_biomolecules/protein_folding_examples/1beadProtSci2010/images/for_visualization/psf_file_created_by_topotools}
Vtools/moltemplate/examples/{CG_protein_folding_examples → CG_biomolecules/protein_folding_examples}/1beadProtSci2010/images/for_visualization/psf_file_created_by_topotools/system.psf
Dtools/moltemplate/examples/CG_protein_folding_examples/1beadProtSci2010/moltemplate_files
Vtools/moltemplate/examples/{CG_protein_folding_examples → CG_biomolecules/protein_folding_examples}/1beadProtSci2010/moltemplate_files/1beadProtSci2010.lt
Dtools/moltemplate/examples/CG_protein_folding_examples/1beadProtSci2010/moltemplate_files/README.sh
Vtools/moltemplate/examples/{CG_protein_folding_examples → CG_biomolecules/protein_folding_examples}/1beadProtSci2010/moltemplate_files/system.lt
Dtools/moltemplate/examples/CG_protein_folding_examples/1beadProtSci2010/moltemplate_files/versions_with_comments
Vtools/moltemplate/examples/{CG_protein_folding_examples/1beadProtSci2010/moltemplate_files/versions_with_comments → CG_biomolecules/protein_folding_examples/1beadProtSci2010/moltemplate_files/other_implementations/class2}/1beadProtSci2010.lt
Vtools/moltemplate/examples/{CG_protein_folding_examples/1beadProtSci2010/moltemplate_files/versions_with_comments/1beadProtSci2010_charmm.lt → CG_biomolecules/protein_folding_examples/1beadProtSci2010/moltemplate_files/other_implementations/charmm/1beadProtSci2010.lt}
Dtools/moltemplate/examples/CG_protein_folding_examples/1beadProtSci2010/run.in.min
Vtools/moltemplate/examples/{CG_protein_folding_examples → CG_biomolecules/protein_folding_examples}/1beadProtSci2010/run.in.nvt
Mtools/moltemplate/examples/CG_solvent/cyclododecane+watMW/README_run.sh
Vtools/moltemplate/examples/{CG_solvent/cyclododecane+watMW/README_visualise.txt → CG_misc/translocation/README_visualize.txt}
Vtools/moltemplate/examples/{CG_solvent/cyclododecane+watMW/README_visualize.txt ← all_atom_examples/heteropolymer_melt_attempt1/README_visualise.txt}
Atools/moltemplate/examples/CG_solvent/cyclododecane+watMW/moltemplate_files/trappe1998.lt
Atools/moltemplate/examples/CG_solvent/cyclododecane+watMW/moltemplate_files/watmw.lt
Dtools/moltemplate/examples/CG_solvent/cyclododecane+watMW/run.in.min
Mtools/moltemplate/examples/CG_solvent/cyclododecane+watMW/run.in.npt
Mtools/moltemplate/examples/CG_solvent/cyclododecane+watMW/run.in.nvt
A(dir)tools/moltemplate/examples/all_atom_examples/aluminum_crystal_strain/
Atools/moltemplate/examples/all_atom_examples/aluminum_crystal_strain/README.TXT
Ptools/moltemplate/examples/all_atom_examples/aluminum_crystal_strain/README_setup.sh
Copied from tools/moltemplate/examples/CG_membrane_examples/membrane+protein/README_setup.sh
Vtools/moltemplate/examples/all_atom_examples/{aluminum_crystal_strain/README_visualize.txt ← waterSPCE+Na+Cl/README_visualise.txt}
A(dir)tools/moltemplate/examples/all_atom_examples/aluminum_crystal_strain/images/
Atools/moltemplate/examples/all_atom_examples/aluminum_crystal_strain/images/AlCell_LR.jpg
Atools/moltemplate/examples/all_atom_examples/aluminum_crystal_strain/images/AlCrystal10x10x10_t=0steps_LR.jpg
Atools/moltemplate/examples/all_atom_examples/aluminum_crystal_strain/images/AlCrystal10x10x10_t=20000steps_LR.jpg
A(dir)tools/moltemplate/examples/all_atom_examples/aluminum_crystal_strain/moltemplate_files/
Atools/moltemplate/examples/all_atom_examples/aluminum_crystal_strain/moltemplate_files/README.sh
Atools/moltemplate/examples/all_atom_examples/aluminum_crystal_strain/moltemplate_files/al_cell.lt
Atools/moltemplate/examples/all_atom_examples/aluminum_crystal_strain/moltemplate_files/system.lt
Atools/moltemplate/examples/all_atom_examples/aluminum_crystal_strain/run.in
Vtools/moltemplate/examples/all_atom_examples/convert_LAMMPS_to_LT_examples/cnad-cnt/{README.TXT → README_FIRST.TXT}
Vtools/moltemplate/examples/all_atom_examples/convert_LAMMPS_to_LT_examples/cnad-cnt/{README_FIRST.TXT ← README.TXT}
Mtools/moltemplate/examples/all_atom_examples/convert_LAMMPS_to_LT_examples/cnad-cnt/README_run_lammps.sh
Mtools/moltemplate/examples/all_atom_examples/convert_LAMMPS_to_LT_examples/cnad-cnt/README_run_ltemplify.sh
Mtools/moltemplate/examples/all_atom_examples/convert_LAMMPS_to_LT_examples/cnad-cnt/README_run_moltemplate.sh
Vtools/moltemplate/examples/all_atom_examples/convert_LAMMPS_to_LT_examples/cnad-cnt/{README_visualise.txt → README_visualize.txt}
Vtools/moltemplate/examples/all_atom_examples/convert_LAMMPS_to_LT_examples/cnad-cnt/{README_visualize.txt ← README_visualise.txt}
Dtools/moltemplate/examples/all_atom_examples/heteropolymer_melt_attempt1
Dtools/moltemplate/examples/all_atom_examples/heteropolymer_melt_attempt1/README.TXT
Dtools/moltemplate/examples/all_atom_examples/heteropolymer_melt_attempt1/README_run.sh
Vtools/moltemplate/examples/{all_atom_examples/heteropolymer_melt_attempt1 → silly/pyramids_vs_gravity}/README_setup.sh
Vtools/moltemplate/examples/{all_atom_examples/heteropolymer_melt_attempt1/README_visualise.txt → CG_solvent/cyclododecane+watMW/README_visualize.txt}
Dtools/moltemplate/examples/all_atom_examples/heteropolymer_melt_attempt1/images
Dtools/moltemplate/examples/all_atom_examples/heteropolymer_melt_attempt1/images/zoom1_rainbow_t=0ps_LR.jpg
Dtools/moltemplate/examples/all_atom_examples/heteropolymer_melt_attempt1/images/zoom2_rainbow_t=0ps_LR.jpg
Dtools/moltemplate/examples/all_atom_examples/heteropolymer_melt_attempt1/images/zoom2_rainbow_t=10ps_LR.jpg
Dtools/moltemplate/examples/all_atom_examples/heteropolymer_melt_attempt1/images/zoom2_rainbow_t=20ps_LR.jpg
Dtools/moltemplate/examples/all_atom_examples/heteropolymer_melt_attempt1/images/zoom2_rainbow_t=40ps_LR.jpg
Dtools/moltemplate/examples/all_atom_examples/heteropolymer_melt_attempt1/images/zoom2_rainbow_t=4ps_LR.jpg
Dtools/moltemplate/examples/all_atom_examples/heteropolymer_melt_attempt1/images/zoom2_rainbow_t=60ps_LR.jpg
Dtools/moltemplate/examples/all_atom_examples/heteropolymer_melt_attempt1/images/zoom2_rainbow_t=80ps_LR.jpg
Dtools/moltemplate/examples/all_atom_examples/heteropolymer_melt_attempt1/images/zoom3_rainbow_t=10ps_LR.jpg
Dtools/moltemplate/examples/all_atom_examples/heteropolymer_melt_attempt1/images/zoom3_rainbow_t=20ps_LR.jpg
Dtools/moltemplate/examples/all_atom_examples/heteropolymer_melt_attempt1/images/zoom3_rainbow_t=40ps_LR.jpg
Dtools/moltemplate/examples/all_atom_examples/heteropolymer_melt_attempt1/images/zoom3_rainbow_t=4ps_LR.jpg
Dtools/moltemplate/examples/all_atom_examples/heteropolymer_melt_attempt1/images/zoom3_rainbow_t=60ps_LR.jpg
Dtools/moltemplate/examples/all_atom_examples/heteropolymer_melt_attempt1/images/zoom3_rainbow_t=80ps_LR.jpg
Dtools/moltemplate/examples/all_atom_examples/heteropolymer_melt_attempt1/moltemplate_files
Dtools/moltemplate/examples/all_atom_examples/heteropolymer_melt_attempt1/moltemplate_files/monomers.lt
Dtools/moltemplate/examples/all_atom_examples/heteropolymer_melt_attempt1/moltemplate_files/polymer.lt
Dtools/moltemplate/examples/all_atom_examples/heteropolymer_melt_attempt1/moltemplate_files/system.lt
Dtools/moltemplate/examples/all_atom_examples/heteropolymer_melt_attempt1/run.in.npt
Dtools/moltemplate/examples/all_atom_examples/heteropolymer_melt_attempt1/run.in.nvt
A(dir)tools/moltemplate/examples/all_atom_examples/ice_crystal/
Atools/moltemplate/examples/all_atom_examples/ice_crystal/README_run.sh
Ptools/moltemplate/examples/all_atom_examples/ice_crystal/README_setup.sh
Copied from tools/moltemplate/examples/CG_membrane_examples/membrane+protein/README_setup.sh
Vtools/moltemplate/examples/{all_atom_examples/ice_crystal/README_visualize.txt ← CG_membrane_examples/membrane_BranniganPRE2005/README_visualise.txt}
A(dir)tools/moltemplate/examples/all_atom_examples/ice_crystal/images/
Atools/moltemplate/examples/all_atom_examples/ice_crystal/images/ice_rect8_crystal_3x2x2_LR.jpg
A(dir)tools/moltemplate/examples/all_atom_examples/ice_crystal/moltemplate_files/
Ptools/moltemplate/examples/all_atom_examples/ice_crystal/moltemplate_files/spce.lt
Copied from tools/moltemplate/examples/all_atom_examples/read_PDB_file_examples/waterSPCE_from_PDBfile/moltemplate_files/spce.lt
Atools/moltemplate/examples/all_atom_examples/ice_crystal/moltemplate_files/spce_ice_rect8.lt
Atools/moltemplate/examples/all_atom_examples/ice_crystal/moltemplate_files/system.lt
Atools/moltemplate/examples/all_atom_examples/ice_crystal/run.in.npt
Atools/moltemplate/examples/all_atom_examples/ice_crystal/run.in.nvt
Mtools/moltemplate/examples/all_atom_examples/nanotube+water/README.TXT
Atools/moltemplate/examples/all_atom_examples/nanotube+water/README_run.sh
Ptools/moltemplate/examples/all_atom_examples/nanotube+water/README_visualise.txt
Deleted after being copied to multiple locations:
tools/moltemplate/examples/all_atom_examples/nanotube+water/README_visualize.txt
tools/moltemplate/examples/silly/pyramids_vs_gravity/README_visualize.txt
Ptools/moltemplate/examples/all_atom_examples/nanotube+water/README_visualize.txt
Copied from tools/moltemplate/examples/all_atom_examples/nanotube+water/README_visualise.txt
Mtools/moltemplate/examples/all_atom_examples/nanotube+water/images/for_visualization/psf_file_created_by_topotools/system.psf
Mtools/moltemplate/examples/all_atom_examples/nanotube+water/moltemplate_files/graphene.lt
Mtools/moltemplate/examples/all_atom_examples/nanotube+water/moltemplate_files/graphene_walls.lt
Mtools/moltemplate/examples/all_atom_examples/nanotube+water/moltemplate_files/nanotube.lt
Mtools/moltemplate/examples/all_atom_examples/nanotube+water/moltemplate_files/system.lt
Mtools/moltemplate/examples/all_atom_examples/nanotube+water/moltemplate_files/water_box.lt
Mtools/moltemplate/examples/all_atom_examples/nanotube+water/run.in.npt
Mtools/moltemplate/examples/all_atom_examples/nanotube+water/run.in.nvt
Mtools/moltemplate/examples/all_atom_examples/read_PDB_file_examples/waterSPCE_from_PDBfile/README_run.sh
Dtools/moltemplate/examples/all_atom_examples/read_PDB_file_examples/waterSPCE_from_PDBfile/for_visualization
Dtools/moltemplate/examples/all_atom_examples/read_PDB_file_examples/waterSPCE_from_PDBfile/for_visualization/psf_file_created_by_topotools
Dtools/moltemplate/examples/all_atom_examples/read_PDB_file_examples/waterSPCE_from_PDBfile/for_visualization/psf_file_created_by_topotools/system.psf
Ptools/moltemplate/examples/all_atom_examples/read_PDB_file_examples/waterSPCE_from_PDBfile/moltemplate_files/spce.lt
Copied to tools/moltemplate/examples/all_atom_examples/ice_crystal/moltemplate_files/spce.lt
Dtools/moltemplate/examples/all_atom_examples/read_PDB_file_examples/waterSPCE_from_PDBfile/run.in.min
Mtools/moltemplate/examples/all_atom_examples/read_PDB_file_examples/waterSPCE_from_PDBfile/run.in.npt
Mtools/moltemplate/examples/all_atom_examples/read_PDB_file_examples/waterSPCE_from_PDBfile/run.in.nvt
Mtools/moltemplate/examples/all_atom_examples/waterSPCE+Na+Cl/README_run.sh
Vtools/moltemplate/examples/all_atom_examples/{waterSPCE+Na+Cl/README_visualise.txt → aluminum_crystal_strain/README_visualize.txt}
Ptools/moltemplate/examples/all_atom_examples/waterSPCE+Na+Cl/README_visualize.txt
Copied from tools/moltemplate/examples/CG_membrane_examples/membrane+protein/README_visualise.txt
Mtools/moltemplate/examples/all_atom_examples/waterSPCE+Na+Cl/moltemplate_files/ions.lt
Mtools/moltemplate/examples/all_atom_examples/waterSPCE+Na+Cl/moltemplate_files/spce.lt
Mtools/moltemplate/examples/all_atom_examples/waterSPCE+Na+Cl/moltemplate_files/system.lt
Dtools/moltemplate/examples/all_atom_examples/waterSPCE+Na+Cl/run.in.min
Mtools/moltemplate/examples/all_atom_examples/waterSPCE+Na+Cl/run.in.npt
Mtools/moltemplate/examples/all_atom_examples/waterSPCE+Na+Cl/run.in.nvt
A(dir)tools/moltemplate/examples/silly/
A(dir)tools/moltemplate/examples/silly/pyramids_vs_gravity/
Atools/moltemplate/examples/silly/pyramids_vs_gravity/README.TXT
Atools/moltemplate/examples/silly/pyramids_vs_gravity/README_VMD_graphene.txt
Vtools/moltemplate/examples/{silly/pyramids_vs_gravity ← all_atom_examples/heteropolymer_melt_attempt1}/README_setup.sh
Vtools/moltemplate/examples/{silly/pyramids_vs_gravity/README_visualize.txt ← all_atom_examples/nanotube+water/README_visualise.txt}
A(dir)tools/moltemplate/examples/silly/pyramids_vs_gravity/images/
Atools/moltemplate/examples/silly/pyramids_vs_gravity/images/pyramids_vs_gravity_t=04800steps_LR.jpg
Atools/moltemplate/examples/silly/pyramids_vs_gravity/images/pyramids_vs_gravity_t=12200steps_LR.jpg
Atools/moltemplate/examples/silly/pyramids_vs_gravity/images/pyramids_vs_gravity_t=33000steps_LR.jpg
A(dir)tools/moltemplate/examples/silly/pyramids_vs_gravity/moltemplate_files/
Atools/moltemplate/examples/silly/pyramids_vs_gravity/moltemplate_files/README.sh
Atools/moltemplate/examples/silly/pyramids_vs_gravity/moltemplate_files/graphene.lt
Atools/moltemplate/examples/silly/pyramids_vs_gravity/moltemplate_files/graphene_wall.lt
Atools/moltemplate/examples/silly/pyramids_vs_gravity/moltemplate_files/pyramids.lt
Atools/moltemplate/examples/silly/pyramids_vs_gravity/moltemplate_files/system.lt
Atools/moltemplate/examples/silly/pyramids_vs_gravity/run.in
A(dir)tools/moltemplate/examples/silly/sierpinski/
Atools/moltemplate/examples/silly/sierpinski/README.TXT
Vtools/moltemplate/examples/{silly/sierpinski ← CG_membrane_examples/membrane+protein}/README_setup.sh
Vtools/moltemplate/examples/{silly/sierpinski/README_visualize.txt ← CG_membrane_examples/membrane+protein/README_visualise.txt}
A(dir)tools/moltemplate/examples/silly/sierpinski/images/
Atools/moltemplate/examples/silly/sierpinski/images/AlCell_LR.jpg
Atools/moltemplate/examples/silly/sierpinski/images/lvl1_LR.jpg
Atools/moltemplate/examples/silly/sierpinski/images/lvl2_LR.jpg
Atools/moltemplate/examples/silly/sierpinski/images/lvl3_LR.jpg
Atools/moltemplate/examples/silly/sierpinski/images/serpinski_cube_lattice_8cells_t=0_zoom1_LR2.jpg
Atools/moltemplate/examples/silly/sierpinski/images/serpinski_cube_lattice_8cells_t=7400_LR.jpg
A(dir)tools/moltemplate/examples/silly/sierpinski/moltemplate_files/
Atools/moltemplate/examples/silly/sierpinski/moltemplate_files/al_cell.lt
A(dir)tools/moltemplate/examples/silly/sierpinski/moltemplate_files/elegant_inefficient_version/
Atools/moltemplate/examples/silly/sierpinski/moltemplate_files/elegant_inefficient_version/al_cell.lt
Atools/moltemplate/examples/silly/sierpinski/moltemplate_files/elegant_inefficient_version/sierpinski_cubes.lt
Atools/moltemplate/examples/silly/sierpinski/moltemplate_files/elegant_inefficient_version/system.lt
Atools/moltemplate/examples/silly/sierpinski/moltemplate_files/sierpinski_cubes.lt
Atools/moltemplate/examples/silly/sierpinski/moltemplate_files/system.lt
Atools/moltemplate/examples/silly/sierpinski/run.in
Mtools/moltemplate/moltemplate_manual.pdf
Mtools/moltemplate/src/ltemplify.py
Mtools/moltemplate/src/lttree.py
Mtools/moltemplate/src/lttree_check.py
Dtools/moltemplate/src/lttree_missing_coeffs.py
Mtools/moltemplate/src/lttree_postprocess.py
Mtools/moltemplate/src/moltemplate.sh
Atools/moltemplate/src/nbody_Bonds.py
Mtools/moltemplate/src/nbody_by_type.py
Mtools/moltemplate/src/nbody_fix_ttree_assignments.py
Atools/moltemplate/src/nbody_reorder_atoms.py
Atools/moltemplate/src/ordereddict.py
Mtools/moltemplate/src/renumber_DATA_first_column.py
Mtools/moltemplate/src/ttree.py
Mtools/moltemplate/src/ttree_render.py

rLAMMPSc1b6654dbc9c

View Options

doc/Manual.html

View Options

doc/Manual.txt

View Options

doc/Section_commands.html

View Options

doc/Section_commands.txt

View Options

doc/fix_reax_bonds.html

View Options

doc/fix_reax_bonds.txt

View Options

doc/fix_reaxc_species.txt

View Options

doc/fix_species.html

View Options

doc/fix_species.txt

View Options

doc/kspace_modify.html

View Options

doc/kspace_modify.txt

View Options

doc/kspace_style.html

View Options

doc/kspace_style.txt

View Options

doc/pair_reax_c.html

View Options

doc/pair_reax_c.txt

View Options

src/DIPOLE/atom_vec_dipole.cpp

View Options

src/GPU/pppm_gpu.cpp

View Options

src/KSPACE/ewald.cpp

View Options

src/KSPACE/ewald.h

View Options

src/KSPACE/ewald_disp.cpp

View Options

src/KSPACE/msm.cpp

View Options

src/KSPACE/msm.h

View Options

src/KSPACE/msm_cg.cpp

View Options

src/KSPACE/pppm.cpp

View Options

src/KSPACE/pppm.h

View Options

src/KSPACE/pppm_cg.cpp

View Options

src/KSPACE/pppm_disp.cpp

View Options

src/KSPACE/pppm_disp_tip4p.cpp

View Options

src/KSPACE/pppm_old.cpp

View Options

src/KSPACE/pppm_tip4p.cpp

View Options

src/MOLECULE/atom_vec_full.cpp

View Options

src/PERI/atom_vec_peri.cpp

View Options

src/REPLICA/prd.cpp

View Options

src/USER-AWPMD/atom_vec_wavepacket.cpp

View Options

src/USER-CUDA/pppm_cuda.cpp

View Options

src/USER-EFF/atom_vec_electron.cpp

View Options

src/USER-OMP/ewald_omp.cpp

View Options

src/USER-OMP/msm_cg_omp.cpp

View Options

src/USER-OMP/msm_omp.cpp

View Options

src/USER-OMP/pppm_cg_omp.cpp

View Options

src/USER-OMP/pppm_disp_omp.cpp

View Options

src/USER-OMP/pppm_disp_tip4p_omp.cpp

View Options

src/USER-OMP/pppm_omp.cpp

View Options

src/USER-OMP/pppm_tip4p_omp.cpp

View Options

src/USER-REAXC/compute_spec_atom.cpp

View Options

src/USER-REAXC/compute_spec_atom.h

View Options

src/USER-REAXC/fix_reaxc_bonds.cpp

View Options

src/USER-REAXC/fix_species.cpp

View Options

src/USER-REAXC/fix_species.h

View Options

src/USER-REAXC/pair_reax_c.cpp

View Options

src/USER-SPH/atom_vec_meso.cpp

View Options

src/atom_vec.cpp

View Options

src/atom_vec_charge.cpp

View Options

src/atom_vec_ellipsoid.cpp

View Options

src/atom_vec_line.cpp

View Options

src/atom_vec_sphere.cpp

View Options

src/atom_vec_tri.cpp

View Options

src/domain.cpp

View Options

src/kspace.cpp

View Options

src/write_data.cpp

View Options

tools/moltemplate/LICENSE.TXT

View Options

tools/moltemplate/common/graphene.lt

View Options

tools/moltemplate/common/images/graphene_unit_cell.jpg

View Options

tools/moltemplate/common/images/ice_rect8_unitcell.png

View Options

tools/moltemplate/common/images/spce_ball_and_stick.jpg

View Options

tools/moltemplate/common/spce.lt

View Options

tools/moltemplate/common/spce_ice_rect8.lt

View Options

tools/moltemplate/common/watmw.lt

View Options

tools/moltemplate/examples/CG_biomolecules/membrane+protein/README.TXT

View Options

tools/moltemplate/examples/CG_biomolecules/membrane+protein/README_run.sh

View Options

tools/moltemplate/examples/CG_biomolecules/membrane+protein/README_setup.sh

View Options

tools/moltemplate/examples/CG_biomolecules/membrane+protein/README_visualize.txt

View Options

tools/moltemplate/examples/CG_biomolecules/membrane+protein/images/4HelixOrig+Lipid2005_t=1290ps_LR.jpg

View Options

tools/moltemplate/examples/CG_biomolecules/membrane+protein/images/for_visualization/psf_file_created_by_topotools/system.psf

View Options

tools/moltemplate/examples/CG_biomolecules/membrane+protein/images/membrane+protein_t=0ps_LR.jpg

View Options

tools/moltemplate/examples/CG_biomolecules/membrane+protein/images/membrane+protein_t=0ps_no_pbc_LR.jpg

View Options

tools/moltemplate/examples/CG_biomolecules/membrane+protein/images/membrane+protein_t=0ps_top_LR.jpg

View Options

tools/moltemplate/examples/CG_biomolecules/membrane+protein/images/membrane+protein_t=5000ps_LR.jpg

View Options

tools/moltemplate/examples/CG_biomolecules/membrane+protein/moltemplate_files/1beadProtSci2010.lt

View Options

tools/moltemplate/examples/CG_biomolecules/membrane+protein/moltemplate_files/1beadProtSci2010_variations.lt

View Options

tools/moltemplate/examples/CG_biomolecules/membrane+protein/moltemplate_files/CGLipidBr2005.lt

View Options

tools/moltemplate/examples/CG_biomolecules/membrane+protein/moltemplate_files/calc_table/calc_CGLipidTableINTvsINT.py

View Options

tools/moltemplate/examples/CG_biomolecules/membrane+protein/moltemplate_files/calc_table/version_charmm_cutoff/calc_table.py

View Options

tools/moltemplate/examples/CG_biomolecules/membrane+protein/moltemplate_files/system.lt

View Options

tools/moltemplate/examples/CG_biomolecules/membrane+protein/moltemplate_files/table_int.dat

View Options

tools/moltemplate/examples/CG_biomolecules/membrane+protein/run.in.min

View Options

tools/moltemplate/examples/CG_biomolecules/membrane+protein/run.in.npt

View Options

tools/moltemplate/examples/CG_biomolecules/membrane+protein/run.in.nvt

View Options

tools/moltemplate/examples/CG_biomolecules/membrane_BranniganPRE2005/README.TXT

View Options

tools/moltemplate/examples/CG_biomolecules/membrane_BranniganPRE2005/README_run.sh

View Options

tools/moltemplate/examples/CG_biomolecules/membrane_BranniganPRE2005/README_setup.sh

View Options

tools/moltemplate/examples/CG_biomolecules/membrane_BranniganPRE2005/README_visualize.txt

View Options

tools/moltemplate/examples/CG_biomolecules/membrane_BranniganPRE2005/images/DLPC.jpg

View Options

tools/moltemplate/examples/CG_biomolecules/membrane_BranniganPRE2005/images/DPPC+DLPC_bilayer32x37_t=0ps_LR.jpg

View Options

tools/moltemplate/examples/CG_biomolecules/membrane_BranniganPRE2005/images/DPPC+DLPC_bilayer32x37_t=0ps_no_pbc_LR.jpg

View Options

tools/moltemplate/examples/CG_biomolecules/membrane_BranniganPRE2005/images/DPPC+DLPC_bilayer32x37_t=500ps_LR.jpg

View Options

tools/moltemplate/examples/CG_biomolecules/membrane_BranniganPRE2005/images/DPPC.jpg

View Options

tools/moltemplate/examples/CG_biomolecules/membrane_BranniganPRE2005/moltemplate_files/CGLipidBr2005Orig.lt

View Options

tools/moltemplate/examples/CG_biomolecules/membrane_BranniganPRE2005/moltemplate_files/calc_table/calc_table.py

View Options

tools/moltemplate/examples/CG_biomolecules/membrane_BranniganPRE2005/moltemplate_files/calc_table/version_charmm_cutoff/calc_table.py

View Options

tools/moltemplate/examples/CG_biomolecules/membrane_BranniganPRE2005/moltemplate_files/system.lt

View Options

tools/moltemplate/examples/CG_biomolecules/membrane_BranniganPRE2005/moltemplate_files/table_int.dat

View Options

tools/moltemplate/examples/CG_biomolecules/membrane_BranniganPRE2005/run.in.min

View Options

tools/moltemplate/examples/CG_biomolecules/membrane_BranniganPRE2005/run.in.npt

View Options

tools/moltemplate/examples/CG_biomolecules/membrane_BranniganPRE2005/run.in.nvt

View Options

tools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/README.TXT

View Options

tools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/frustrated+chaperonin/README.TXT

View Options

tools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/frustrated+chaperonin/README_run.sh

View Options

tools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/frustrated+chaperonin/README_setup.sh

View Options

tools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/frustrated+chaperonin/README_visualize.txt

View Options

tools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/frustrated+chaperonin/images/for_visualization/psf_file_created_by_topotools/system.psf

View Options

tools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/frustrated+chaperonin/images/misfolded+chaperonin_t=0tau_LR.jpg

View Options

tools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/frustrated+chaperonin/images/unfolded+chaperonin_t=508750tau_LR.jpg

View Options

tools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/frustrated+chaperonin/moltemplate_files/1beadFrustrated.lt

View Options

tools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/frustrated+chaperonin/moltemplate_files/1beadFrustrated_variants.lt

View Options

tools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/frustrated+chaperonin/moltemplate_files/chaperonin.lt

View Options

tools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/frustrated+chaperonin/moltemplate_files/generate_tables/calc_chaperone_table.py

View Options

tools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/frustrated+chaperonin/moltemplate_files/generate_tables/calc_dihedral_table.py

View Options

tools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/frustrated+chaperonin/moltemplate_files/system.lt

View Options

tools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/frustrated+chaperonin/moltemplate_files/table_chaperonin_h=0.475.dat

View Options

tools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/frustrated+chaperonin/moltemplate_files/table_chaperonin_h=0.dat

View Options

tools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/frustrated+chaperonin/moltemplate_files/table_dihedral_frustrated.dat

View Options

tools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/frustrated+chaperonin/run.in.min

View Options

tools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/frustrated+chaperonin/run.in.nvt

View Options

tools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/frustrated+minichaperone/README.TXT

View Options

tools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/frustrated+minichaperone/README_run.sh

View Options

tools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/frustrated+minichaperone/README_setup.sh

View Options

tools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/frustrated+minichaperone/README_visualize.txt

View Options

tools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/frustrated+minichaperone/images/for_visualization/psf_file_created_by_topotools/system.psf

View Options

tools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/frustrated+minichaperone/images/protein2x2x2+minichaperones2x2x2_t=0tau_LR.jpg

View Options

tools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/frustrated+minichaperone/images/protein2x2x2+minichaperones2x2x2_t=67500tau_LR.jpg

View Options

tools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/frustrated+minichaperone/moltemplate_files/1beadFrustrated.lt

View Options

tools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/frustrated+minichaperone/moltemplate_files/1beadFrustrated_variants.lt

View Options

tools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/frustrated+minichaperone/moltemplate_files/generate_tables/calc_chaperone_table.py

View Options

tools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/frustrated+minichaperone/moltemplate_files/generate_tables/calc_dihedral_table.py

View Options

tools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/frustrated+minichaperone/moltemplate_files/minichaperone.lt

View Options

tools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/frustrated+minichaperone/moltemplate_files/system.lt

View Options

tools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/frustrated+minichaperone/moltemplate_files/table_dihedral_frustrated.dat

View Options

tools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/frustrated+minichaperone/moltemplate_files/table_minichaperone_h=0.6.dat

View Options

tools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/frustrated+minichaperone/moltemplate_files/table_minichaperone_h=0.dat

View Options

tools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/frustrated+minichaperone/run.in.min

View Options

tools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/frustrated+minichaperone/run.in.nvt

View Options

tools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/frustrated/README.TXT

View Options

tools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/frustrated/README_run.sh

View Options

tools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/frustrated/README_setup.sh

View Options

tools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/frustrated/README_visualize.txt

View Options

tools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/frustrated/images/for_visualization/psf_file_created_by_topotools/system.psf

View Options

tools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/frustrated/images/initial_conformation_t=0tau.jpg

View Options

tools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/frustrated/images/misfolded_conformation_t=1250tau.jpg

View Options

tools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/frustrated/moltemplate_files/1beadFrustrated.lt

View Options

tools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/frustrated/moltemplate_files/1beadFrustrated_variants.lt

View Options

tools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/frustrated/moltemplate_files/generate_tables/calc_dihedral_table.py

View Options

tools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/frustrated/moltemplate_files/system.lt

View Options

tools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/frustrated/moltemplate_files/table_dihedral_frustrated.dat

View Options

tools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/frustrated/run.in.min

View Options

tools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/frustrated/run_short_sim.in.nvt

View Options

tools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/unfrustrated+chaperonin/README.TXT

View Options

tools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/unfrustrated+chaperonin/README_run.sh

View Options

tools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/unfrustrated+chaperonin/README_setup.sh

View Options

tools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/unfrustrated+chaperonin/README_visualize.txt

View Options

tools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/unfrustrated+chaperonin/images/for_visualization/psf_file_created_by_topotools/system.psf

View Options

tools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/unfrustrated+chaperonin/images/unfrustrated+chaperonin_t=0tau_LR.jpg

View Options

tools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/unfrustrated+chaperonin/images/unfrustrated+chaperonin_t=105tau_LR.jpg

View Options

tools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/unfrustrated+chaperonin/moltemplate_files/1beadUnfrustrated.lt

View Options

tools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/unfrustrated+chaperonin/moltemplate_files/1beadUnfrustrated_variants.lt

View Options

tools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/unfrustrated+chaperonin/moltemplate_files/chaperonin.lt

View Options

tools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/unfrustrated+chaperonin/moltemplate_files/generate_tables/calc_chaperone_table.py

View Options

tools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/unfrustrated+chaperonin/moltemplate_files/system.lt

View Options

tools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/unfrustrated+chaperonin/moltemplate_files/table_chaperonin_h=0.475.dat

View Options

tools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/unfrustrated+chaperonin/moltemplate_files/table_chaperonin_h=0.dat

View Options

tools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/unfrustrated+chaperonin/run.in.min

View Options

tools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/unfrustrated+chaperonin/run.in.nvt

View Options

tools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/unfrustrated/README.TXT

View Options

tools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/unfrustrated/README_run.sh

View Options

tools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/unfrustrated/README_setup.sh

View Options

tools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/unfrustrated/README_visualize.txt

View Options

tools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/unfrustrated/images/for_visualization/psf_file_created_by_topotools/system.psf

View Options

tools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/unfrustrated/images/unfrustrated_t=0tau_LR.jpg

View Options

tools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/unfrustrated/images/unfrustrated_t=200tau_LR.jpg

View Options

tools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/unfrustrated/moltemplate_files/1beadUnfrustrated.lt

View Options

tools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/unfrustrated/moltemplate_files/1beadUnfrustrated_variants.lt

View Options

tools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/unfrustrated/moltemplate_files/system.lt

View Options

tools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/unfrustrated/run.in.min

View Options

tools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/unfrustrated/run.in.nvt

View Options

tools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1beadProtSci2010/README.TXT

View Options

tools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1beadProtSci2010/README_run.sh

View Options

tools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1beadProtSci2010/README_setup.sh

View Options

tools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1beadProtSci2010/README_visualize.txt

View Options

tools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1beadProtSci2010/images/4HelixBundle_t=0.jpg

View Options

tools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1beadProtSci2010/images/4SheetBundle_t=0.jpg

View Options

tools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1beadProtSci2010/images/for_visualization/psf_file_created_by_topotools/system.psf

View Options

tools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1beadProtSci2010/moltemplate_files/1beadProtSci2010.lt

View Options

tools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1beadProtSci2010/moltemplate_files/README.sh

View Options

tools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1beadProtSci2010/moltemplate_files/other_implementations/README.TXT

View Options

tools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1beadProtSci2010/moltemplate_files/other_implementations/charmm/1beadProtSci2010.lt

View Options

tools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1beadProtSci2010/moltemplate_files/other_implementations/class2/1beadProtSci2010.lt

View Options

tools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1beadProtSci2010/moltemplate_files/system.lt

View Options

tools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1beadProtSci2010/run.in.min

View Options

tools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1beadProtSci2010/run.in.nvt

View Options

tools/moltemplate/examples/CG_biomolecules/vesicle_PACKMOL/README.TXT

View Options

tools/moltemplate/examples/CG_biomolecules/vesicle_PACKMOL/README_run.sh

View Options

tools/moltemplate/examples/CG_biomolecules/vesicle_PACKMOL/README_setup.sh

View Options

tools/moltemplate/examples/CG_biomolecules/vesicle_PACKMOL/README_visualize.txt

View Options

tools/moltemplate/examples/CG_biomolecules/vesicle_PACKMOL/images/vesicle_hole_blackbk_LR.jpg

View Options

tools/moltemplate/examples/CG_biomolecules/vesicle_PACKMOL/moltemplate_files/1beadProtSci2010.lt

View Options

tools/moltemplate/examples/CG_biomolecules/vesicle_PACKMOL/moltemplate_files/1beadProtSci2010_variations.lt

View Options

tools/moltemplate/examples/CG_biomolecules/vesicle_PACKMOL/moltemplate_files/CGLipidBr2005.lt

View Options

tools/moltemplate/examples/CG_biomolecules/vesicle_PACKMOL/moltemplate_files/README.sh

View Options

tools/moltemplate/examples/CG_biomolecules/vesicle_PACKMOL/moltemplate_files/calc_table/calc_CGLipidTableINTvsINT.py

View Options

tools/moltemplate/examples/CG_biomolecules/vesicle_PACKMOL/moltemplate_files/calc_table/version_charmm_cutoff/calc_table.py

View Options

tools/moltemplate/examples/CG_biomolecules/vesicle_PACKMOL/moltemplate_files/system.lt

View Options

tools/moltemplate/examples/CG_biomolecules/vesicle_PACKMOL/moltemplate_files/table_int.dat

View Options

tools/moltemplate/examples/CG_biomolecules/vesicle_PACKMOL/packmol_files/DLPC.xyz

View Options

tools/moltemplate/examples/CG_biomolecules/vesicle_PACKMOL/packmol_files/DPPC.xyz

View Options

tools/moltemplate/examples/CG_biomolecules/vesicle_PACKMOL/packmol_files/README.sh

View Options

tools/moltemplate/examples/CG_biomolecules/vesicle_PACKMOL/packmol_files/protein.xyz

View Options

tools/moltemplate/examples/CG_biomolecules/vesicle_PACKMOL/packmol_files/step1_proteins.inp

View Options

tools/moltemplate/examples/CG_biomolecules/vesicle_PACKMOL/packmol_files/step2_innerlayer.inp

View Options

tools/moltemplate/examples/CG_biomolecules/vesicle_PACKMOL/packmol_files/step3_outerlayer.inp

View Options

tools/moltemplate/examples/CG_biomolecules/vesicle_PACKMOL/run.in.min

View Options

tools/moltemplate/examples/CG_biomolecules/vesicle_PACKMOL/run.in.nvt

View Options

tools/moltemplate/examples/CG_membrane_examples

View Options

tools/moltemplate/examples/CG_membrane_examples/membrane+protein

View Options

tools/moltemplate/examples/CG_membrane_examples/membrane+protein/README.TXT

View Options

tools/moltemplate/examples/CG_membrane_examples/membrane+protein/README_run.sh

View Options

tools/moltemplate/examples/CG_membrane_examples/membrane+protein/README_setup.sh

View Options

tools/moltemplate/examples/CG_membrane_examples/membrane+protein/README_visualise.txt

View Options

tools/moltemplate/examples/CG_membrane_examples/membrane+protein/images

View Options

tools/moltemplate/examples/CG_membrane_examples/membrane+protein/images/4HelixOrig+Lipid2005_t=1290ps_LR.jpg

View Options

tools/moltemplate/examples/CG_membrane_examples/membrane+protein/images/for_visualization

View Options

tools/moltemplate/examples/CG_membrane_examples/membrane+protein/images/for_visualization/psf_file_created_by_topotools

View Options

tools/moltemplate/examples/CG_membrane_examples/membrane+protein/images/for_visualization/psf_file_created_by_topotools/system.psf

View Options

tools/moltemplate/examples/CG_membrane_examples/membrane+protein/images/membrane+protein_t=0ps_LR.jpg

View Options

tools/moltemplate/examples/CG_membrane_examples/membrane+protein/images/membrane+protein_t=0ps_no_pbc_LR.jpg

View Options

tools/moltemplate/examples/CG_membrane_examples/membrane+protein/images/membrane+protein_t=0ps_top_LR.jpg

View Options

tools/moltemplate/examples/CG_membrane_examples/membrane+protein/images/membrane+protein_t=5000ps_LR.jpg

View Options

tools/moltemplate/examples/CG_membrane_examples/membrane+protein/moltemplate_files

View Options

tools/moltemplate/examples/CG_membrane_examples/membrane+protein/moltemplate_files/1beadProtSci2010.lt

View Options

tools/moltemplate/examples/CG_membrane_examples/membrane+protein/moltemplate_files/1beadProtSci2010_variations.lt

View Options

tools/moltemplate/examples/CG_membrane_examples/membrane+protein/moltemplate_files/CGLipidBr2005.lt

View Options

tools/moltemplate/examples/CG_membrane_examples/membrane+protein/moltemplate_files/calc_table

View Options

tools/moltemplate/examples/CG_membrane_examples/membrane+protein/moltemplate_files/calc_table/calc_CGLipidTableINTvsINT.py

View Options

tools/moltemplate/examples/CG_membrane_examples/membrane+protein/moltemplate_files/calc_table/version_charmm_cutoff

View Options

tools/moltemplate/examples/CG_membrane_examples/membrane+protein/moltemplate_files/calc_table/version_charmm_cutoff/calc_table.py

View Options

tools/moltemplate/examples/CG_membrane_examples/membrane+protein/moltemplate_files/system.lt

View Options

tools/moltemplate/examples/CG_membrane_examples/membrane+protein/moltemplate_files/table_int.dat

View Options

tools/moltemplate/examples/CG_membrane_examples/membrane+protein/run.in.min

View Options

tools/moltemplate/examples/CG_membrane_examples/membrane+protein/run.in.npt

View Options

tools/moltemplate/examples/CG_membrane_examples/membrane+protein/run.in.nvt

View Options

tools/moltemplate/examples/CG_membrane_examples/membrane_BranniganPRE2005

View Options

tools/moltemplate/examples/CG_membrane_examples/membrane_BranniganPRE2005/README.TXT

View Options

tools/moltemplate/examples/CG_membrane_examples/membrane_BranniganPRE2005/README_run.sh

View Options

tools/moltemplate/examples/CG_membrane_examples/membrane_BranniganPRE2005/README_setup.sh

View Options

tools/moltemplate/examples/CG_membrane_examples/membrane_BranniganPRE2005/README_visualise.txt

View Options

tools/moltemplate/examples/CG_membrane_examples/membrane_BranniganPRE2005/images/DLPC.jpg

View Options

tools/moltemplate/examples/CG_membrane_examples/membrane_BranniganPRE2005/images/DPPC+DLPC_bilayer32x37_t=0ps_LR.jpg

View Options

tools/moltemplate/examples/CG_membrane_examples/membrane_BranniganPRE2005/images/DPPC+DLPC_bilayer32x37_t=0ps_no_pbc_LR.jpg

View Options

tools/moltemplate/examples/CG_membrane_examples/membrane_BranniganPRE2005/images/DPPC+DLPC_bilayer32x37_t=500ps_LR.jpg

View Options

tools/moltemplate/examples/CG_membrane_examples/membrane_BranniganPRE2005/images/DPPC.jpg

View Options

tools/moltemplate/examples/CG_membrane_examples/membrane_BranniganPRE2005/moltemplate_files

View Options

tools/moltemplate/examples/CG_membrane_examples/membrane_BranniganPRE2005/moltemplate_files/CGLipidBr2005.lt

View Options

tools/moltemplate/examples/CG_membrane_examples/membrane_BranniganPRE2005/moltemplate_files/generate_tables

View Options

tools/moltemplate/examples/CG_membrane_examples/membrane_BranniganPRE2005/moltemplate_files/generate_tables/calc_table.py

View Options

tools/moltemplate/examples/CG_membrane_examples/membrane_BranniganPRE2005/moltemplate_files/system.lt

View Options

tools/moltemplate/examples/CG_membrane_examples/membrane_BranniganPRE2005/moltemplate_files/table_int.dat

View Options

tools/moltemplate/examples/CG_membrane_examples/membrane_BranniganPRE2005/moltemplate_files/version_charmm_cutoff

View Options

tools/moltemplate/examples/CG_membrane_examples/membrane_BranniganPRE2005/moltemplate_files/version_charmm_cutoff/calc_table.py

View Options

tools/moltemplate/examples/CG_membrane_examples/membrane_BranniganPRE2005/moltemplate_files/version_charmm_cutoff/table_int.dat

View Options

tools/moltemplate/examples/CG_membrane_examples/membrane_BranniganPRE2005/run.in.min

View Options

tools/moltemplate/examples/CG_membrane_examples/membrane_BranniganPRE2005/run.in.npt

View Options

tools/moltemplate/examples/CG_membrane_examples/membrane_BranniganPRE2005/run.in.nvt

View Options

tools/moltemplate/examples/CG_misc/2bead_heteropolymer/README_run.sh

View Options

tools/moltemplate/examples/CG_misc/2bead_heteropolymer/README_visualise.txt

View Options

tools/moltemplate/examples/CG_misc/2bead_heteropolymer/README_visualize.txt

View Options

tools/moltemplate/examples/CG_misc/2bead_heteropolymer/run.in.min

View Options

tools/moltemplate/examples/CG_misc/random_heteropolymer/README_run.sh

View Options

tools/moltemplate/examples/CG_misc/random_heteropolymer/README_visualise.txt

View Options

tools/moltemplate/examples/CG_misc/random_heteropolymer/README_visualize.txt

View Options

tools/moltemplate/examples/CG_misc/random_heteropolymer/moltemplate_files/monomers.lt

View Options

tools/moltemplate/examples/CG_misc/translocation/README_run.sh

View Options

tools/moltemplate/examples/CG_misc/translocation/README_visualise.txt

View Options

tools/moltemplate/examples/CG_misc/translocation/README_visualize.txt

View Options

tools/moltemplate/examples/CG_misc/translocation/images/for_visualization/psf_file_created_by_topotools/system.psf

View Options

tools/moltemplate/examples/CG_misc/translocation/moltemplate_files/monomer.lt

View Options

tools/moltemplate/examples/CG_misc/translocation/moltemplate_files/system.lt

View Options

tools/moltemplate/examples/CG_misc/translocation/run.in.npt

View Options

tools/moltemplate/examples/CG_protein_folding_examples

View Options

tools/moltemplate/examples/CG_protein_folding_examples/1bead+chaperone

View Options

tools/moltemplate/examples/CG_protein_folding_examples/1bead+chaperone/README.TXT

View Options

tools/moltemplate/examples/CG_protein_folding_examples/1bead+chaperone/frustrated

View Options

tools/moltemplate/examples/CG_protein_folding_examples/1bead+chaperone/frustrated+chaperonin

View Options

tools/moltemplate/examples/CG_protein_folding_examples/1bead+chaperone/frustrated+chaperonin/README.TXT

View Options

tools/moltemplate/examples/CG_protein_folding_examples/1bead+chaperone/frustrated+chaperonin/README_run.sh

View Options

tools/moltemplate/examples/CG_protein_folding_examples/1bead+chaperone/frustrated+chaperonin/README_setup.sh

View Options

tools/moltemplate/examples/CG_protein_folding_examples/1bead+chaperone/frustrated+chaperonin/README_visualise.txt

View Options

tools/moltemplate/examples/CG_protein_folding_examples/1bead+chaperone/frustrated+chaperonin/images/for_visualization/psf_file_created_by_topotools/system.psf

View Options

tools/moltemplate/examples/CG_protein_folding_examples/1bead+chaperone/frustrated+chaperonin/images/misfolded+chaperonin_t=0tau_LR.jpg

View Options

tools/moltemplate/examples/CG_protein_folding_examples/1bead+chaperone/frustrated+chaperonin/images/unfolded+chaperonin_t=508750tau_LR.jpg

View Options

tools/moltemplate/examples/CG_protein_folding_examples/1bead+chaperone/frustrated+chaperonin/moltemplate_files/1beadFrustrated.lt

View Options

tools/moltemplate/examples/CG_protein_folding_examples/1bead+chaperone/frustrated+chaperonin/moltemplate_files/1beadFrustrated_variants.lt

View Options

tools/moltemplate/examples/CG_protein_folding_examples/1bead+chaperone/frustrated+chaperonin/moltemplate_files/chaperonin.lt

View Options

tools/moltemplate/examples/CG_protein_folding_examples/1bead+chaperone/frustrated+chaperonin/moltemplate_files/generate_tables/calc_chaperone_table.py

View Options

tools/moltemplate/examples/CG_protein_folding_examples/1bead+chaperone/frustrated+chaperonin/moltemplate_files/generate_tables/calc_dihedral_table.py

View Options

tools/moltemplate/examples/CG_protein_folding_examples/1bead+chaperone/frustrated+chaperonin/moltemplate_files/system.lt

View Options

tools/moltemplate/examples/CG_protein_folding_examples/1bead+chaperone/frustrated+chaperonin/moltemplate_files/table_chaperonin_h=0.475.dat

View Options

tools/moltemplate/examples/CG_protein_folding_examples/1bead+chaperone/frustrated+chaperonin/moltemplate_files/table_chaperonin_h=0.dat

View Options

tools/moltemplate/examples/CG_protein_folding_examples/1bead+chaperone/frustrated+chaperonin/moltemplate_files/table_dihedral_frustrated.dat

View Options

tools/moltemplate/examples/CG_protein_folding_examples/1bead+chaperone/frustrated+chaperonin/run.in.min

View Options

tools/moltemplate/examples/CG_protein_folding_examples/1bead+chaperone/frustrated+chaperonin/run.in.nvt

View Options

tools/moltemplate/examples/CG_protein_folding_examples/1bead+chaperone/frustrated+minichaperone

View Options

tools/moltemplate/examples/CG_protein_folding_examples/1bead+chaperone/frustrated+minichaperone/README.TXT

View Options

tools/moltemplate/examples/CG_protein_folding_examples/1bead+chaperone/frustrated+minichaperone/README_run.sh

View Options

tools/moltemplate/examples/CG_protein_folding_examples/1bead+chaperone/frustrated+minichaperone/README_setup.sh

View Options

tools/moltemplate/examples/CG_protein_folding_examples/1bead+chaperone/frustrated+minichaperone/README_visualise.txt

View Options

tools/moltemplate/examples/CG_protein_folding_examples/1bead+chaperone/frustrated+minichaperone/images/for_visualization/psf_file_created_by_topotools/system.psf

View Options

tools/moltemplate/examples/CG_protein_folding_examples/1bead+chaperone/frustrated+minichaperone/images/protein2x2x2+minichaperones2x2x2_t=0tau_LR.jpg

View Options

tools/moltemplate/examples/CG_protein_folding_examples/1bead+chaperone/frustrated+minichaperone/images/protein2x2x2+minichaperones2x2x2_t=67500tau_LR.jpg

View Options

tools/moltemplate/examples/CG_protein_folding_examples/1bead+chaperone/frustrated+minichaperone/moltemplate_files

View Options

tools/moltemplate/examples/CG_protein_folding_examples/1bead+chaperone/frustrated+minichaperone/moltemplate_files/1beadFrustrated.lt

View Options

tools/moltemplate/examples/CG_protein_folding_examples/1bead+chaperone/frustrated+minichaperone/moltemplate_files/1beadFrustrated_variants.lt

View Options

tools/moltemplate/examples/CG_protein_folding_examples/1bead+chaperone/frustrated+minichaperone/moltemplate_files/generate_tables/calc_chaperone_table.py

View Options

tools/moltemplate/examples/CG_protein_folding_examples/1bead+chaperone/frustrated+minichaperone/moltemplate_files/generate_tables/calc_dihedral_table.py

View Options

tools/moltemplate/examples/CG_protein_folding_examples/1bead+chaperone/frustrated+minichaperone/moltemplate_files/minichaperone.lt

View Options

tools/moltemplate/examples/CG_protein_folding_examples/1bead+chaperone/frustrated+minichaperone/moltemplate_files/output_ttree

View Options

tools/moltemplate/examples/CG_protein_folding_examples/1bead+chaperone/frustrated+minichaperone/moltemplate_files/output_ttree/Data Angles

View Options

tools/moltemplate/examples/CG_protein_folding_examples/1bead+chaperone/frustrated+minichaperone/moltemplate_files/output_ttree/Data Angles By Type

View Options

tools/moltemplate/examples/CG_protein_folding_examples/1bead+chaperone/frustrated+minichaperone/moltemplate_files/output_ttree/Data Angles By Type.template

View Options

tools/moltemplate/examples/CG_protein_folding_examples/1bead+chaperone/frustrated+minichaperone/moltemplate_files/output_ttree/Data Angles.template

View Options

tools/moltemplate/examples/CG_protein_folding_examples/1bead+chaperone/frustrated+minichaperone/moltemplate_files/output_ttree/Data Atoms

View Options

tools/moltemplate/examples/CG_protein_folding_examples/1bead+chaperone/frustrated+minichaperone/moltemplate_files/output_ttree/Data Atoms.template

View Options

tools/moltemplate/examples/CG_protein_folding_examples/1bead+chaperone/frustrated+minichaperone/moltemplate_files/output_ttree/Data Bonds

View Options

tools/moltemplate/examples/CG_protein_folding_examples/1bead+chaperone/frustrated+minichaperone/moltemplate_files/output_ttree/Data Bonds.template

View Options

tools/moltemplate/examples/CG_protein_folding_examples/1bead+chaperone/frustrated+minichaperone/moltemplate_files/output_ttree/Data Boundary

View Options

tools/moltemplate/examples/CG_protein_folding_examples/1bead+chaperone/frustrated+minichaperone/moltemplate_files/output_ttree/Data Boundary.template

View Options

tools/moltemplate/examples/CG_protein_folding_examples/1bead+chaperone/frustrated+minichaperone/moltemplate_files/output_ttree/Data Dihedrals

View Options

tools/moltemplate/examples/CG_protein_folding_examples/1bead+chaperone/frustrated+minichaperone/moltemplate_files/output_ttree/Data Dihedrals.template

View Options

tools/moltemplate/examples/CG_protein_folding_examples/1bead+chaperone/frustrated+minichaperone/moltemplate_files/output_ttree/Data Masses

View Options

tools/moltemplate/examples/CG_protein_folding_examples/1bead+chaperone/frustrated+minichaperone/moltemplate_files/output_ttree/Data Masses.template

View Options

tools/moltemplate/examples/CG_protein_folding_examples/1bead+chaperone/frustrated+minichaperone/moltemplate_files/output_ttree/In Init

View Options

tools/moltemplate/examples/CG_protein_folding_examples/1bead+chaperone/frustrated+minichaperone/moltemplate_files/output_ttree/In Init.template

View Options

tools/moltemplate/examples/CG_protein_folding_examples/1bead+chaperone/frustrated+minichaperone/moltemplate_files/output_ttree/In Settings

View Options

tools/moltemplate/examples/CG_protein_folding_examples/1bead+chaperone/frustrated+minichaperone/moltemplate_files/output_ttree/In Settings.template

View Options

tools/moltemplate/examples/CG_protein_folding_examples/1bead+chaperone/frustrated+minichaperone/moltemplate_files/output_ttree/ttree_assignments.txt

View Options

tools/moltemplate/examples/CG_protein_folding_examples/1bead+chaperone/frustrated+minichaperone/moltemplate_files/system.data

View Options

tools/moltemplate/examples/CG_protein_folding_examples/1bead+chaperone/frustrated+minichaperone/moltemplate_files/system.in

View Options

tools/moltemplate/examples/CG_protein_folding_examples/1bead+chaperone/frustrated+minichaperone/moltemplate_files/system.in.init

View Options

tools/moltemplate/examples/CG_protein_folding_examples/1bead+chaperone/frustrated+minichaperone/moltemplate_files/system.in.settings

View Options

tools/moltemplate/examples/CG_protein_folding_examples/1bead+chaperone/frustrated+minichaperone/moltemplate_files/system.lt

View Options

tools/moltemplate/examples/CG_protein_folding_examples/1bead+chaperone/frustrated+minichaperone/moltemplate_files/table_dihedral_frustrated.dat

View Options

tools/moltemplate/examples/CG_protein_folding_examples/1bead+chaperone/frustrated+minichaperone/moltemplate_files/table_minichaperone_h=0.6.dat

View Options

tools/moltemplate/examples/CG_protein_folding_examples/1bead+chaperone/frustrated+minichaperone/moltemplate_files/table_minichaperone_h=0.dat

View Options

tools/moltemplate/examples/CG_protein_folding_examples/1bead+chaperone/frustrated+minichaperone/run.in.min

View Options

tools/moltemplate/examples/CG_protein_folding_examples/1bead+chaperone/frustrated+minichaperone/run.in.nvt

View Options

tools/moltemplate/examples/CG_protein_folding_examples/1bead+chaperone/frustrated/README.TXT

View Options

tools/moltemplate/examples/CG_protein_folding_examples/1bead+chaperone/frustrated/README_run.sh

View Options

tools/moltemplate/examples/CG_protein_folding_examples/1bead+chaperone/frustrated/README_setup.sh

View Options

tools/moltemplate/examples/CG_protein_folding_examples/1bead+chaperone/frustrated/README_visualise.txt

View Options

tools/moltemplate/examples/CG_protein_folding_examples/1bead+chaperone/frustrated/images/for_visualization/psf_file_created_by_topotools/system.psf

View Options

tools/moltemplate/examples/CG_protein_folding_examples/1bead+chaperone/frustrated/images/initial_conformation_t=0tau.jpg

View Options

tools/moltemplate/examples/CG_protein_folding_examples/1bead+chaperone/frustrated/images/misfolded_conformation_t=1250tau.jpg

View Options

tools/moltemplate/examples/CG_protein_folding_examples/1bead+chaperone/frustrated/moltemplate_files/1beadFrustrated.lt

View Options

tools/moltemplate/examples/CG_protein_folding_examples/1bead+chaperone/frustrated/moltemplate_files/1beadFrustrated_variants.lt

View Options

tools/moltemplate/examples/CG_protein_folding_examples/1bead+chaperone/frustrated/moltemplate_files/generate_tables/calc_dihedral_table.py

View Options

tools/moltemplate/examples/CG_protein_folding_examples/1bead+chaperone/frustrated/moltemplate_files/system.lt

View Options

tools/moltemplate/examples/CG_protein_folding_examples/1bead+chaperone/frustrated/moltemplate_files/table_dihedral_frustrated.dat

View Options

tools/moltemplate/examples/CG_protein_folding_examples/1bead+chaperone/frustrated/run.in.min

View Options

tools/moltemplate/examples/CG_protein_folding_examples/1bead+chaperone/frustrated/run_short_sim.in.nvt

View Options

tools/moltemplate/examples/CG_protein_folding_examples/1bead+chaperone/unfrustrated

View Options

tools/moltemplate/examples/CG_protein_folding_examples/1bead+chaperone/unfrustrated+chaperonin

View Options

tools/moltemplate/examples/CG_protein_folding_examples/1bead+chaperone/unfrustrated+chaperonin/README.TXT

View Options

tools/moltemplate/examples/CG_protein_folding_examples/1bead+chaperone/unfrustrated+chaperonin/README_run.sh

View Options

tools/moltemplate/examples/CG_protein_folding_examples/1bead+chaperone/unfrustrated+chaperonin/README_setup.sh

View Options

tools/moltemplate/examples/CG_protein_folding_examples/1bead+chaperone/unfrustrated+chaperonin/README_visualise.txt

View Options

tools/moltemplate/examples/CG_protein_folding_examples/1bead+chaperone/unfrustrated+chaperonin/images/for_visualization/psf_file_created_by_topotools/system.psf

View Options

tools/moltemplate/examples/CG_protein_folding_examples/1bead+chaperone/unfrustrated+chaperonin/images/unfrustrated+chaperonin_t=0tau_LR.jpg

View Options

tools/moltemplate/examples/CG_protein_folding_examples/1bead+chaperone/unfrustrated+chaperonin/images/unfrustrated+chaperonin_t=105tau_LR.jpg

View Options

tools/moltemplate/examples/CG_protein_folding_examples/1bead+chaperone/unfrustrated+chaperonin/moltemplate_files/1beadUnfrustrated.lt

View Options

tools/moltemplate/examples/CG_protein_folding_examples/1bead+chaperone/unfrustrated+chaperonin/moltemplate_files/1beadUnfrustrated_variants.lt

View Options

tools/moltemplate/examples/CG_protein_folding_examples/1bead+chaperone/unfrustrated+chaperonin/moltemplate_files/chaperonin.lt

View Options

tools/moltemplate/examples/CG_protein_folding_examples/1bead+chaperone/unfrustrated+chaperonin/moltemplate_files/generate_tables/calc_chaperone_table.py

View Options

tools/moltemplate/examples/CG_protein_folding_examples/1bead+chaperone/unfrustrated+chaperonin/moltemplate_files/system.lt

View Options

tools/moltemplate/examples/CG_protein_folding_examples/1bead+chaperone/unfrustrated+chaperonin/moltemplate_files/table_chaperonin_h=0.475.dat

View Options

tools/moltemplate/examples/CG_protein_folding_examples/1bead+chaperone/unfrustrated+chaperonin/moltemplate_files/table_chaperonin_h=0.dat

View Options

tools/moltemplate/examples/CG_protein_folding_examples/1bead+chaperone/unfrustrated+chaperonin/run.in.min

View Options

tools/moltemplate/examples/CG_protein_folding_examples/1bead+chaperone/unfrustrated+chaperonin/run.in.nvt

View Options

tools/moltemplate/examples/CG_protein_folding_examples/1bead+chaperone/unfrustrated/README.TXT

View Options

tools/moltemplate/examples/CG_protein_folding_examples/1bead+chaperone/unfrustrated/README_run.sh

View Options

tools/moltemplate/examples/CG_protein_folding_examples/1bead+chaperone/unfrustrated/README_setup.sh

View Options

tools/moltemplate/examples/CG_protein_folding_examples/1bead+chaperone/unfrustrated/README_visualise.txt

View Options

tools/moltemplate/examples/CG_protein_folding_examples/1bead+chaperone/unfrustrated/images/for_visualization/psf_file_created_by_topotools/system.psf

View Options

tools/moltemplate/examples/CG_protein_folding_examples/1bead+chaperone/unfrustrated/images/unfrustrated_t=0tau_LR.jpg

View Options

tools/moltemplate/examples/CG_protein_folding_examples/1bead+chaperone/unfrustrated/images/unfrustrated_t=200tau_LR.jpg

View Options

tools/moltemplate/examples/CG_protein_folding_examples/1bead+chaperone/unfrustrated/moltemplate_files/1beadUnfrustrated.lt

View Options

tools/moltemplate/examples/CG_protein_folding_examples/1bead+chaperone/unfrustrated/moltemplate_files/1beadUnfrustrated_variants.lt

View Options

tools/moltemplate/examples/CG_protein_folding_examples/1bead+chaperone/unfrustrated/moltemplate_files/system.lt

View Options

tools/moltemplate/examples/CG_protein_folding_examples/1bead+chaperone/unfrustrated/run.in.min

View Options

tools/moltemplate/examples/CG_protein_folding_examples/1bead+chaperone/unfrustrated/run.in.nvt

View Options

tools/moltemplate/examples/CG_protein_folding_examples/1beadProtSci2010

View Options

tools/moltemplate/examples/CG_protein_folding_examples/1beadProtSci2010/README.TXT

View Options

tools/moltemplate/examples/CG_protein_folding_examples/1beadProtSci2010/README_run.sh

View Options

tools/moltemplate/examples/CG_protein_folding_examples/1beadProtSci2010/README_setup.sh

View Options

tools/moltemplate/examples/CG_protein_folding_examples/1beadProtSci2010/README_visualise.txt

View Options

tools/moltemplate/examples/CG_protein_folding_examples/1beadProtSci2010/images/4HelixBundle_t=0.jpg

View Options

tools/moltemplate/examples/CG_protein_folding_examples/1beadProtSci2010/images/4SheetBundle_t=0.jpg

View Options

tools/moltemplate/examples/CG_protein_folding_examples/1beadProtSci2010/images/for_visualization/psf_file_created_by_topotools/system.psf

View Options

tools/moltemplate/examples/CG_protein_folding_examples/1beadProtSci2010/moltemplate_files

View Options

tools/moltemplate/examples/CG_protein_folding_examples/1beadProtSci2010/moltemplate_files/1beadProtSci2010.lt

View Options

tools/moltemplate/examples/CG_protein_folding_examples/1beadProtSci2010/moltemplate_files/README.sh

View Options

tools/moltemplate/examples/CG_protein_folding_examples/1beadProtSci2010/moltemplate_files/system.lt

View Options

tools/moltemplate/examples/CG_protein_folding_examples/1beadProtSci2010/moltemplate_files/versions_with_comments

View Options

tools/moltemplate/examples/CG_protein_folding_examples/1beadProtSci2010/moltemplate_files/versions_with_comments/1beadProtSci2010.lt

View Options

tools/moltemplate/examples/CG_protein_folding_examples/1beadProtSci2010/moltemplate_files/versions_with_comments/1beadProtSci2010_charmm.lt

View Options

tools/moltemplate/examples/CG_protein_folding_examples/1beadProtSci2010/run.in.min

View Options

tools/moltemplate/examples/CG_protein_folding_examples/1beadProtSci2010/run.in.nvt

View Options

tools/moltemplate/examples/CG_solvent/cyclododecane+watMW/README_run.sh

View Options

tools/moltemplate/examples/CG_solvent/cyclododecane+watMW/README_visualise.txt

View Options

tools/moltemplate/examples/CG_solvent/cyclododecane+watMW/README_visualize.txt

View Options

tools/moltemplate/examples/CG_solvent/cyclododecane+watMW/moltemplate_files/trappe1998.lt

View Options

tools/moltemplate/examples/CG_solvent/cyclododecane+watMW/moltemplate_files/watmw.lt

View Options

tools/moltemplate/examples/CG_solvent/cyclododecane+watMW/run.in.min

View Options

tools/moltemplate/examples/CG_solvent/cyclododecane+watMW/run.in.npt

View Options

tools/moltemplate/examples/CG_solvent/cyclododecane+watMW/run.in.nvt

View Options

tools/moltemplate/examples/all_atom_examples/aluminum_crystal_strain/README.TXT

View Options

tools/moltemplate/examples/all_atom_examples/aluminum_crystal_strain/README_setup.sh

View Options

tools/moltemplate/examples/all_atom_examples/aluminum_crystal_strain/README_visualize.txt

View Options

tools/moltemplate/examples/all_atom_examples/aluminum_crystal_strain/images/AlCell_LR.jpg

View Options

tools/moltemplate/examples/all_atom_examples/aluminum_crystal_strain/images/AlCrystal10x10x10_t=0steps_LR.jpg

View Options

tools/moltemplate/examples/all_atom_examples/aluminum_crystal_strain/images/AlCrystal10x10x10_t=20000steps_LR.jpg

View Options

tools/moltemplate/examples/all_atom_examples/aluminum_crystal_strain/moltemplate_files/README.sh

View Options

tools/moltemplate/examples/all_atom_examples/aluminum_crystal_strain/moltemplate_files/al_cell.lt

View Options

tools/moltemplate/examples/all_atom_examples/aluminum_crystal_strain/moltemplate_files/system.lt

View Options

tools/moltemplate/examples/all_atom_examples/aluminum_crystal_strain/run.in

View Options

tools/moltemplate/examples/all_atom_examples/convert_LAMMPS_to_LT_examples/cnad-cnt/README.TXT

View Options

tools/moltemplate/examples/all_atom_examples/convert_LAMMPS_to_LT_examples/cnad-cnt/README_FIRST.TXT

View Options

tools/moltemplate/examples/all_atom_examples/convert_LAMMPS_to_LT_examples/cnad-cnt/README_run_lammps.sh

View Options

tools/moltemplate/examples/all_atom_examples/convert_LAMMPS_to_LT_examples/cnad-cnt/README_run_ltemplify.sh

View Options

tools/moltemplate/examples/all_atom_examples/convert_LAMMPS_to_LT_examples/cnad-cnt/README_run_moltemplate.sh

View Options

tools/moltemplate/examples/all_atom_examples/convert_LAMMPS_to_LT_examples/cnad-cnt/README_visualise.txt

View Options

tools/moltemplate/examples/all_atom_examples/convert_LAMMPS_to_LT_examples/cnad-cnt/README_visualize.txt

View Options

tools/moltemplate/examples/all_atom_examples/heteropolymer_melt_attempt1

View Options

tools/moltemplate/examples/all_atom_examples/heteropolymer_melt_attempt1/README.TXT

View Options

tools/moltemplate/examples/all_atom_examples/heteropolymer_melt_attempt1/README_run.sh

View Options

tools/moltemplate/examples/all_atom_examples/heteropolymer_melt_attempt1/README_setup.sh

View Options

tools/moltemplate/examples/all_atom_examples/heteropolymer_melt_attempt1/README_visualise.txt

View Options

tools/moltemplate/examples/all_atom_examples/heteropolymer_melt_attempt1/images

View Options

tools/moltemplate/examples/all_atom_examples/heteropolymer_melt_attempt1/images/zoom1_rainbow_t=0ps_LR.jpg

View Options

tools/moltemplate/examples/all_atom_examples/heteropolymer_melt_attempt1/images/zoom2_rainbow_t=0ps_LR.jpg

View Options

tools/moltemplate/examples/all_atom_examples/heteropolymer_melt_attempt1/images/zoom2_rainbow_t=10ps_LR.jpg

View Options

tools/moltemplate/examples/all_atom_examples/heteropolymer_melt_attempt1/images/zoom2_rainbow_t=20ps_LR.jpg

View Options

tools/moltemplate/examples/all_atom_examples/heteropolymer_melt_attempt1/images/zoom2_rainbow_t=40ps_LR.jpg

View Options

tools/moltemplate/examples/all_atom_examples/heteropolymer_melt_attempt1/images/zoom2_rainbow_t=4ps_LR.jpg

View Options

tools/moltemplate/examples/all_atom_examples/heteropolymer_melt_attempt1/images/zoom2_rainbow_t=60ps_LR.jpg

View Options

tools/moltemplate/examples/all_atom_examples/heteropolymer_melt_attempt1/images/zoom2_rainbow_t=80ps_LR.jpg

View Options

tools/moltemplate/examples/all_atom_examples/heteropolymer_melt_attempt1/images/zoom3_rainbow_t=10ps_LR.jpg

View Options

tools/moltemplate/examples/all_atom_examples/heteropolymer_melt_attempt1/images/zoom3_rainbow_t=20ps_LR.jpg

View Options

tools/moltemplate/examples/all_atom_examples/heteropolymer_melt_attempt1/images/zoom3_rainbow_t=40ps_LR.jpg

View Options

tools/moltemplate/examples/all_atom_examples/heteropolymer_melt_attempt1/images/zoom3_rainbow_t=4ps_LR.jpg

View Options

tools/moltemplate/examples/all_atom_examples/heteropolymer_melt_attempt1/images/zoom3_rainbow_t=60ps_LR.jpg

View Options

tools/moltemplate/examples/all_atom_examples/heteropolymer_melt_attempt1/images/zoom3_rainbow_t=80ps_LR.jpg

View Options

tools/moltemplate/examples/all_atom_examples/heteropolymer_melt_attempt1/moltemplate_files

View Options

tools/moltemplate/examples/all_atom_examples/heteropolymer_melt_attempt1/moltemplate_files/monomers.lt

View Options

tools/moltemplate/examples/all_atom_examples/heteropolymer_melt_attempt1/moltemplate_files/polymer.lt

View Options

tools/moltemplate/examples/all_atom_examples/heteropolymer_melt_attempt1/moltemplate_files/system.lt

View Options

tools/moltemplate/examples/all_atom_examples/heteropolymer_melt_attempt1/run.in.npt

View Options

tools/moltemplate/examples/all_atom_examples/heteropolymer_melt_attempt1/run.in.nvt

View Options

tools/moltemplate/examples/all_atom_examples/ice_crystal/README_run.sh

View Options

tools/moltemplate/examples/all_atom_examples/ice_crystal/README_setup.sh

View Options

tools/moltemplate/examples/all_atom_examples/ice_crystal/README_visualize.txt

View Options

tools/moltemplate/examples/all_atom_examples/ice_crystal/images/ice_rect8_crystal_3x2x2_LR.jpg

View Options

tools/moltemplate/examples/all_atom_examples/ice_crystal/moltemplate_files/spce.lt

View Options

tools/moltemplate/examples/all_atom_examples/ice_crystal/moltemplate_files/spce_ice_rect8.lt

View Options

tools/moltemplate/examples/all_atom_examples/ice_crystal/moltemplate_files/system.lt

View Options

tools/moltemplate/examples/all_atom_examples/ice_crystal/run.in.npt

View Options

tools/moltemplate/examples/all_atom_examples/ice_crystal/run.in.nvt

View Options

tools/moltemplate/examples/all_atom_examples/nanotube+water/README.TXT

View Options

tools/moltemplate/examples/all_atom_examples/nanotube+water/README_run.sh

View Options

tools/moltemplate/examples/all_atom_examples/nanotube+water/README_visualise.txt

View Options

tools/moltemplate/examples/all_atom_examples/nanotube+water/README_visualize.txt

View Options

tools/moltemplate/examples/all_atom_examples/nanotube+water/images/for_visualization/psf_file_created_by_topotools/system.psf

View Options

tools/moltemplate/examples/all_atom_examples/nanotube+water/moltemplate_files/graphene.lt

View Options

tools/moltemplate/examples/all_atom_examples/nanotube+water/moltemplate_files/graphene_walls.lt

View Options

tools/moltemplate/examples/all_atom_examples/nanotube+water/moltemplate_files/nanotube.lt

View Options

tools/moltemplate/examples/all_atom_examples/nanotube+water/moltemplate_files/system.lt

View Options

tools/moltemplate/examples/all_atom_examples/nanotube+water/moltemplate_files/water_box.lt

View Options

tools/moltemplate/examples/all_atom_examples/nanotube+water/run.in.npt

View Options

tools/moltemplate/examples/all_atom_examples/nanotube+water/run.in.nvt

View Options

tools/moltemplate/examples/all_atom_examples/read_PDB_file_examples/waterSPCE_from_PDBfile/README_run.sh

View Options

tools/moltemplate/examples/all_atom_examples/read_PDB_file_examples/waterSPCE_from_PDBfile/for_visualization

View Options

tools/moltemplate/examples/all_atom_examples/read_PDB_file_examples/waterSPCE_from_PDBfile/for_visualization/psf_file_created_by_topotools

View Options

tools/moltemplate/examples/all_atom_examples/read_PDB_file_examples/waterSPCE_from_PDBfile/for_visualization/psf_file_created_by_topotools/system.psf

View Options

tools/moltemplate/examples/all_atom_examples/read_PDB_file_examples/waterSPCE_from_PDBfile/moltemplate_files/spce.lt

View Options

tools/moltemplate/examples/all_atom_examples/read_PDB_file_examples/waterSPCE_from_PDBfile/run.in.min

View Options

tools/moltemplate/examples/all_atom_examples/read_PDB_file_examples/waterSPCE_from_PDBfile/run.in.npt

View Options

tools/moltemplate/examples/all_atom_examples/read_PDB_file_examples/waterSPCE_from_PDBfile/run.in.nvt

View Options

tools/moltemplate/examples/all_atom_examples/waterSPCE+Na+Cl/README_run.sh

View Options

tools/moltemplate/examples/all_atom_examples/waterSPCE+Na+Cl/README_visualise.txt

View Options

tools/moltemplate/examples/all_atom_examples/waterSPCE+Na+Cl/README_visualize.txt

View Options

tools/moltemplate/examples/all_atom_examples/waterSPCE+Na+Cl/moltemplate_files/ions.lt

View Options

tools/moltemplate/examples/all_atom_examples/waterSPCE+Na+Cl/moltemplate_files/spce.lt

View Options

tools/moltemplate/examples/all_atom_examples/waterSPCE+Na+Cl/moltemplate_files/system.lt

View Options

tools/moltemplate/examples/all_atom_examples/waterSPCE+Na+Cl/run.in.min

View Options

tools/moltemplate/examples/all_atom_examples/waterSPCE+Na+Cl/run.in.npt

View Options

tools/moltemplate/examples/all_atom_examples/waterSPCE+Na+Cl/run.in.nvt

View Options

tools/moltemplate/examples/silly/pyramids_vs_gravity/README.TXT

View Options

tools/moltemplate/examples/silly/pyramids_vs_gravity/README_VMD_graphene.txt

View Options

tools/moltemplate/examples/silly/pyramids_vs_gravity/README_setup.sh

View Options

tools/moltemplate/examples/silly/pyramids_vs_gravity/README_visualize.txt

View Options

tools/moltemplate/examples/silly/pyramids_vs_gravity/images/pyramids_vs_gravity_t=04800steps_LR.jpg

View Options

tools/moltemplate/examples/silly/pyramids_vs_gravity/images/pyramids_vs_gravity_t=12200steps_LR.jpg

View Options

tools/moltemplate/examples/silly/pyramids_vs_gravity/images/pyramids_vs_gravity_t=33000steps_LR.jpg

View Options

tools/moltemplate/examples/silly/pyramids_vs_gravity/moltemplate_files/README.sh

View Options

tools/moltemplate/examples/silly/pyramids_vs_gravity/moltemplate_files/graphene.lt

View Options

tools/moltemplate/examples/silly/pyramids_vs_gravity/moltemplate_files/graphene_wall.lt

View Options

tools/moltemplate/examples/silly/pyramids_vs_gravity/moltemplate_files/pyramids.lt

View Options

tools/moltemplate/examples/silly/pyramids_vs_gravity/moltemplate_files/system.lt

View Options

tools/moltemplate/examples/silly/pyramids_vs_gravity/run.in

View Options

tools/moltemplate/examples/silly/sierpinski/README.TXT

View Options

tools/moltemplate/examples/silly/sierpinski/README_setup.sh

View Options

tools/moltemplate/examples/silly/sierpinski/README_visualize.txt

View Options

tools/moltemplate/examples/silly/sierpinski/images/AlCell_LR.jpg

View Options

tools/moltemplate/examples/silly/sierpinski/images/lvl1_LR.jpg

View Options

tools/moltemplate/examples/silly/sierpinski/images/lvl2_LR.jpg

View Options

tools/moltemplate/examples/silly/sierpinski/images/lvl3_LR.jpg

View Options

tools/moltemplate/examples/silly/sierpinski/images/serpinski_cube_lattice_8cells_t=0_zoom1_LR2.jpg

View Options

tools/moltemplate/examples/silly/sierpinski/images/serpinski_cube_lattice_8cells_t=7400_LR.jpg

View Options

tools/moltemplate/examples/silly/sierpinski/moltemplate_files/al_cell.lt

View Options

tools/moltemplate/examples/silly/sierpinski/moltemplate_files/elegant_inefficient_version/al_cell.lt

View Options

tools/moltemplate/examples/silly/sierpinski/moltemplate_files/elegant_inefficient_version/sierpinski_cubes.lt

View Options

tools/moltemplate/examples/silly/sierpinski/moltemplate_files/elegant_inefficient_version/system.lt

View Options

tools/moltemplate/examples/silly/sierpinski/moltemplate_files/sierpinski_cubes.lt

View Options

tools/moltemplate/examples/silly/sierpinski/moltemplate_files/system.lt

View Options

tools/moltemplate/examples/silly/sierpinski/run.in

View Options

tools/moltemplate/moltemplate_manual.pdf

View Options

tools/moltemplate/src/ltemplify.py

View Options

tools/moltemplate/src/lttree.py

View Options

tools/moltemplate/src/lttree_check.py

View Options

tools/moltemplate/src/lttree_missing_coeffs.py

View Options

tools/moltemplate/src/lttree_postprocess.py

View Options

tools/moltemplate/src/moltemplate.sh

View Options

tools/moltemplate/src/nbody_Bonds.py

View Options

tools/moltemplate/src/nbody_by_type.py

View Options

tools/moltemplate/src/nbody_fix_ttree_assignments.py

View Options

tools/moltemplate/src/nbody_reorder_atoms.py

View Options

tools/moltemplate/src/ordereddict.py

View Options

tools/moltemplate/src/renumber_DATA_first_column.py

View Options

tools/moltemplate/src/ttree.py

View Options

tools/moltemplate/src/ttree_render.py

c4science · Help