Diffusion lammps c9c2ae6c6134

new neighbor list changes
c9c2ae6c6134
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Authored by Steve Plimpton <sjplimp@sandia.gov> on Sep 7 2016, 21:42.

Description

new neighbor list changes

Details

Committed

Steve Plimpton <sjplimp@sandia.gov>

Sep 7 2016, 21:42

Pushed

junge

Oct 19 2017, 09:53

Parents

rLAMMPS0252347d43c5: sync with 7Sep16 patch

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Steve Plimpton <sjplimp@sandia.gov> committed rLAMMPSc9c2ae6c6134: new neighbor list changes (authored by Steve Plimpton <sjplimp@sandia.gov>).Sep 7 2016, 21:42

Diffusion mentioned this in rLAMMPS32c240978aa3: USER-DPD: remove several files from src that came from src/USER-DPD/ These were….Oct 19 2017, 09:55

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				Path
	M			src/Make.sh
	M			src/Purge.list
	P			src/USER-DPD/#npair_half_bin_newton_ssa.cpp# Copied from src/neigh_shardlow.cpp
	M			src/USER-DPD/fix_shardlow.cpp
	P			src/USER-DPD/npair_half_bin_newton_ssa.cpp Copied from src/neigh_shardlow.cpp
	P			src/USER-DPD/npair_half_bin_newton_ssa.h Copied from src/neigh_gran.h
	A			src/USER-DPD/npair_halffull_newton_ssa.cpp
	P			src/USER-DPD/npair_halffull_newton_ssa.h Copied from src/neigh_gran.h
	A			src/USER-DPD/nstencil_half_bin_2d_newton_ssa.cpp
	P			src/USER-DPD/nstencil_half_bin_2d_newton_ssa.h Copied from src/neigh_gran.h
	A			src/USER-DPD/nstencil_half_bin_3d_newton_ssa.cpp
	P			src/USER-DPD/nstencil_half_bin_3d_newton_ssa.h Copied from src/neigh_gran.h
	M			src/USER-INTEL/Install.sh
	M			src/USER-INTEL/fix_intel.cpp
	M			src/USER-INTEL/intel_buffers.cpp
	M			src/USER-INTEL/intel_buffers.h
	A			src/USER-INTEL/nbin_intel.cpp
	A			src/USER-INTEL/nbin_intel.h
	D			src/USER-INTEL/neigh_half_bin_intel.cpp
	A			src/USER-INTEL/npair_full_bin_intel.cpp
	A			src/USER-INTEL/npair_full_bin_intel.h
	A			src/USER-INTEL/npair_half_bin_newtoff_intel.cpp
	A			src/USER-INTEL/npair_half_bin_newtoff_intel.h
	A			src/USER-INTEL/npair_half_bin_newton_intel.cpp
	A			src/USER-INTEL/npair_half_bin_newton_intel.h
	A			src/USER-INTEL/npair_half_bin_newton_tri_intel.cpp
	A			src/USER-INTEL/npair_half_bin_newton_tri_intel.h
	A			src/USER-INTEL/npair_intel.cpp
	A			src/USER-INTEL/npair_intel.h
	P			src/USER-OMP/neigh_derive_omp.cpp Deleted after being copied to multiple locations: src/USER-OMP/npair_halffull_newtoff_omp.cpp src/USER-OMP/npair_halffull_newton_omp.cpp src/npair_halffull_newton.cpp
	D			src/USER-OMP/neigh_full_omp.cpp
	D			src/USER-OMP/neigh_gran_omp.cpp
	D			src/USER-OMP/neigh_half_bin_omp.cpp
	D			src/USER-OMP/neigh_half_multi_omp.cpp
	D			src/USER-OMP/neigh_half_nsq_omp.cpp
	D			src/USER-OMP/neigh_respa_omp.cpp
	V			src/USER-OMP/{neighbor_omp.h → npair_omp.h}
	A			src/USER-OMP/npair_full_bin_ghost_omp.cpp
	P			src/USER-OMP/npair_full_bin_ghost_omp.h Copied from src/neigh_gran.h
	A			src/USER-OMP/npair_full_bin_omp.cpp
	P			src/USER-OMP/npair_full_bin_omp.h Copied from src/neigh_gran.h
	A			src/USER-OMP/npair_full_multi_omp.cpp
	P			src/USER-OMP/npair_full_multi_omp.h Copied from src/neigh_gran.h
	A			src/USER-OMP/npair_full_nsq_ghost_omp.cpp
	P			src/USER-OMP/npair_full_nsq_ghost_omp.h Copied from src/neigh_gran.h
	A			src/USER-OMP/npair_full_nsq_omp.cpp
	P			src/USER-OMP/npair_full_nsq_omp.h Copied from src/neigh_gran.h
	A			src/USER-OMP/npair_half_bin_newtoff_ghost_omp.cpp
	P			src/USER-OMP/npair_half_bin_newtoff_ghost_omp.h Copied from src/neigh_full.h
	A			src/USER-OMP/npair_half_bin_newtoff_omp.cpp
	P			src/USER-OMP/npair_half_bin_newtoff_omp.h Copied from src/neigh_gran.h
	A			src/USER-OMP/npair_half_bin_newton_omp.cpp
	P			src/USER-OMP/npair_half_bin_newton_omp.h Copied from src/neigh_gran.h
	A			src/USER-OMP/npair_half_bin_newton_tri_omp.cpp
	P			src/USER-OMP/npair_half_bin_newton_tri_omp.h Copied from src/neigh_gran.h
	A			src/USER-OMP/npair_half_multi_newtoff_omp.cpp
	P			src/USER-OMP/npair_half_multi_newtoff_omp.h Copied from src/neigh_gran.h
	A			src/USER-OMP/npair_half_multi_newton_omp.cpp
	P			src/USER-OMP/npair_half_multi_newton_omp.h Copied from src/neigh_gran.h
	A			src/USER-OMP/npair_half_multi_newton_tri_omp.cpp
	P			src/USER-OMP/npair_half_multi_newton_tri_omp.h Copied from src/neigh_gran.h
	A			src/USER-OMP/npair_half_nsq_newtoff_ghost_omp.cpp
	P			src/USER-OMP/npair_half_nsq_newtoff_ghost_omp.h Copied from src/neigh_full.h
	A			src/USER-OMP/npair_half_nsq_newtoff_omp.cpp
	P			src/USER-OMP/npair_half_nsq_newtoff_omp.h Copied from src/neigh_gran.h
	A			src/USER-OMP/npair_half_nsq_newton_omp.cpp
	P			src/USER-OMP/npair_half_nsq_newton_omp.h Copied from src/neigh_gran.h
	A			src/USER-OMP/npair_half_respa_bin_newtoff_omp.cpp
	P			src/USER-OMP/npair_half_respa_bin_newtoff_omp.h Copied from src/neigh_full.h
	A			src/USER-OMP/npair_half_respa_bin_newton_omp.cpp
	P			src/USER-OMP/npair_half_respa_bin_newton_omp.h Copied from src/neigh_gran.h
	A			src/USER-OMP/npair_half_respa_bin_newton_tri_omp.cpp
	P			src/USER-OMP/npair_half_respa_bin_newton_tri_omp.h Copied from src/neigh_full.h
	A			src/USER-OMP/npair_half_respa_nsq_newtoff_omp.cpp
	P			src/USER-OMP/npair_half_respa_nsq_newtoff_omp.h Copied from src/neigh_full.h
	A			src/USER-OMP/npair_half_respa_nsq_newton_omp.cpp
	P			src/USER-OMP/npair_half_respa_nsq_newton_omp.h Copied from src/neigh_full.h
	A			src/USER-OMP/npair_half_size_bin_newtoff_omp.cpp
	P			src/USER-OMP/npair_half_size_bin_newtoff_omp.h Copied from src/neigh_full.h
	A			src/USER-OMP/npair_half_size_bin_newton_omp.cpp
	P			src/USER-OMP/npair_half_size_bin_newton_omp.h Copied from src/neigh_gran.h
	A			src/USER-OMP/npair_half_size_bin_newton_tri_omp.cpp
	P			src/USER-OMP/npair_half_size_bin_newton_tri_omp.h Copied from src/neigh_full.h
	A			src/USER-OMP/npair_half_size_nsq_newtoff_omp.cpp
	P			src/USER-OMP/npair_half_size_nsq_newtoff_omp.h Copied from src/neigh_full.h
	A			src/USER-OMP/npair_half_size_nsq_newton_omp.cpp
	P			src/USER-OMP/npair_half_size_nsq_newton_omp.h Copied from src/neigh_full.h
	P			src/USER-OMP/npair_halffull_newtoff_omp.cpp Copied from src/USER-OMP/neigh_derive_omp.cpp
	P			src/USER-OMP/npair_halffull_newtoff_omp.h Copied from src/neigh_full.h
	P			src/USER-OMP/npair_halffull_newton_omp.cpp Copied from src/USER-OMP/neigh_derive_omp.cpp
	P			src/USER-OMP/npair_halffull_newton_omp.h Copied from src/neigh_gran.h
	V			src/USER-OMP/{npair_omp.h ← neighbor_omp.h}
	D			src/accelerator_intel.h
	A			src/nbin.cpp
	A			src/nbin.h
	A			src/nbin_standard.cpp
	P			src/nbin_standard.h Copied from src/neigh_half_bin.h
	D			src/neigh_bond.cpp
	D			src/neigh_bond.h
	D			src/neigh_derive.cpp
	V			src/{neigh_derive.h → ntopo_angle_all.h}
	D			src/neigh_full.cpp
	P			src/neigh_full.h Deleted after being copied to multiple locations: src/USER-OMP/npair_half_bin_newtoff_ghost_omp.h src/USER-OMP/npair_half_nsq_newtoff_ghost_omp.h src/USER-OMP/npair_half_respa_bin_newtoff_omp.h src/USER-OMP/npair_half_respa_bin_newton_tri_omp.h src/USER-OMP/npair_half_respa_nsq_newtoff_omp.h src/USER-OMP/npair_half_respa_nsq_newton_omp.h src/USER-OMP/npair_half_size_bin_newtoff_omp.h src/USER-OMP/npair_half_size_bin_newton_tri_omp.h src/USER-OMP/npair_half_size_nsq_newtoff_omp.h src/USER-OMP/npair_half_size_nsq_newton_omp.h src/USER-OMP/npair_halffull_newtoff_omp.h src/npair_copy.h src/npair_skip_size_off2on.h src/npair_skip_size_off2on_oneside.h src/nstencil_full_ghost_bin_2d.h src/nstencil_full_ghost_bin_3d.h src/nstencil_half_ghost_bin_2d_newtoff.h src/nstencil_half_ghost_bin_3d_newtoff.h
	D			src/neigh_gran.cpp
	P			src/neigh_gran.h Deleted after being copied to multiple locations: src/USER-DPD/npair_half_bin_newton_ssa.h src/USER-DPD/npair_halffull_newton_ssa.h src/USER-DPD/nstencil_half_bin_2d_newton_ssa.h src/USER-DPD/nstencil_half_bin_3d_newton_ssa.h src/USER-OMP/npair_full_bin_ghost_omp.h src/USER-OMP/npair_full_bin_omp.h src/USER-OMP/npair_full_multi_omp.h src/USER-OMP/npair_full_nsq_ghost_omp.h src/USER-OMP/npair_full_nsq_omp.h src/USER-OMP/npair_half_bin_newtoff_omp.h src/USER-OMP/npair_half_bin_newton_omp.h src/USER-OMP/npair_half_bin_newton_tri_omp.h src/USER-OMP/npair_half_multi_newtoff_omp.h src/USER-OMP/npair_half_multi_newton_omp.h src/USER-OMP/npair_half_multi_newton_tri_omp.h src/USER-OMP/npair_half_nsq_newtoff_omp.h src/USER-OMP/npair_half_nsq_newton_omp.h src/USER-OMP/npair_half_respa_bin_newton_omp.h src/USER-OMP/npair_half_size_bin_newton_omp.h src/USER-OMP/npair_halffull_newton_omp.h src/npair_full_bin.h src/npair_full_bin_ghost.h src/npair_full_multi.h src/npair_full_nsq.h src/npair_full_nsq_ghost.h src/npair_half_bin_newtoff.h src/npair_half_bin_newtoff_ghost.h src/npair_half_bin_newton.h src/npair_half_bin_newton_ssa.h src/npair_half_bin_newton_tri.h src/npair_half_multi_newtoff.h src/npair_half_multi_newton.h src/npair_half_multi_newton_tri.h src/npair_half_nsq_newtoff.h src/npair_half_nsq_newtoff_ghost.h src/npair_half_nsq_newton.h src/npair_half_respa_bin_newtoff.h src/npair_half_respa_bin_newton.h src/npair_half_respa_bin_newton_tri.h src/npair_half_respa_nsq_newtoff.h src/npair_half_respa_nsq_newton.h src/npair_half_size_bin_newtoff.h src/npair_half_size_bin_newton.h src/npair_half_size_bin_newton_tri.h src/npair_half_size_nsq_newtoff.h src/npair_half_size_nsq_newton.h src/npair_halffull_newtoff.h src/npair_halffull_newton.h src/npair_halffull_newton_ssa.h src/npair_skip.h src/npair_skip_respa.h src/npair_skip_size.h src/nstencil_full_bin_2d.h src/nstencil_full_bin_3d.h src/nstencil_full_multi_2d.h src/nstencil_full_multi_3d.h src/nstencil_half_bin_2d_newtoff.h src/nstencil_half_bin_2d_newton.h src/nstencil_half_bin_2d_newton_ssa.h src/nstencil_half_bin_2d_newton_tri.h src/nstencil_half_bin_3d_newtoff.h src/nstencil_half_bin_3d_newton.h src/nstencil_half_bin_3d_newton_ssa.h src/nstencil_half_bin_3d_newton_tri.h src/nstencil_half_multi_2d_newtoff.h src/nstencil_half_multi_2d_newton.h src/nstencil_half_multi_2d_newton_tri.h src/nstencil_half_multi_3d_newtoff.h src/nstencil_half_multi_3d_newton.h src/nstencil_half_multi_3d_newton_tri.h src/ntopo_bond_partial.h
	D			src/neigh_half_bin.cpp
	P			src/neigh_half_bin.h Deleted after being copied to multiple locations: src/nbin_standard.h src/ntopo_angle_partial.h src/ntopo_angle_template.h src/ntopo_bond_all.h src/ntopo_bond_template.h src/ntopo_dihedral_all.h src/ntopo_dihedral_partial.h src/ntopo_dihedral_template.h src/ntopo_improper_all.h src/ntopo_improper_partial.h src/ntopo_improper_template.h
	D			src/neigh_half_multi.cpp
	D			src/neigh_half_multi.h
	D			src/neigh_half_nsq.cpp
	D			src/neigh_half_nsq.h
	M			src/neigh_list.cpp
	M			src/neigh_list.h
	M			src/neigh_request.cpp
	M			src/neigh_request.h
	D			src/neigh_respa.cpp
	D			src/neigh_respa.h
	P			src/neigh_shardlow.cpp Deleted after being copied to multiple locations: src/USER-DPD/#npair_half_bin_newton_ssa.cpp# src/USER-DPD/npair_half_bin_newton_ssa.cpp src/npair_half_bin_newton_ssa.cpp
	D			src/neigh_shardlow.h
	D			src/neigh_stencil.cpp
	M			src/neighbor.cpp
	M			src/neighbor.h
	A			src/npair.cpp
	A			src/npair.h
	A			src/npair_copy.cpp
	P			src/npair_copy.h Copied from src/neigh_full.h
	A			src/npair_full_bin.cpp
	P			src/npair_full_bin.h Copied from src/neigh_gran.h
	A			src/npair_full_bin_ghost.cpp
	P			src/npair_full_bin_ghost.h Copied from src/neigh_gran.h
	A			src/npair_full_multi.cpp
	P			src/npair_full_multi.h Copied from src/neigh_gran.h
	A			src/npair_full_nsq.cpp
	P			src/npair_full_nsq.h Copied from src/neigh_gran.h
	A			src/npair_full_nsq_ghost.cpp
	P			src/npair_full_nsq_ghost.h Copied from src/neigh_gran.h
	A			src/npair_half_bin_newtoff.cpp
	P			src/npair_half_bin_newtoff.h Copied from src/neigh_gran.h
	A			src/npair_half_bin_newtoff_ghost.cpp
	P			src/npair_half_bin_newtoff_ghost.h Copied from src/neigh_gran.h
	A			src/npair_half_bin_newton.cpp
	P			src/npair_half_bin_newton.h Copied from src/neigh_gran.h
	V			src/{npair_half_bin_newton_ssa.cpp ← neigh_shardlow.cpp}
	P			src/npair_half_bin_newton_ssa.h Copied from src/neigh_gran.h
	A			src/npair_half_bin_newton_tri.cpp
	P			src/npair_half_bin_newton_tri.h Copied from src/neigh_gran.h
	A			src/npair_half_multi_newtoff.cpp
	P			src/npair_half_multi_newtoff.h Copied from src/neigh_gran.h
	A			src/npair_half_multi_newton.cpp
	P			src/npair_half_multi_newton.h Copied from src/neigh_gran.h
	A			src/npair_half_multi_newton_tri.cpp
	P			src/npair_half_multi_newton_tri.h Copied from src/neigh_gran.h
	A			src/npair_half_nsq_newtoff.cpp
	P			src/npair_half_nsq_newtoff.h Copied from src/neigh_gran.h
	A			src/npair_half_nsq_newtoff_ghost.cpp
	P			src/npair_half_nsq_newtoff_ghost.h Copied from src/neigh_gran.h
	A			src/npair_half_nsq_newton.cpp
	P			src/npair_half_nsq_newton.h Copied from src/neigh_gran.h
	A			src/npair_half_respa_bin_newtoff.cpp
	P			src/npair_half_respa_bin_newtoff.h Copied from src/neigh_gran.h
	A			src/npair_half_respa_bin_newton.cpp
	P			src/npair_half_respa_bin_newton.h Copied from src/neigh_gran.h
	A			src/npair_half_respa_bin_newton_tri.cpp
	P			src/npair_half_respa_bin_newton_tri.h Copied from src/neigh_gran.h
	A			src/npair_half_respa_nsq_newtoff.cpp
	P			src/npair_half_respa_nsq_newtoff.h Copied from src/neigh_gran.h
	A			src/npair_half_respa_nsq_newton.cpp
	P			src/npair_half_respa_nsq_newton.h Copied from src/neigh_gran.h
	A			src/npair_half_size_bin_newtoff.cpp
	P			src/npair_half_size_bin_newtoff.h Copied from src/neigh_gran.h
	A			src/npair_half_size_bin_newton.cpp
	P			src/npair_half_size_bin_newton.h Copied from src/neigh_gran.h
	A			src/npair_half_size_bin_newton_tri.cpp
	P			src/npair_half_size_bin_newton_tri.h Copied from src/neigh_gran.h
	A			src/npair_half_size_nsq_newtoff.cpp
	P			src/npair_half_size_nsq_newtoff.h Copied from src/neigh_gran.h
	A			src/npair_half_size_nsq_newton.cpp
	P			src/npair_half_size_nsq_newton.h Copied from src/neigh_gran.h
	A			src/npair_halffull_newtoff.cpp
	P			src/npair_halffull_newtoff.h Copied from src/neigh_gran.h
	V			src/{npair_halffull_newton.cpp ← USER-OMP/neigh_derive_omp.cpp}
	P			src/npair_halffull_newton.h Copied from src/neigh_gran.h
	A			src/npair_halffull_newton_ssa.cpp
	P			src/npair_halffull_newton_ssa.h Copied from src/neigh_gran.h
	A			src/npair_skip.cpp
	P			src/npair_skip.h Copied from src/neigh_gran.h
	A			src/npair_skip_respa.cpp
	P			src/npair_skip_respa.h Copied from src/neigh_gran.h
	A			src/npair_skip_size.cpp
	P			src/npair_skip_size.h Copied from src/neigh_gran.h
	A			src/npair_skip_size_off2on.cpp
	P			src/npair_skip_size_off2on.h Copied from src/neigh_full.h
	A			src/npair_skip_size_off2on_oneside.cpp
	P			src/npair_skip_size_off2on_oneside.h Copied from src/neigh_full.h
	A			src/nstencil.cpp
	A			src/nstencil.h
	A			src/nstencil_full_bin_2d.cpp
	P			src/nstencil_full_bin_2d.h Copied from src/neigh_gran.h
	A			src/nstencil_full_bin_3d.cpp
	P			src/nstencil_full_bin_3d.h Copied from src/neigh_gran.h
	A			src/nstencil_full_ghost_bin_2d.cpp
	P			src/nstencil_full_ghost_bin_2d.h Copied from src/neigh_full.h
	A			src/nstencil_full_ghost_bin_3d.cpp
	P			src/nstencil_full_ghost_bin_3d.h Copied from src/neigh_full.h
	A			src/nstencil_full_multi_2d.cpp
	P			src/nstencil_full_multi_2d.h Copied from src/neigh_gran.h
	A			src/nstencil_full_multi_3d.cpp
	P			src/nstencil_full_multi_3d.h Copied from src/neigh_gran.h
	A			src/nstencil_half_bin_2d_newtoff.cpp
	P			src/nstencil_half_bin_2d_newtoff.h Copied from src/neigh_gran.h
	A			src/nstencil_half_bin_2d_newton.cpp
	P			src/nstencil_half_bin_2d_newton.h Copied from src/neigh_gran.h
	A			src/nstencil_half_bin_2d_newton_ssa.cpp
	P			src/nstencil_half_bin_2d_newton_ssa.h Copied from src/neigh_gran.h
	A			src/nstencil_half_bin_2d_newton_tri.cpp
	P			src/nstencil_half_bin_2d_newton_tri.h Copied from src/neigh_gran.h
	A			src/nstencil_half_bin_3d_newtoff.cpp
	P			src/nstencil_half_bin_3d_newtoff.h Copied from src/neigh_gran.h
	A			src/nstencil_half_bin_3d_newton.cpp
	P			src/nstencil_half_bin_3d_newton.h Copied from src/neigh_gran.h
	A			src/nstencil_half_bin_3d_newton_ssa.cpp
	P			src/nstencil_half_bin_3d_newton_ssa.h Copied from src/neigh_gran.h
	A			src/nstencil_half_bin_3d_newton_tri.cpp
	P			src/nstencil_half_bin_3d_newton_tri.h Copied from src/neigh_gran.h
	A			src/nstencil_half_ghost_bin_2d_newtoff.cpp
	P			src/nstencil_half_ghost_bin_2d_newtoff.h Copied from src/neigh_full.h
	A			src/nstencil_half_ghost_bin_3d_newtoff.cpp
	V			src/{nstencil_half_ghost_bin_3d_newtoff.h ← neigh_full.h}
	A			src/nstencil_half_multi_2d_newtoff.cpp
	P			src/nstencil_half_multi_2d_newtoff.h Copied from src/neigh_gran.h
	A			src/nstencil_half_multi_2d_newton.cpp
	P			src/nstencil_half_multi_2d_newton.h Copied from src/neigh_gran.h
	A			src/nstencil_half_multi_2d_newton_tri.cpp
	P			src/nstencil_half_multi_2d_newton_tri.h Copied from src/neigh_gran.h
	A			src/nstencil_half_multi_3d_newtoff.cpp
	P			src/nstencil_half_multi_3d_newtoff.h Copied from src/neigh_gran.h
	A			src/nstencil_half_multi_3d_newton.cpp
	P			src/nstencil_half_multi_3d_newton.h Copied from src/neigh_gran.h
	A			src/nstencil_half_multi_3d_newton_tri.cpp
	P			src/nstencil_half_multi_3d_newton_tri.h Copied from src/neigh_gran.h
	A			src/ntopo.cpp
	A			src/ntopo.h
	A			src/ntopo_angle_all.cpp
	V			src/{ntopo_angle_all.h ← neigh_derive.h}
	A			src/ntopo_angle_partial.cpp
	P			src/ntopo_angle_partial.h Copied from src/neigh_half_bin.h
	A			src/ntopo_angle_template.cpp
	P			src/ntopo_angle_template.h Copied from src/neigh_half_bin.h
	A			src/ntopo_bond_all.cpp
	P			src/ntopo_bond_all.h Copied from src/neigh_half_bin.h
	A			src/ntopo_bond_partial.cpp
	V			src/{ntopo_bond_partial.h ← neigh_gran.h}
	A			src/ntopo_bond_template.cpp
	P			src/ntopo_bond_template.h Copied from src/neigh_half_bin.h
	A			src/ntopo_dihedral_all.cpp
	P			src/ntopo_dihedral_all.h Copied from src/neigh_half_bin.h
	A			src/ntopo_dihedral_partial.cpp
	P			src/ntopo_dihedral_partial.h Copied from src/neigh_half_bin.h
	A			src/ntopo_dihedral_template.cpp
	P			src/ntopo_dihedral_template.h Copied from src/neigh_half_bin.h
	A			src/ntopo_improper_all.cpp
	P			src/ntopo_improper_all.h Copied from src/neigh_half_bin.h
	A			src/ntopo_improper_partial.cpp
	P			src/ntopo_improper_partial.h Copied from src/neigh_half_bin.h
	A			src/ntopo_improper_template.cpp
	V			src/{ntopo_improper_template.h ← neigh_half_bin.h}