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Merge pull request #283 from akohlmey/grem-feature

Authored by sjplimp <sjplimp@sandia.gov> on Nov 22 2016, 16:15.

Description

Merge pull request #283 from akohlmey/grem-feature

gREM generalized replica exchange feature for USER-MISC

Details

Committed
GitHub <noreply@github.com>Nov 22 2016, 16:15
Pushed
jungeOct 19 2017, 09:53
Parents
rLAMMPS78932159642f: small comment/whitespace tweak
rLAMMPS0ffa50f8e87a: tweaked author syntax
Branches
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Event Timeline

GitHub <noreply@github.com> committed rLAMMPSd7b542101ae8: Merge pull request #283 from akohlmey/grem-feature (authored by sjplimp <sjplimp@sandia.gov>).Nov 22 2016, 16:15

Merged Changes

CommitAuthorDetailsCommitted
78932159642fAxel Kohlmeyer
small comment/whitespace tweak 
Nov 21 2016
3dff9f20184edstelter92
removed extra file 
Nov 21 2016
dab232c542c1dstelter92
modified temper_grem name to fit conventions, re-ran example to match 
Nov 21 2016
176cde8ed32bAxel Kohlmeyer
minor cleanups 
Nov 18 2016
2862c2081501Axel Kohlmeyer
Merge branch 'master' into grem-feature 
Nov 18 2016
78e018829fd2Axel Kohlmeyer
Merge branch 'grem-feature' of https://github.com/dstelter92/lammps into grem… 
Nov 18 2016
2a026c9ad8eadstelter92
revised temper_grem example, better file management 
Nov 17 2016
4a3091f844efdstelter92
modified temper_grem example with more exchanges 
Nov 17 2016
747c95c52528dstelter92
revised documentation, added temper_grem ref to fix_grem 
Nov 17 2016
5c64934bc812dstelter92
added documention, re-ran temper_grem example 
Nov 17 2016
4e62e58d291dAxel Kohlmeyer/GitHub
Merge pull request #47 from dstelter92/grem-feature 
Nov 17 2016
5ac2d9532ed6dstelter92
Re-run example with debug off 
Nov 17 2016
19ac9d295995dstelter92
turned off dev mode by default in temper_grem 
Nov 17 2016
9f313aac75f9dstelter92
shorter example 
Nov 17 2016
0102c5dadc3bdstelter92
file cleanup 
Nov 17 2016
07e46b797a29dstelter92
added internal tempering in grem with example 
Nov 17 2016
b45d1e37ef0eAxel Kohlmeyer
integrate fix grem docs and update to match current conventions 
Nov 16 2016
2e7fd513d4f9Axel Kohlmeyer
provide fix grem example input for nvt and npt 
Nov 16 2016
82364d10e335Axel Kohlmeyer
Merge branch 'grem-feature' of https://github.com/dstelter92/lammps into grem… 
Nov 16 2016
16c8a307e536dstelter92
removed leftover tex files 
Nov 16 2016
94f14ab0510cdstelter92
spell check, minor typos 
Nov 16 2016
683f514fac6aAxel Kohlmeyer
simplify multi-replica run by passing per-replica parameters as variables on… 
Nov 16 2016
f6179939444fAxel Kohlmeyer
need to apply fix_modify already in fix grem constructor 
Nov 16 2016
4641c9e56844dstelter92
Added basic documentation for grem fix 
Nov 16 2016
705f66aaee7aAxel Kohlmeyer
remove superfluous code 
Nov 16 2016
e57ae1ce3f7eAxel Kohlmeyer
compute scaled kinetic energy tensor without destroying the original data 
Nov 16 2016
950442b8b151dstelter92
added check for nvt vs npt, enabled nvt simulation with fix_grem 
Nov 16 2016
1c68e42ecc02Axel Kohlmeyer
fix_modify is not longer needed 
Nov 14 2016
5f94b318062bAxel Kohlmeyer
add multi-replica example for gREM 
Nov 14 2016
fdf5d68f9ffbAxel Kohlmeyer
allow to extract properties in NH integrator only when they are active 
Nov 14 2016
0c25f3b1d6d9Axel Kohlmeyer
whitespace cleanup 
Nov 14 2016
14c7cf419733Axel Kohlmeyer
retrieve target temperature and pressure from fix npt. add sanity checks. 
Nov 14 2016
26870f223d66Axel Kohlmeyer
add example for gREM 
Nov 14 2016
09544d0698a9Axel Kohlmeyer
bugfix for compute pressure/grem: must make a copy of argument strings 
Nov 14 2016
20daf82463fdAxel Kohlmeyer
initial import of adapted gREM code by David Stelter and Edyta Malolepsza 
Nov 14 2016