Diffusion lammps dcede304dff9

changes for next patch, 2d disc options for spheres, fix external upgrade, bug…
dcede304dff9
Actions

Authored by Steve Plimpton <sjplimp@sandia.gov> on Mar 21 2017, 15:56.

Tags

None

Subscribers

None

Description

changes for next patch, 2d disc options for spheres, fix external upgrade, bug fixes for fix ave/chunk for density calcs, Aidan doc page citation deconvolution

Details

Committed

Steve Plimpton <sjplimp@sandia.gov>

Mar 21 2017, 15:56

Pushed

Oct 19 2017, 09:53

Parents

rLAMMPS145e682ad386: Merge pull request #427 from akohlmey/small-updates-and-corrections

Branches

Unknown

Tags

Unknown

Event Timeline

Steve Plimpton <sjplimp@sandia.gov> committed rLAMMPSdcede304dff9: changes for next patch, 2d disc options for spheres, fix external upgrade, bug… (authored by Steve Plimpton <sjplimp@sandia.gov>).Mar 21 2017, 15:56

Changes (112)
Show All Changes

Very Large Commit

This commit is very large. Load each file individually.

				Path
	M			doc/src/Section_howto.txt
	M			doc/src/Section_tools.txt
	M			doc/src/angle_dipole.txt
	M			doc/src/atom_style.txt
	M			doc/src/compute_chunk_atom.txt
	M			doc/src/compute_coord_atom.txt
	M			doc/src/compute_dpd.txt
	M			doc/src/compute_dpd_atom.txt
	M			doc/src/compute_orientorder_atom.txt
	M			doc/src/compute_pe_atom.txt
	M			doc/src/compute_pressure.txt
	M			doc/src/compute_sna_atom.txt
	M			doc/src/compute_stress_atom.txt
	M			doc/src/compute_temp_cs.txt
	M			doc/src/compute_temp_profile.txt
	M			doc/src/fix_ave_chunk.txt
	M			doc/src/fix_dpd_energy.txt
	M			doc/src/fix_drude_transform.txt
	M			doc/src/fix_eos_cv.txt
	M			doc/src/fix_flow_gauss.txt
	M			doc/src/fix_gcmc.txt
	M			doc/src/fix_langevin.txt
	M			doc/src/fix_langevin_drude.txt
	M			doc/src/fix_langevin_eff.txt
	M			doc/src/fix_lb_pc.txt
	M			doc/src/fix_lb_viscous.txt
	M			doc/src/fix_nh_eff.txt
	M			doc/src/fix_nph_sphere.txt
	M			doc/src/fix_nphug.txt
	M			doc/src/fix_npt_sphere.txt
	M			doc/src/fix_nve_dot.txt
	M			doc/src/fix_nve_dotc_langevin.txt
	M			doc/src/fix_nve_manifold_rattle.txt
	M			doc/src/fix_nve_sphere.txt
	M			doc/src/fix_nvt_manifold_rattle.txt
	M			doc/src/fix_nvt_sllod.txt
	M			doc/src/fix_nvt_sllod_eff.txt
	M			doc/src/fix_nvt_sphere.txt
	M			doc/src/fix_press_berendsen.txt
	M			doc/src/fix_qeq.txt
	M			doc/src/fix_qeq_reax.txt
	M			doc/src/fix_rigid.txt
	M			doc/src/fix_shake.txt
	M			doc/src/fix_shardlow.txt
	M			doc/src/fix_srd.txt
	M			doc/src/fix_temp_berendsen.txt
	M			doc/src/fix_thermal_conductivity.txt
	M			doc/src/fix_viscosity.txt
	M			doc/src/kspace_modify.txt
	M			doc/src/kspace_style.txt
	M			doc/src/neb.txt
	M			doc/src/pair_bop.txt
	M			doc/src/pair_colloid.txt
	M			doc/src/pair_comb.txt
	M			doc/src/pair_coul.txt
	M			doc/src/pair_coul_diel.txt
	M			doc/src/pair_cs.txt
	M			doc/src/pair_dipole.txt
	M			doc/src/pair_dpd_fdt.txt
	M			doc/src/pair_eim.txt
	M			doc/src/pair_gauss.txt
	M			doc/src/pair_gayberne.txt
	M			doc/src/pair_gran.txt
	M			doc/src/pair_lj.txt
	M			doc/src/pair_lj_cubic.txt
	M			doc/src/pair_lj_long.txt
	M			doc/src/pair_lubricate.txt
	M			doc/src/pair_lubricateU.txt
	M			doc/src/pair_meam.txt
	M			doc/src/pair_meam_spline.txt
	M			doc/src/pair_meam_sw_spline.txt
	M			doc/src/pair_modify.txt
	M			doc/src/pair_multi_lucy.txt
	M			doc/src/pair_multi_lucy_rx.txt
	M			doc/src/pair_polymorphic.txt
	M			doc/src/pair_reax.txt
	M			doc/src/pair_reax_c.txt
	M			doc/src/pair_resquared.txt
	M			doc/src/pair_sdk.txt
	M			doc/src/pair_smtbq.txt
	M			doc/src/pair_snap.txt
	M			doc/src/pair_srp.txt
	M			doc/src/pair_sw.txt
	M			doc/src/pair_table.txt
	M			doc/src/pair_tersoff.txt
	M			doc/src/pair_tersoff_mod.txt
	M			doc/src/pair_thole.txt
	M			doc/src/prd.txt
	M			doc/src/read_data.txt
	M			doc/src/run_style.txt
	M			doc/src/set.txt
	M			doc/src/tad.txt
	M			doc/src/tutorial_drude.txt
	M			src/MC/fix_gcmc.cpp
	M			src/MC/fix_gcmc.h
	M			src/atom.cpp
	M			src/fix_ave_chunk.cpp
	M			src/fix_ave_chunk.h
	M			src/fix_external.cpp
	M			src/fix_external.h
	M			src/fix_nh.cpp
	M			src/fix_nh_sphere.cpp
	M			src/fix_nh_sphere.h
	M			src/fix_nve_sphere.cpp
	M			src/fix_nve_sphere.h
	M			src/modify.cpp
	M			src/modify.h
	M			src/region_block.cpp
	M			src/set.cpp
	M			src/set.h
	M			tools/README
	M			tools/smd/dump2vtk_tris.cpp

rLAMMPSdcede304dff9

doc/src/Section_howto.txt

doc/src/Section_tools.txt

doc/src/angle_dipole.txt

doc/src/atom_style.txt

doc/src/compute_chunk_atom.txt

doc/src/compute_coord_atom.txt

doc/src/compute_dpd.txt

doc/src/compute_dpd_atom.txt

doc/src/compute_orientorder_atom.txt

doc/src/compute_pe_atom.txt

doc/src/compute_pressure.txt

doc/src/compute_sna_atom.txt

doc/src/compute_stress_atom.txt

doc/src/compute_temp_cs.txt

doc/src/compute_temp_profile.txt

doc/src/fix_ave_chunk.txt

doc/src/fix_dpd_energy.txt

doc/src/fix_drude_transform.txt

doc/src/fix_eos_cv.txt

doc/src/fix_flow_gauss.txt

doc/src/fix_gcmc.txt

doc/src/fix_langevin.txt

doc/src/fix_langevin_drude.txt

doc/src/fix_langevin_eff.txt

doc/src/fix_lb_pc.txt

doc/src/fix_lb_viscous.txt

doc/src/fix_nh_eff.txt

doc/src/fix_nph_sphere.txt

doc/src/fix_nphug.txt

doc/src/fix_npt_sphere.txt

doc/src/fix_nve_dot.txt

doc/src/fix_nve_dotc_langevin.txt

doc/src/fix_nve_manifold_rattle.txt

doc/src/fix_nve_sphere.txt

doc/src/fix_nvt_manifold_rattle.txt

doc/src/fix_nvt_sllod.txt

doc/src/fix_nvt_sllod_eff.txt

doc/src/fix_nvt_sphere.txt

doc/src/fix_press_berendsen.txt

doc/src/fix_qeq.txt

doc/src/fix_qeq_reax.txt

doc/src/fix_rigid.txt

doc/src/fix_shake.txt

doc/src/fix_shardlow.txt

doc/src/fix_srd.txt

doc/src/fix_temp_berendsen.txt

doc/src/fix_thermal_conductivity.txt

doc/src/fix_viscosity.txt

doc/src/kspace_modify.txt

doc/src/kspace_style.txt

doc/src/neb.txt

doc/src/pair_bop.txt

doc/src/pair_colloid.txt

doc/src/pair_comb.txt

doc/src/pair_coul.txt

doc/src/pair_coul_diel.txt

doc/src/pair_cs.txt

doc/src/pair_dipole.txt

doc/src/pair_dpd_fdt.txt

doc/src/pair_eim.txt

doc/src/pair_gauss.txt

doc/src/pair_gayberne.txt

doc/src/pair_gran.txt

doc/src/pair_lj.txt

doc/src/pair_lj_cubic.txt

doc/src/pair_lj_long.txt

doc/src/pair_lubricate.txt

doc/src/pair_lubricateU.txt

doc/src/pair_meam.txt

doc/src/pair_meam_spline.txt

doc/src/pair_meam_sw_spline.txt

doc/src/pair_modify.txt

doc/src/pair_multi_lucy.txt

doc/src/pair_multi_lucy_rx.txt

doc/src/pair_polymorphic.txt

doc/src/pair_reax.txt

doc/src/pair_reax_c.txt

doc/src/pair_resquared.txt

doc/src/pair_sdk.txt

doc/src/pair_smtbq.txt

doc/src/pair_snap.txt

doc/src/pair_srp.txt

doc/src/pair_sw.txt

doc/src/pair_table.txt

doc/src/pair_tersoff.txt

doc/src/pair_tersoff_mod.txt

doc/src/pair_thole.txt

doc/src/prd.txt

doc/src/read_data.txt

doc/src/run_style.txt

doc/src/set.txt

doc/src/tad.txt

doc/src/tutorial_drude.txt

src/MC/fix_gcmc.cpp

src/MC/fix_gcmc.h

src/atom.cpp

src/fix_ave_chunk.cpp

src/fix_ave_chunk.h

src/fix_external.cpp

src/fix_external.h

src/fix_nh.cpp

src/fix_nh_sphere.cpp

src/fix_nh_sphere.h

src/fix_nve_sphere.cpp

src/fix_nve_sphere.h

src/modify.cpp

src/modify.h

src/region_block.cpp

src/set.cpp

src/set.h

tools/README

tools/smd/dump2vtk_tris.cpp