Diffusion lammps dd67989c7675

Merge pull request #601 from stanmoore1/kokkos_update
dd67989c7675
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Authored by Steve Plimpton <sjplimp@sandia.gov> on Aug 17 2017, 19:32.

Description

Merge pull request #601 from stanmoore1/kokkos_update

Update Kokkos library to v2.03.13

Details

Committed

GitHub <noreply@github.com>

Aug 17 2017, 19:32

Pushed

junge

Oct 19 2017, 09:53

Parents

rLAMMPS8a7a831bd6c0: Remove redundant check in Makefile.kokkos
rLAMMPS00aafef1a851: Merge pull request #597 from ndtrung81/three-body-short-nlist

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GitHub <noreply@github.com> committed rLAMMPSdd67989c7675: Merge pull request #601 from stanmoore1/kokkos_update (authored by Steve Plimpton <sjplimp@sandia.gov>).Aug 17 2017, 19:32

Merged Changes

Commit	Author	Details	Committed
8a7a831bd6c0	Stan Moore	Remove redundant check in Makefile.kokkos	Aug 8 2017
8431ca5fecbc	Stan Moore	Remove tpls directory	Jul 31 2017
13f2d39f55b1	Stan Moore	Update Kokkos library to v2.03.13	Jul 31 2017

Changes (169)
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		Path
M		lib/kokkos/CHANGELOG.md
M		lib/kokkos/Makefile.kokkos
M		lib/kokkos/Makefile.targets
M		lib/kokkos/algorithms/unit_tests/TestOpenMP.cpp
M		lib/kokkos/algorithms/unit_tests/TestRandom.hpp
M		lib/kokkos/algorithms/unit_tests/UnitTestMain.cpp
M		lib/kokkos/benchmarks/bytes_and_flops/main.cpp
M		lib/kokkos/benchmarks/gather/main.cpp
A	(dir)	lib/kokkos/benchmarks/policy_performance/
P		lib/kokkos/benchmarks/policy_performance/Makefile Copied from lib/kokkos/example/tutorial/03_simple_view/Makefile
A		lib/kokkos/benchmarks/policy_performance/main.cpp
A		lib/kokkos/benchmarks/policy_performance/policy_perf_test.hpp
A		lib/kokkos/benchmarks/policy_performance/script_basic_testing.sh
A		lib/kokkos/benchmarks/policy_performance/script_sample_usage.sh
A		lib/kokkos/bin/hpcbind
A		lib/kokkos/bin/kokkos-bind
A		lib/kokkos/bin/runtest
M		lib/kokkos/cmake/kokkos.cmake
M		lib/kokkos/config/master_history.txt
A		lib/kokkos/config/query_cuda_arch.cpp
M		lib/kokkos/config/test_all_sandia
M		lib/kokkos/config/trilinos-integration/shepard_jenkins_run_script_pthread_intel
M		lib/kokkos/config/trilinos-integration/shepard_jenkins_run_script_serial_intel
M		lib/kokkos/containers/performance_tests/Makefile
M		lib/kokkos/containers/performance_tests/TestMain.cpp
M		lib/kokkos/containers/performance_tests/TestOpenMP.cpp
M		lib/kokkos/containers/src/Kokkos_DualView.hpp
M		lib/kokkos/containers/src/Kokkos_DynRankView.hpp
M		lib/kokkos/containers/src/Kokkos_DynamicView.hpp
M		lib/kokkos/containers/unit_tests/TestCuda.cpp
M		lib/kokkos/containers/unit_tests/TestOpenMP.cpp
M		lib/kokkos/containers/unit_tests/TestSerial.cpp
M		lib/kokkos/containers/unit_tests/TestThreads.cpp
A		lib/kokkos/containers/unit_tests/TestViewCtorPropEmbeddedDim.hpp
M		lib/kokkos/containers/unit_tests/UnitTestMain.cpp
M		lib/kokkos/core/perf_test/Makefile
M		lib/kokkos/core/perf_test/PerfTestMain.cpp
A		lib/kokkos/core/src/Cuda/KokkosExp_Cuda_IterateTile_Refactor.hpp
M		lib/kokkos/core/src/Cuda/Kokkos_CudaExec.hpp
M		lib/kokkos/core/src/Cuda/Kokkos_CudaSpace.cpp
M		lib/kokkos/core/src/Cuda/Kokkos_Cuda_Impl.cpp
P		lib/kokkos/core/src/Cuda/Kokkos_Cuda_Locks.cpp Copied from lib/kokkos/core/src/impl/Kokkos_Atomic_Decrement.hpp
A		lib/kokkos/core/src/Cuda/Kokkos_Cuda_Locks.hpp
M		lib/kokkos/core/src/Cuda/Kokkos_Cuda_Parallel.hpp
M		lib/kokkos/core/src/Cuda/Kokkos_Cuda_ReduceScan.hpp
M		lib/kokkos/core/src/Cuda/Kokkos_Cuda_Task.cpp
M		lib/kokkos/core/src/Cuda/Kokkos_Cuda_Task.hpp
M		lib/kokkos/core/src/Cuda/Kokkos_Cuda_Team.hpp
A		lib/kokkos/core/src/Cuda/Kokkos_Cuda_UniqueToken.hpp
M		lib/kokkos/core/src/Cuda/Kokkos_Cuda_View.hpp
P		lib/kokkos/core/src/Cuda/Kokkos_Cuda_WorkGraphPolicy.hpp Copied from lib/kokkos/core/src/impl/Kokkos_Serial_Task.hpp
M		lib/kokkos/core/src/KokkosExp_MDRangePolicy.hpp
M		lib/kokkos/core/src/Kokkos_Atomic.hpp
M		lib/kokkos/core/src/Kokkos_Concepts.hpp
M		lib/kokkos/core/src/Kokkos_Core.hpp
M		lib/kokkos/core/src/Kokkos_Core_fwd.hpp
A		lib/kokkos/core/src/Kokkos_Crs.hpp
M		lib/kokkos/core/src/Kokkos_Cuda.hpp
M		lib/kokkos/core/src/Kokkos_CudaSpace.hpp
M		lib/kokkos/core/src/Kokkos_ExecPolicy.hpp
M		lib/kokkos/core/src/Kokkos_HBWSpace.hpp
M		lib/kokkos/core/src/Kokkos_HostSpace.hpp
M		lib/kokkos/core/src/Kokkos_Layout.hpp
M		lib/kokkos/core/src/Kokkos_Macros.hpp
P		lib/kokkos/core/src/Kokkos_MasterLock.hpp Copied from lib/kokkos/core/unit_test/UnitTestMainInit.cpp
M		lib/kokkos/core/src/Kokkos_MemoryPool.hpp
M		lib/kokkos/core/src/Kokkos_MemoryTraits.hpp
M		lib/kokkos/core/src/Kokkos_OpenMP.hpp
M		lib/kokkos/core/src/Kokkos_Parallel.hpp
M		lib/kokkos/core/src/Kokkos_Parallel_Reduce.hpp
M		lib/kokkos/core/src/Kokkos_Serial.hpp
M		lib/kokkos/core/src/Kokkos_TaskScheduler.hpp
P		lib/kokkos/core/src/Kokkos_UniqueToken.hpp Copied from lib/kokkos/core/src/impl/Kokkos_spinwait.hpp
M		lib/kokkos/core/src/Kokkos_View.hpp
A		lib/kokkos/core/src/Kokkos_WorkGraphPolicy.hpp
M		lib/kokkos/core/src/OpenMP/Kokkos_OpenMP_Exec.cpp
P		lib/kokkos/core/src/OpenMP/Kokkos_OpenMP_Exec.hpp Copied to lib/kokkos/core/src/OpenMP/Kokkos_OpenMP_Team.hpp
M		lib/kokkos/core/src/OpenMP/Kokkos_OpenMP_Parallel.hpp
M		lib/kokkos/core/src/OpenMP/Kokkos_OpenMP_Task.cpp
P		lib/kokkos/core/src/OpenMP/Kokkos_OpenMP_Task.hpp Copied to multiple locations: lib/kokkos/core/src/OpenMP/Kokkos_OpenMP_WorkGraphPolicy.hpp lib/kokkos/core/src/impl/Kokkos_Serial_WorkGraphPolicy.hpp
P		lib/kokkos/core/src/OpenMP/Kokkos_OpenMP_Team.hpp Copied from lib/kokkos/core/src/OpenMP/Kokkos_OpenMP_Exec.hpp
P		lib/kokkos/core/src/OpenMP/Kokkos_OpenMP_WorkGraphPolicy.hpp Copied from lib/kokkos/core/src/OpenMP/Kokkos_OpenMP_Task.hpp
M		lib/kokkos/core/src/OpenMPTarget/Kokkos_OpenMPTarget_Exec.hpp
M		lib/kokkos/core/src/Qthreads/Kokkos_QthreadsExec.hpp
M		lib/kokkos/core/src/Threads/Kokkos_ThreadsExec.cpp
M		lib/kokkos/core/src/Threads/Kokkos_ThreadsExec.hpp
M		lib/kokkos/core/src/Threads/Kokkos_ThreadsTeam.hpp
M		lib/kokkos/core/src/Threads/Kokkos_Threads_Parallel.hpp
P		lib/kokkos/core/src/Threads/Kokkos_Threads_WorkGraphPolicy.hpp Copied from lib/kokkos/core/src/impl/Kokkos_Serial_Task.hpp
M		lib/kokkos/core/src/impl/KokkosExp_Host_IterateTile.hpp
M		lib/kokkos/core/src/impl/Kokkos_AnalyzePolicy.hpp
M		lib/kokkos/core/src/impl/Kokkos_Atomic_Compare_Exchange_Strong.hpp
P		lib/kokkos/core/src/impl/Kokkos_Atomic_Decrement.hpp Copied to lib/kokkos/core/src/Cuda/Kokkos_Cuda_Locks.cpp
M		lib/kokkos/core/src/impl/Kokkos_Atomic_Exchange.hpp
M		lib/kokkos/core/src/impl/Kokkos_Atomic_Fetch_Add.hpp
M		lib/kokkos/core/src/impl/Kokkos_Atomic_Fetch_And.hpp
M		lib/kokkos/core/src/impl/Kokkos_Atomic_Fetch_Or.hpp
M		lib/kokkos/core/src/impl/Kokkos_Atomic_Fetch_Sub.hpp
M		lib/kokkos/core/src/impl/Kokkos_Atomic_Increment.hpp
M		lib/kokkos/core/src/impl/Kokkos_Core.cpp
M		lib/kokkos/core/src/impl/Kokkos_FunctorAdapter.hpp
M		lib/kokkos/core/src/impl/Kokkos_HBWSpace.cpp
M		lib/kokkos/core/src/impl/Kokkos_HostSpace.cpp
M		lib/kokkos/core/src/impl/Kokkos_HostThreadTeam.cpp
M		lib/kokkos/core/src/impl/Kokkos_HostThreadTeam.hpp
M		lib/kokkos/core/src/impl/Kokkos_Profiling_Interface.cpp
M		lib/kokkos/core/src/impl/Kokkos_Profiling_Interface.hpp
A		lib/kokkos/core/src/impl/Kokkos_Rendezvous.cpp
P		lib/kokkos/core/src/impl/Kokkos_Rendezvous.hpp Copied from lib/kokkos/core/src/impl/Kokkos_spinwait.hpp
M		lib/kokkos/core/src/impl/Kokkos_Serial.cpp
M		lib/kokkos/core/src/impl/Kokkos_Serial_Task.cpp
P		lib/kokkos/core/src/impl/Kokkos_Serial_Task.hpp Copied to multiple locations: lib/kokkos/core/src/Cuda/Kokkos_Cuda_WorkGraphPolicy.hpp lib/kokkos/core/src/Threads/Kokkos_Threads_WorkGraphPolicy.hpp
P		lib/kokkos/core/src/impl/Kokkos_Serial_WorkGraphPolicy.hpp Copied from lib/kokkos/core/src/OpenMP/Kokkos_OpenMP_Task.hpp
M		lib/kokkos/core/src/impl/Kokkos_SharedAlloc.cpp
M		lib/kokkos/core/src/impl/Kokkos_SharedAlloc.hpp
A		lib/kokkos/core/src/impl/Kokkos_Spinwait.cpp
V		lib/kokkos/core/src/impl/{Kokkos_Spinwait.hpp ← Kokkos_spinwait.hpp}
M		lib/kokkos/core/src/impl/Kokkos_TaskQueue.hpp
M		lib/kokkos/core/src/impl/Kokkos_TaskQueue_impl.hpp
M		lib/kokkos/core/src/impl/Kokkos_ViewArray.hpp
M		lib/kokkos/core/src/impl/Kokkos_ViewCtor.hpp
M		lib/kokkos/core/src/impl/Kokkos_ViewMapping.hpp
M		lib/kokkos/core/src/impl/Kokkos_ViewTile.hpp
D		lib/kokkos/core/src/impl/Kokkos_spinwait.cpp
P		lib/kokkos/core/src/impl/Kokkos_spinwait.hpp Deleted after being copied to multiple locations: lib/kokkos/core/src/Kokkos_UniqueToken.hpp lib/kokkos/core/src/impl/Kokkos_Rendezvous.hpp lib/kokkos/core/src/impl/Kokkos_Spinwait.hpp
M		lib/kokkos/core/unit_test/CMakeLists.txt
M		lib/kokkos/core/unit_test/Makefile
M		lib/kokkos/core/unit_test/TestAggregate.hpp
M		lib/kokkos/core/unit_test/TestDefaultDeviceTypeInit.hpp
M		lib/kokkos/core/unit_test/TestMDRange.hpp
M		lib/kokkos/core/unit_test/TestMemoryPool.hpp
M		lib/kokkos/core/unit_test/TestRange.hpp
A		lib/kokkos/core/unit_test/TestResize.hpp
M		lib/kokkos/core/unit_test/TestTaskScheduler.hpp
M		lib/kokkos/core/unit_test/TestTeamVector.hpp
M		lib/kokkos/core/unit_test/TestTile.hpp
A		lib/kokkos/core/unit_test/TestUniqueToken.hpp
A		lib/kokkos/core/unit_test/TestViewCtorPropEmbeddedDim.hpp
M		lib/kokkos/core/unit_test/TestViewMapping_a.hpp
M		lib/kokkos/core/unit_test/TestViewSubview.hpp
A		lib/kokkos/core/unit_test/TestWorkGraph.hpp
P		lib/kokkos/core/unit_test/UnitTestMain.cpp Copied to multiple locations: lib/kokkos/core/unit_test/cuda/TestCuda_UniqueToken.cpp lib/kokkos/core/unit_test/cuda/TestCuda_WorkGraph.cpp lib/kokkos/core/unit_test/openmp/TestOpenMP_UniqueToken.cpp lib/kokkos/core/unit_test/openmp/TestOpenMP_WorkGraph.cpp lib/kokkos/core/unit_test/serial/TestSerial_WorkGraph.cpp lib/kokkos/core/unit_test/threads/TestThreads_WorkGraph.cpp
P		lib/kokkos/core/unit_test/UnitTestMainInit.cpp Copied to multiple locations: lib/kokkos/core/src/Kokkos_MasterLock.hpp lib/kokkos/core/unit_test/default/TestDefaultDeviceTypeResize.cpp
M		lib/kokkos/core/unit_test/cuda/TestCuda_Other.cpp
P		lib/kokkos/core/unit_test/cuda/TestCuda_UniqueToken.cpp Copied from lib/kokkos/core/unit_test/UnitTestMain.cpp
P		lib/kokkos/core/unit_test/cuda/TestCuda_WorkGraph.cpp Copied from lib/kokkos/core/unit_test/UnitTestMain.cpp
P		lib/kokkos/core/unit_test/default/TestDefaultDeviceTypeResize.cpp Copied from lib/kokkos/core/unit_test/UnitTestMainInit.cpp
M		lib/kokkos/core/unit_test/openmp/TestOpenMP.hpp
M		lib/kokkos/core/unit_test/openmp/TestOpenMP_Other.cpp
P		lib/kokkos/core/unit_test/openmp/TestOpenMP_UniqueToken.cpp Copied from lib/kokkos/core/unit_test/UnitTestMain.cpp
P		lib/kokkos/core/unit_test/openmp/TestOpenMP_WorkGraph.cpp Copied from lib/kokkos/core/unit_test/UnitTestMain.cpp
M		lib/kokkos/core/unit_test/serial/TestSerial_Other.cpp
P		lib/kokkos/core/unit_test/serial/TestSerial_WorkGraph.cpp Copied from lib/kokkos/core/unit_test/UnitTestMain.cpp
M		lib/kokkos/core/unit_test/threads/TestThreads_Other.cpp
P		lib/kokkos/core/unit_test/threads/TestThreads_WorkGraph.cpp Copied from lib/kokkos/core/unit_test/UnitTestMain.cpp
M		lib/kokkos/example/cmake_build/CMakeLists.txt
M		lib/kokkos/example/feint/main.cpp
M		lib/kokkos/example/global_2_local_ids/G2L_Main.cpp
M		lib/kokkos/example/grow_array/main.cpp
P		lib/kokkos/example/tutorial/03_simple_view/Makefile Copied to multiple locations: lib/kokkos/benchmarks/policy_performance/Makefile lib/kokkos/example/tutorial/launch_bounds/Makefile
M		lib/kokkos/example/tutorial/Advanced_Views/Makefile
M		lib/kokkos/example/tutorial/Algorithms/Makefile
M		lib/kokkos/example/tutorial/Hierarchical_Parallelism/Makefile
M		lib/kokkos/example/tutorial/Makefile
A	(dir)	lib/kokkos/example/tutorial/launch_bounds/
A		lib/kokkos/example/tutorial/launch_bounds/CMakeLists.txt
P		lib/kokkos/example/tutorial/launch_bounds/Makefile Copied from lib/kokkos/example/tutorial/03_simple_view/Makefile
A		lib/kokkos/example/tutorial/launch_bounds/launch_bounds_reduce.cpp
M		lib/kokkos/generate_makefile.bash