Diffusion lammps e93f8f888975

Merge pull request #671 from danicholson/user-uef
e93f8f888975
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Authored by Steve Plimpton <sjplimp@sandia.gov> on Oct 18 2017, 21:38.

Description

Merge pull request #671 from danicholson/user-uef

USER-UEF package for extensional flow

Details

Committed

GitHub <noreply@github.com>

Oct 18 2017, 21:38

Pushed

junge

Oct 19 2017, 09:53

Parents

rLAMMPS0f5d7dcc0f53: cmake: added USER-UEF
rLAMMPS35f2cfa0bfaf: Merge pull request #669 from urpedersen/master

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Event Timeline

GitHub <noreply@github.com> committed rLAMMPSe93f8f888975: Merge pull request #671 from danicholson/user-uef (authored by Steve Plimpton <sjplimp@sandia.gov>).Oct 18 2017, 21:38

Merged Changes

Commit	Author	Details	Committed
0f5d7dcc0f53	Christoph Junghans	cmake: added USER-UEF	Oct 7 2017
b6187173e626	Christoph Junghans	Merge branch 'master' into HEAD	Oct 7 2017
11eed234f08a	Axel Kohlmeyer	include dump cfg/uef in commands toctree	Oct 3 2017
af1fc45db0b3	David Nicholson	added citation to doc	Oct 3 2017
b34109af602f	David Nicholson	formatting changes	Oct 3 2017
1dffb0cf82ad	David Nicholson	reran npt_biaxial examples	Oct 3 2017
588b2534c9b0	David Nicholson	Minor fix for FixNHUef constructor	Oct 3 2017
00aef0fe0014	Axel Kohlmeyer	rerun logfiles for USER-UEF example inputs	Oct 2 2017
92d9b361fcda	Axel Kohlmeyer	include USER-UEF styles in PDF version of manual	Oct 2 2017
8acdc8020d9a	Axel Kohlmeyer	add USER-UEF classes to .gitignore	Oct 2 2017
cc09a633a2bc	Axel Kohlmeyer	small code refactor for FixNHUef class	Oct 2 2017
81be9b37de9c	Axel Kohlmeyer	formatting, whitespace and include file/constants cleanup	Oct 2 2017
0c7879e90243	Axel Kohlmeyer	provide compatibility entries in FixNH option parsing for new USER-UEF package	Oct 2 2017
4524b0fa83fa	David Nicholson	rename arg_kludge to uef_arg_kludge	Sep 29 2017
4ef63feea7d3	David Nicholson	reran examples	Sep 29 2017
2a06b75af84c	David Nicholson	doc revisions	Sep 29 2017
a64040ce2d4f	David Nicholson	citeme	Sep 29 2017
480b087c9392	David Nicholson	doc edits, README, and citeme	Sep 29 2017
0029583463c1	David Nicholson	doc edits i missed in earlier commit	Sep 28 2017
c0f1a326616a	David Nicholson	fixed namespace issue	Sep 28 2017
80898b86959c	David Nicholson	first draft of doc done	Sep 28 2017
855b6000efcb	David Nicholson	initial commit. doc is in the works	Sep 28 2017

Changes (43)

		Path
M		cmake/CMakeLists.txt
A		doc/src/JPG/uef_frames.jpg
M		doc/src/Section_commands.txt
M		doc/src/Section_packages.txt
M		doc/src/commands.txt
A		doc/src/compute_pressure_uef.txt
A		doc/src/compute_temp_uef.txt
M		doc/src/computes.txt
A		doc/src/dump_cfg_uef.txt
A		doc/src/fix_nh_uef.txt
M		doc/src/fixes.txt
M		doc/src/lammps.book
A	(dir)	examples/USER/uef/
A		examples/USER/uef/README
A	(dir)	examples/USER/uef/npt_biaxial/
A		examples/USER/uef/npt_biaxial/data.wca
A		examples/USER/uef/npt_biaxial/in.npt_biaxial
A		examples/USER/uef/npt_biaxial/log.22Sep17.npt_biaxial.g++.1
A		examples/USER/uef/npt_biaxial/log.22Sep17.npt_biaxial.g++.4
A	(dir)	examples/USER/uef/nvt_uniaxial/
A		examples/USER/uef/nvt_uniaxial/data.wca
A		examples/USER/uef/nvt_uniaxial/in.nvt_uniaxial
A		examples/USER/uef/nvt_uniaxial/log.22Sep17.npt_uniaxial.g++.1
A		examples/USER/uef/nvt_uniaxial/log.22Sep17.npt_uniaxial.g++.4
M		src/.gitignore
M		src/Makefile
A	(dir)	src/USER-UEF/
A		src/USER-UEF/README
A		src/USER-UEF/compute_pressure_uef.cpp
A		src/USER-UEF/compute_pressure_uef.h
A		src/USER-UEF/compute_temp_uef.cpp
A		src/USER-UEF/compute_temp_uef.h
A		src/USER-UEF/dump_cfg_uef.cpp
A		src/USER-UEF/dump_cfg_uef.h
A		src/USER-UEF/fix_nh_uef.cpp
A		src/USER-UEF/fix_nh_uef.h
A		src/USER-UEF/fix_npt_uef.cpp
A		src/USER-UEF/fix_npt_uef.h
A		src/USER-UEF/fix_nvt_uef.cpp
A		src/USER-UEF/fix_nvt_uef.h
A		src/USER-UEF/uef_utils.cpp
A		src/USER-UEF/uef_utils.h
M		src/fix_nh.cpp