Update Colvars library to version 2016-12-22
f553e230dbcb
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Authored by Giacomo Fiorin <giacomo.fiorin@gmail.com> on Dec 27 2016, 19:17.

Description

Update Colvars library to version 2016-12-22

Significant code cleanup and several fixes (walls + extended Lagrangian)

New harmonicWalls bias to apply confining boundaries with time-dependent force
constant & integration

Committed

Giacomo Fiorin <giacomo.fiorin@gmail.com>

Dec 27 2016, 19:17

Pushed

junge

Oct 19 2017, 09:53

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Giacomo Fiorin <giacomo.fiorin@gmail.com> committed rLAMMPSf553e230dbcb: Update Colvars library to version 2016-12-22 (authored by Giacomo Fiorin <giacomo.fiorin@gmail.com>).Dec 27 2016, 19:17

				Path
	M			doc/src/PDF/colvars-refman-lammps.pdf
	M			doc/src/fix_colvars.txt
	M			lib/colvars/colvar.cpp
	M			lib/colvars/colvar.h
	M			lib/colvars/colvaratoms.cpp
	M			lib/colvars/colvaratoms.h
	M			lib/colvars/colvarbias.cpp
	M			lib/colvars/colvarbias.h
	M			lib/colvars/colvarbias_abf.cpp
	M			lib/colvars/colvarbias_abf.h
	M			lib/colvars/colvarbias_alb.cpp
	M			lib/colvars/colvarbias_alb.h
	M			lib/colvars/colvarbias_histogram.cpp
	M			lib/colvars/colvarbias_histogram.h
	M			lib/colvars/colvarbias_meta.cpp
	M			lib/colvars/colvarbias_meta.h
	M			lib/colvars/colvarbias_restraint.cpp
	M			lib/colvars/colvarbias_restraint.h
	M			lib/colvars/colvarcomp.cpp
	M			lib/colvars/colvarcomp.h
	M			lib/colvars/colvarcomp_angles.cpp
	M			lib/colvars/colvarcomp_coordnums.cpp
	M			lib/colvars/colvarcomp_distances.cpp
	M			lib/colvars/colvarcomp_protein.cpp
	M			lib/colvars/colvarcomp_rotations.cpp
	M			lib/colvars/colvardeps.cpp
	M			lib/colvars/colvardeps.h
	M			lib/colvars/colvargrid.cpp
	M			lib/colvars/colvargrid.h
	M			lib/colvars/colvarmodule.cpp
	M			lib/colvars/colvarmodule.h
	M			lib/colvars/colvarparse.cpp
	M			lib/colvars/colvarparse.h
	M			lib/colvars/colvarproxy.h
	M			lib/colvars/colvarscript.cpp
	M			lib/colvars/colvarscript.h
	M			lib/colvars/colvartypes.cpp
	M			lib/colvars/colvartypes.h
	M			lib/colvars/colvarvalue.cpp
	M			lib/colvars/colvarvalue.h
	M			src/USER-COLVARS/README
	M			src/USER-COLVARS/colvarproxy_lammps.cpp
	M			src/USER-COLVARS/colvarproxy_lammps.h
	M			src/USER-COLVARS/fix_colvars.cpp
	M			src/USER-COLVARS/fix_colvars.h
	M			src/USER-COLVARS/group_ndx.cpp
	M			src/USER-COLVARS/group_ndx.h
	M			src/USER-COLVARS/ndx_group.cpp
	M			src/USER-COLVARS/ndx_group.h