Merge branch 'master' into feat/crystal_plasticity_finite
89116df36865
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Authored by junge on Feb 25 2019, 09:21.

Description

Merge branch 'master' into feat/crystal_plasticity_finite

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Committed

junge

Feb 25 2019, 09:21

Pushed

junge

Feb 25 2019, 09:21

Parents

rMUSPECTRE6838d6519bc7: BUG: incorrect call to gradient integration in tests
rMUSPECTREa476d861d2e3: MAINT:Merge branch 'master' into feat/crystal_plasticity_finite

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junge committed rMUSPECTRE89116df36865: Merge branch 'master' into feat/crystal_plasticity_finite (authored by junge).Feb 25 2019, 09:21

Restricted Application completed building Restricted Buildable.Feb 25 2019, 09:59

Merged Changes

Commit		Author	Details	Committed
6838d6519bc7	D237	junge	BUG: incorrect call to gradient integration in tests	Feb 13 2019
12f98c9a0983	D236	junge	BUG: Gradient integration was not using Formulation	Feb 13 2019
c6f5a64cea36	D235	junge	BUG: fixes bug T2542 and reintroduced a broken test	Feb 1 2019
ddfe8c7ab4c0	D233	RLeute	Visualization and tests finished	Jan 22 2019
3bc6fa3694d8	D234	junge	ENH: Added Material Evaluator	Jan 21 2019
676022f5dfa6	D224	junge	fixed pull-back for MaterialHyperElastoPlastic1	Jan 7 2019
ee949b1469ba	D232	junge	ENH: added MaterialLinearElasticGeneric2	Dec 21 2018
d7e113f47457	D230	junge	ENH: Python Bindings for Generic Linear Elastic Material + doc	Dec 20 2018
92fa33a1065f	D229	muSpectre-bot	MAINT: improved linting	Dec 12 2018

Changes (133)
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				Path
	M			.clang-format
	M			CMakeLists.txt
	M			Jenkinsfile
	A			bin/odd_image.npz
	A			bin/visualisation_example.py
	M			cmake/cpplint.cmake
	A			doc/dev-docs/source/ConstitutiveLaws.rst
	M			doc/dev-docs/source/Doxyfile
	M			doc/dev-docs/source/GettingStarted.rst
	A			doc/dev-docs/source/MaterialLinearElasticGeneric.rst
	M			doc/dev-docs/source/NewMaterial.rst
	M			doc/dev-docs/source/conf.py
	M			doc/dev-docs/source/index.rst
	A			external/cpplint.py
	M			language_bindings/python/CMakeLists.txt
	M			language_bindings/python/bind_py_cell.cc
	M			language_bindings/python/bind_py_common.cc
	M			language_bindings/python/bind_py_fftengine.cc
	M			language_bindings/python/bind_py_field_collection.cc
	M			language_bindings/python/bind_py_material.cc
	M			language_bindings/python/bind_py_material_crystal_plasticity_finite.cc
	M			language_bindings/python/bind_py_material_hyper_elasto_plastic1.cc
	M			language_bindings/python/bind_py_material_linear_elastic1.cc
	M			language_bindings/python/bind_py_material_linear_elastic2.cc
	M			language_bindings/python/bind_py_material_linear_elastic3.cc
	M			language_bindings/python/bind_py_material_linear_elastic4.cc
	A			language_bindings/python/bind_py_material_linear_elastic_generic.cc
	M			language_bindings/python/bind_py_module.cc
	M			language_bindings/python/bind_py_projections.cc
	M			language_bindings/python/bind_py_solvers.cc
	M			language_bindings/python/muSpectre/__init__.py
	A			language_bindings/python/muSpectre/gradient_integration.py
	A			language_bindings/python/muSpectre/vtk_export.py
	M			src/cell/cell_base.hh
	M			src/common/T4_map_proxy.hh
	M			src/common/ccoord_operations.hh
	M			src/common/common.hh
	M			src/common/communicator.hh
	M			src/common/eigen_tools.hh
	M			src/common/field.hh
	M			src/common/field_base.hh
	M			src/common/field_collection_base.hh
	M			src/common/field_collection_global.hh
	M			src/common/field_collection_local.hh
	M			src/common/field_map.hh
	M			src/common/field_map_base.hh
	M			src/common/field_map_matrixlike.hh
	M			src/common/geometry.hh
	M			src/common/iterators.hh
	M			src/common/ref_array.hh
	M			src/common/statefield.hh
	M			src/common/tensor_algebra.hh
	M			src/common/utilities.hh
	M			src/common/voigt_conversion.hh
	M			src/fft/fft_engine_base.cc
	M			src/fft/fft_engine_base.hh
	M			src/fft/fft_utils.hh
	M			src/fft/fftw_engine.cc
	M			src/fft/fftw_engine.hh
	M			src/fft/fftwmpi_engine.cc
	M			src/fft/fftwmpi_engine.hh
	M			src/fft/pfft_engine.cc
	M			src/fft/pfft_engine.hh
	M			src/fft/projection_base.hh
	M			src/fft/projection_default.hh
	M			src/fft/projection_finite_strain_fast.hh
	M			src/materials/CMakeLists.txt
	M			src/materials/material_base.hh
	A			src/materials/material_evaluator.hh
	M			src/materials/material_hyper_elasto_plastic1.hh
	M			src/materials/material_linear_elastic1.hh
	P			src/materials/material_linear_elastic2.hh Copied to src/materials/material_linear_elastic_generic2.hh
	M			src/materials/material_linear_elastic3.hh
	M			src/materials/material_linear_elastic4.cc
	M			src/materials/material_linear_elastic4.hh
	V			src/materials/{material_linear_elastic_generic.cc → material_linear_elastic_generic1.cc}
	V			src/materials/{material_linear_elastic_generic.hh → material_linear_elastic_generic1.hh}
	V			src/materials/{material_linear_elastic_generic1.cc ← material_linear_elastic_generic.cc}
	V			src/materials/{material_linear_elastic_generic1.hh ← material_linear_elastic_generic.hh}
	A			src/materials/material_linear_elastic_generic2.cc
	P			src/materials/material_linear_elastic_generic2.hh Copied from src/materials/material_linear_elastic2.hh
	M			src/materials/material_muSpectre_base.hh
	M			src/materials/materials_toolbox.hh
	M			src/materials/stress_transformations.hh
	M			src/materials/stress_transformations_Kirchhoff_impl.hh
	M			src/materials/stress_transformations_default_case.hh
	M			src/solver/deprecated_solver_base.hh
	M			src/solver/deprecated_solver_cg.hh
	M			src/solver/deprecated_solver_cg_eigen.hh
	M			src/solver/deprecated_solvers.cc
	M			src/solver/solver_cg.hh
	M			src/solver/solver_common.hh
	M			src/solver/solver_eigen.cc
	M			src/solver/solver_eigen.hh
	M			src/solver/solvers.cc
	M			tests/header_test_fields.cc
	M			tests/header_test_ref_array.cc
	M			tests/header_test_statefields.cc
	M			tests/header_test_t4_map.cc
	M			tests/mpi_test_fft_engine.cc
	M			tests/mpi_test_projection.hh
	M			tests/py_comparison_test_material_hyper_elasto_plastic1.cc
	M			tests/py_comparison_test_material_hyper_elasto_plastic1.py
	M			tests/python_binding_tests.py
	A			tests/python_comparison_test_material_linear_elastic1.py
	M			tests/python_exact_reference_elastic_test.py
	M			tests/python_exact_reference_plastic_test.py
	A			tests/python_material_evaluator_test.py
	A			tests/python_material_linear_elastic_generic1_test.py
	A			tests/python_material_linear_elastic_generic2_test.py
	A			tests/python_material_linear_elastic_generic_test.py
	M			tests/python_mpi_material_linear_elastic4_test.py
	A			tests/python_muSpectre_gradient_integration_test.py
	A			tests/python_muSpectre_vtk_export_test.py
	M			tests/python_test_imports.py
	M			tests/test_cell_base.cc
	M			tests/test_fftw_engine.cc
	M			tests/test_field_collections.hh
	M			tests/test_field_collections_1.cc
	M			tests/test_field_collections_2.cc
	M			tests/test_field_collections_3.cc
	M			tests/test_geometry.cc
	M			tests/test_goodies.hh
	A			tests/test_material_evaluator.cc
	M			tests/test_material_hyper_elasto_plastic1.cc
	M			tests/test_material_linear_elastic1.cc
	M			tests/test_material_linear_elastic2.cc
	M			tests/test_material_linear_elastic3.cc
	M			tests/test_material_linear_elastic4.cc
	M			tests/test_material_linear_elastic_generic.cc
	M			tests/test_materials_toolbox.cc
	M			tests/test_projection.hh
	M			tests/test_solver_newton_cg.cc