Diffusion pypulseq 0bdc8a6b65de

Merge pull request #9 from imr-framework/joss-submission
0bdc8a6b65de
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Authored by Keerthi Sravan Ravi <ks3621@columbia.edu> on Aug 21 2019, 22:48.

Description

Merge pull request #9 from imr-framework/joss-submission

JOSS submission

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Committed

GitHub <noreply@github.com>

Aug 21 2019, 22:48

Pushed

ChrisCH

Jul 14 2022, 10:42

Parents

rPYPULSEQ6070c654190c: Update paper.md
rPYPULSEQ76f30df8478d: Update issue templates

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GitHub <noreply@github.com> committed rPYPULSEQ0bdc8a6b65de: Merge pull request #9 from imr-framework/joss-submission (authored by Keerthi Sravan Ravi <ks3621@columbia.edu>).Aug 21 2019, 22:48

Merged Changes

Commit	Author	Details	Committed
6070c654190c	Keerthi Sravan Ravi	Update paper.md	Aug 21 2019
60b1f4970d6a	Keerthi Sravan Ravi	Update paper.md	Aug 21 2019
c355ca05f547	Keerthi Sravan Ravi	Add JOSS paper, community guidelines; update setup	Aug 21 2019
e5055aafd9fa	Keerthi Sravan Ravi	Fix #8	Aug 21 2019
26715e9db902	Keerthi Sravan Ravi	Fix conf.py	Aug 20 2019
4b242cb12ce6	Keerthi Sravan Ravi	Add Sphinx documentation	Aug 20 2019
3b787d7b5f5b	Keerthi Sravan Ravi	Update code documentation	Aug 20 2019
03b7fed7df36	Keerthi Sravan Ravi	Move SAR into pypulseq.utils	Aug 20 2019
9ac2caa4f72c	Keerthi Sravan Ravi	Modify SAR package	Aug 20 2019
290e13a096b9	Keerthi Sravan Ravi	Update setup.py to enforce Python 3.6 requirement	Aug 20 2019
b39a6ce63cd1	Sairam Geethanath/Keerthi Sravan Ravi	Only 1 sample file for checking SAR	Aug 20 2019
d0b606faa87c	Sairam Geethanath/Keerthi Sravan Ravi	Added docstring to def calc SAR	Aug 20 2019
5cdf7a0802b7	Gehua Tong/Keerthi Sravan Ravi	Correct formatting for Tx docstrings	Aug 20 2019
5e8a729e9fb2	Sairam Geethanath/Keerthi Sravan Ravi	Docstring edits	Aug 20 2019
22e1a66a1bd7	Keerthi Sravan Ravi	Fix docstrings; reformat	Aug 20 2019
9e9f91417d07	Sairam Geethanath/Keerthi Sravan Ravi	Indentation and enumeration for code documentation	Aug 20 2019
360bdcb97eea	Sairam Geethanath/Keerthi Sravan Ravi	Using constants.py functionality	Aug 20 2019
e06899bc23df	Keerthi Sravan Ravi	Fix paths in constants.py	Aug 20 2019
54ede71ac82b	Sairam Geethanath/Keerthi Sravan Ravi	Path fixes for SAR and definition documentation	Aug 20 2019
b2a09e23f959	Keerthi Sravan Ravi	Refactor #2	Aug 20 2019
279f273638bd	Keerthi Sravan Ravi	Refactor #1	Aug 20 2019
f1658e0d7034	Keerthi Sravan Ravi/GitHub	Update README.md	Jul 20 2019
5a0b0c6deb33	Keerthi Sravan Ravi/GitHub	Update README.md	Jul 20 2019
871bf5726c56	Keerthi Sravan Ravi	Add JOSS requisites and update README	Jul 20 2019
6a1d34df8893	Keerthi Sravan Ravi	Add JOSS requisites	Jul 20 2019
a60fb0cf3aee	Keerthi Sravan Ravi	Fix bug in reading gradients from a .seq file	Jul 20 2019

Changes (75)

		Path
A		CODE_OF_CONDUCT.md
A		CONTRIBUTING.md
M		README.md
P		__init__.py Copied from pypulseq/Sequence/__init__.py
A	(dir)	doc/
A		doc/Makefile
A		doc/make.bat
A	(dir)	doc/source/
A		doc/source/conf.py
A		doc/source/index.rst
A		doc/source/modules.rst
A		doc/source/pypulseq.Sequence.rst
A		doc/source/pypulseq.rst
A		doc/source/pypulseq.utils.SAR.rst
A		doc/source/pypulseq.utils.rst
A	(dir)	doc/walkthrough/
A		doc/walkthrough/gre_1.png
A		doc/walkthrough/gre_2.png
A		doc/walkthrough/gre_walkthrough.ipynb
A		logo.png
A		paper.bib
A		paper.md
M		pypulseq/Sequence/block.py
M		pypulseq/Sequence/read_seq.py
M		pypulseq/Sequence/sequence.py
M		pypulseq/Sequence/test_report.py
M		pypulseq/Sequence/write_seq.py
M		pypulseq/add_gradients.py
M		pypulseq/add_ramps.py
M		pypulseq/align.py
M		pypulseq/calc_duration.py
M		pypulseq/calc_ramp.py
M		pypulseq/calc_rf_center.py
M		pypulseq/check_timing.py
M		pypulseq/compress_shape.py
M		pypulseq/convert.py
M		pypulseq/decompress_shape.py
M		pypulseq/event_lib.py
M		pypulseq/make_adc.py
M		pypulseq/make_arbitrary_grad.py
M		pypulseq/make_arbitrary_rf.py
M		pypulseq/make_block_pulse.py
M		pypulseq/make_delay.py
M		pypulseq/make_extended_trapezoid.py
M		pypulseq/make_gauss_pulse.py
M		pypulseq/make_sinc_pulse.py
M		pypulseq/make_trap_pulse.py
M		pypulseq/opts.py
M		pypulseq/points_to_waveform.py
A	(dir)	pypulseq/seq_examples/mat_check/
A		pypulseq/seq_examples/mat_check/write_epi_spin_echo.py
A		pypulseq/seq_examples/mat_check/write_fid.py
A		pypulseq/seq_examples/mat_check/write_gre3D.py
A	(dir)	pypulseq/seq_examples/old/
A		pypulseq/seq_examples/old/gre_demo.py
A		pypulseq/seq_examples/old/haste_demo.py
A		pypulseq/seq_examples/old/ir-se_demo.py
A		pypulseq/seq_examples/old/radial_2d_fid.py
A		pypulseq/seq_examples/old/se_demo.py
A		pypulseq/seq_examples/old/se_epi_demo.py
A	(dir)	pypulseq/seq_examples/wip/
A		pypulseq/seq_examples/wip/spiral_2d_nshot.py
A		pypulseq/seq_examples/wip/test.py
A		pypulseq/seq_examples/wip/write_external_field_map.py
A		pypulseq/seq_examples/wip/write_selective_rf.py
M		pypulseq/split_gradient.py
M		pypulseq/split_gradient_at.py
M		pypulseq/traj_to_grad.py
A	(dir)	pypulseq/utils/SAR/
A		pypulseq/utils/SAR/QGlobal.mat
A		pypulseq/utils/SAR/SAR_calc.py
P		pypulseq/utils/SAR/__init__.py Copied from pypulseq/Sequence/__init__.py
M		pypulseq/utils/k2g.py
M		pypulseq/utils/vds_2d.py
M		setup.py