Diffusion SCITAS examples on how to run on the clusters bf427890bfa9

Fixed all example scripts to invoke a login shell
bf427890bfa9
Actions

Authored by rmsilva on Dec 8 2015, 09:56.

Description

Fixed all example scripts to invoke a login shell

Invoking a login shell ensures the module scripts are sourced in the machine
where the job is started. Until now they relied on the fact that the
environment is inherited from the login node, but this was not robust.

Signed-off-by: Ricardo Silva <ricardo.silva@epfl.ch>

Details

Committed

rmsilva

Dec 8 2015, 10:01

Pushed

• rezzonico

Jun 17 2016, 10:15

Parents

rSCEXAMPLESd8c943c3379c: Added some explanations

Branches

Unknown

Tags

Unknown

Event Timeline

rmsilva committed rSCEXAMPLESbf427890bfa9: Fixed all example scripts to invoke a login shell (authored by rmsilva).Dec 8 2015, 10:01

Changes (30)

				Path
	M			Advanced/FakeJobArray/FakeJobArray.sh
	M			Advanced/HPL-hybrid/hpl-hybrid.run
	M			Advanced/HPL-mpi/hpl.run
	M			Advanced/HPL-omp/hpl-omp.run
	M			Advanced/JobArray/array.run
	M			Advanced/JobArray/hello.sh
	M			Advanced/OccupyOneNode/occupy_one_node.sh
	M			Basic/MPI/Hello/hello.run
	M			Basic/MPI/Minimalist/hello.run
	M			Basic/MPI/Ring/ring.run
	M			Basic/Pi_integral/pi.run
	M			Basic/Pi_mc/pi_mc.run
	M			Basic/hello.run
	M			Modules/Abaqus/Explicit/abaqus_test.sub
	M			Modules/Abaqus/Standard/abaqus_test.sub
	M			Modules/Comsol/comsol.run
	M			Modules/GPU_amber/job.amber.slurm
	M			Modules/GPU_gromacs/job.gromacs.slurm
	M			Modules/Matlab/Comsol-trick/run-bg.slurm
	M			Modules/Matlab/FakeArray/FakeJobArray.sh
	M			Modules/Matlab/JobArray/matlab-array.run
	M			Modules/Matlab/Simple/matlab.run
	M			Modules/ParaView/paraview.run
	M			Modules/adf/job.adf.slurm
	M			Modules/cp2k/job.cp2k.slurm
	M			Modules/cpmd/job.cpmd.slurm
	M			Modules/fluent/job.fluent.slurm
	M			Modules/gaussian/job.gaussian.slurm
	M			Modules/molpro/job.molpro.slurm
	M			Modules/vasp/test/job.vasp.slurm