Diffusion Sparse coupled logistic regression bb18ee5f9edd

Added files for the framework
bb18ee5f9edd
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Authored by Thomas Bolton <thomas.arthur.bolton@gmail.com> on Jun 9 2020, 08:50.

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Added files for the framework

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Committed

Thomas Bolton <thomas.arthur.bolton@gmail.com>

Jun 9 2020, 08:50

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bolton

Jun 9 2020, 08:15

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rSLR68ccf309b343: Removed old file versions

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Thomas Bolton <thomas.arthur.bolton@gmail.com> committed rSLRbb18ee5f9edd: Added files for the framework (authored by Thomas Bolton <thomas.arthur.bolton@gmail.com>).Jun 9 2020, 08:50

Changes (97)

		Path
A	(dir)	LogisticRegressionFramework/
A	(dir)	LogisticRegressionFramework/Framework/
A	(dir)	LogisticRegressionFramework/Framework/Alternatives/
A		LogisticRegressionFramework/Framework/Alternatives/RSCHMM_ComputeWZ_NOB.m
A		LogisticRegressionFramework/Framework/Alternatives/RSCHMM_ComputeWZ_NOG.m
A		LogisticRegressionFramework/Framework/Alternatives/RSCHMM_Compute_HMM.m
A		LogisticRegressionFramework/Framework/Alternatives/RSCHMM_NOB.m
A		LogisticRegressionFramework/Framework/Alternatives/RSCHMM_NOG.m
A		LogisticRegressionFramework/Framework/Alternatives/RSCHMM_Solve_Equation_NOB.m
A		LogisticRegressionFramework/Framework/Alternatives/RSCHMM_Solve_Equation_NOG.m
A		LogisticRegressionFramework/Framework/Compute_HMM_2STATE.m
A		LogisticRegressionFramework/Framework/RSCHMM.m
A		LogisticRegressionFramework/Framework/RSCHMM_Binarize.m
A		LogisticRegressionFramework/Framework/RSCHMM_ComputeLq.m
A		LogisticRegressionFramework/Framework/RSCHMM_ComputeLq_Optimized.m
A		LogisticRegressionFramework/Framework/RSCHMM_ComputeLq_Optimized_Deluxe.m
A		LogisticRegressionFramework/Framework/RSCHMM_ComputeLq_Optimized_Shiney.m
A		LogisticRegressionFramework/Framework/RSCHMM_ComputeTransitions.m
A		LogisticRegressionFramework/Framework/RSCHMM_ComputeWZ.m
A		LogisticRegressionFramework/Framework/RSCHMM_ComputeWZ_Optimized.m
A		LogisticRegressionFramework/Framework/RSCHMM_ComputeWZ_Optimized_Deluxe.m
A		LogisticRegressionFramework/Framework/RSCHMM_ComputeWZ_Optimized_Shiney.m
A		LogisticRegressionFramework/Framework/RSCHMM_Eval_Logistic.m
A		LogisticRegressionFramework/Framework/RSCHMM_Eval_Logistic_Optimized.m
A		LogisticRegressionFramework/Framework/RSCHMM_Optimized.m
A		LogisticRegressionFramework/Framework/RSCHMM_Optimized_ROI.m
A		LogisticRegressionFramework/Framework/RSCHMM_Optimized_ROI_Deluxe.m
A		LogisticRegressionFramework/Framework/RSCHMM_Optimized_ROI_Shiney.m
A		LogisticRegressionFramework/Framework/RSCHMM_Select_WorkingSet.m
A		LogisticRegressionFramework/Framework/RSCHMM_Select_WorkingSet_Optimized.m
A		LogisticRegressionFramework/Framework/RSCHMM_Shrinkage_Estimate.m
A		LogisticRegressionFramework/Framework/RSCHMM_Shrinkage_Estimate_Optimized.m
A		LogisticRegressionFramework/Framework/RSCHMM_Shrinkage_Estimate_Optimized_Deluxe.m
A		LogisticRegressionFramework/Framework/RSCHMM_Shrinkage_Estimate_Optimized_Shiney.m
A		LogisticRegressionFramework/Framework/RSCHMM_SolveFully.m
A		LogisticRegressionFramework/Framework/RSCHMM_Solve_Equation.m
A		LogisticRegressionFramework/Framework/RSCHMM_Solve_Equation_Optimized.m
A		LogisticRegressionFramework/Framework/RSCHMM_Solve_Equation_Optimized_Deluxe.m
A		LogisticRegressionFramework/Framework/RSCHMM_Solve_Equation_Optimized_Deluxe_SingleVersion.m
A		LogisticRegressionFramework/Framework/RSCHMM_Solve_Equation_Optimized_Shiney.m
A		LogisticRegressionFramework/Framework/Shrinkage_Operator.m
A		LogisticRegressionFramework/Framework/Shrinkage_Operator_Shiney.m
A	(dir)	LogisticRegressionFramework/PostProcessing/
A		LogisticRegressionFramework/PostProcessing/RSCHMM_ComputeDeltaP.m
A		LogisticRegressionFramework/PostProcessing/RSCHMM_ComputeDeltaP_Optimized.m
A		LogisticRegressionFramework/PostProcessing/RSCHMM_ComputeError.m
A		LogisticRegressionFramework/RSCHMM_ComputeSenSpec.m
A		LogisticRegressionFramework/RSCHMM_ConstructPopulationGraph.m
A		LogisticRegressionFramework/RSCHMM_DetermineCommunities.m
A		LogisticRegressionFramework/RSCHMM_DetermineCommunities_Experimental.m
A		LogisticRegressionFramework/RSCHMM_Generate_Coefficients.m
A		LogisticRegressionFramework/RSCHMM_HowManyRegions.m
A		LogisticRegressionFramework/RSCHMM_InspectCoefs.m
A		LogisticRegressionFramework/RSCHMM_PickAlpha.m
A		LogisticRegressionFramework/RSCHMM_PlotLL.m
A		LogisticRegressionFramework/RSCHMM_SelectEdgeType.m
A		LogisticRegressionFramework/RSCHMM_Simulate_Balanced.m
A	(dir)	LogisticRegressionFramework/Simulations/
A		LogisticRegressionFramework/Simulations/RSCHMM_PickState.m
A		LogisticRegressionFramework/Simulations/RSCHMM_Simulate.m
A		LogisticRegressionFramework/Simulations/RSCHMM_Simulate_Newlook.m
A		LogisticRegressionFramework/Simulations/RSCHMM_Simulate_Subject.m
A		LogisticRegressionFramework/Simulations/RSCHMM_Simulate_Subject_Balanced.m
A		LogisticRegressionFramework/Simulations/RSCHMM_Simulate_Subject_Newlook.m
A		LogisticRegressionFramework/Simulations/jUpperTriMatToVec.m
A		LogisticRegressionFramework/Simulations/jVecToUpperTriMat.m
A	(dir)	OtherApproaches/
A		OtherApproaches/CBIG_RL2017_ar_mls.m
A		OtherApproaches/PPA.m
A		OtherApproaches/RSCHMM_MARNull.m
A		OtherApproaches/RSCHMM_SolveCS.m
A		OtherApproaches/RSCHMM_SolveGLasso.m
A		OtherApproaches/RSCHMM_SolveMAR.m
A		OtherApproaches/RSCHMM_SolveTaglia.m
A	(dir)	OtherApproaches/SparseECfinder/
A		OtherApproaches/SparseECfinder/ReadMe.txt
A		OtherApproaches/SparseECfinder/con_finder.m
A		OtherApproaches/SparseECfinder/csd_array.m
A		OtherApproaches/SparseECfinder/csd_array_bootstrap.m
A		OtherApproaches/SparseECfinder/csd_array_nulldist.m
A		OtherApproaches/SparseECfinder/gradientconjugate_lasso.m
A		OtherApproaches/graphicalLasso.m
A		RSCHMM_Computations_Figure2.m
A		RSCHMM_Computations_Figure3.m
A		RSCHMM_Computations_Figure4.m
A		RSCHMM_Figure4_Simulations_Shiney.m
A		RSCHMM_PlotTP.m
A		RSCHMM_PlotTP_Experimental.m
A		RSCHMM_Simulations_Figure2.m
A		RSCHMM_Simulations_Figure3.m
A		RSCHMM_Simulations_Figure4.m
A		Script_Compare_Methods.m
A		Script_Figure1.m
A		Script_Figure2.m
A		Script_Figure3.m
A		Script_Figure4.m
A		Script_Figure5b.m