Diffusion SpecMiCP / ReactMiCP 90dfd13fe99d

impr:organization review directories and cmake files of specmicp_common
90dfd13fe99d
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Authored by georget on Feb 6 2016, 21:22.

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impr:organization review directories and cmake files of specmicp_common

specmicp_common got it's own directory. Also odeint get into it.

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Committed

Feb 6 2016, 21:29

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rSPECMICP8985c1c82ad6: impr:unsaturated adapt reactmicp_unsaturated to new plugin configuration

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georget committed rSPECMICP90dfd13fe99d: impr:organization review directories and cmake files of specmicp_common (authored by georget).Feb 6 2016, 21:29

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				Path
	V			src/{ → specmicp_common}/macros.hpp
	D			src/odeint
	D			src/odeint/CMakeLists.txt
	V			src/{ → specmicp_common}/odeint/butcher_tableau.hpp
	V			src/{ → specmicp_common}/odeint/odeint_types.hpp
	V			src/{ → specmicp_common}/odeint/runge_kutta_step.hpp
	V			src/{ → specmicp_common}/odeint/runge_kutta_step.inl
	V			src/{ → specmicp_common}/odeint/runge_kutta_step_structs.hpp
	D			src/physics
	D			src/physics/CMakeLists.txt
	V			src/{ → specmicp_common}/physics/constants.hpp
	D			src/physics/io
	V			src/{ → specmicp_common}/physics/io/configuration.cpp
	V			src/{ → specmicp_common}/physics/io/configuration.hpp
	V			src/{ → specmicp_common}/physics/io/units.cpp
	V			src/{ → specmicp_common}/physics/io/units.hpp
	V			src/{ → specmicp_common}/physics/laws.cpp
	V			src/{ → specmicp_common}/physics/laws.hpp
	V			src/{ → specmicp_common}/physics/maths.hpp
	V			src/{ → specmicp_common}/physics/units.cpp
	V			src/{ → specmicp_common}/physics/units.hpp
	V			src/{ → specmicp_common}/physics/unsaturated_laws.cpp
	V			src/{ → specmicp_common}/physics/unsaturated_laws.hpp
	A		(dir)	src/specmicp_common/
	A			src/specmicp_common/CMakeLists.txt
	V			src/{specmicp_common ← utils}/cached_vector.hpp
	A		(dir)	src/specmicp_common/cli/
	A			src/specmicp_common/cli/CMakeLists.txt
	V			src/{specmicp_common ← utils}/cli/parser.cpp
	V			src/{specmicp_common ← utils}/cli/parser.hpp
	V			src/{specmicp_common ← utils}/compat.hpp
	V			src/{specmicp_common ← utils}/dateandtime.cpp
	V			src/{specmicp_common ← utils}/dateandtime.hpp
	A		(dir)	src/specmicp_common/eigen/
	A			src/specmicp_common/eigen/CMakeLists.txt
	V			src/{specmicp_common/eigen ← utils}/incl_eigen_core.hpp
	V			src/{specmicp_common/eigen ← utils}/incl_eigen_sparse_core.hpp
	V			src/{specmicp_common/eigen ← utils}/value_checker.hpp
	V			src/{specmicp_common/eigen ← utils}/vector_checker.hpp
	V			src/{specmicp_common ← utils}/filesystem.cpp
	V			src/{specmicp_common ← utils}/filesystem.hpp
	A		(dir)	src/specmicp_common/io/
	A			src/specmicp_common/io/CMakeLists.txt
	V			src/{specmicp_common ← utils}/io/configuration.cpp
	V			src/{specmicp_common ← utils}/io/configuration.hpp
	V			src/{specmicp_common ← utils}/io/csv_formatter.cpp
	V			src/{specmicp_common ← utils}/io/csv_formatter.hpp
	V			src/{specmicp_common ← utils}/io/format.cpp
	V			src/{specmicp_common ← utils}/io/format.hpp
	V			src/{specmicp_common ← utils}/io/hdf5_eigen.hpp
	V			src/{specmicp_common ← utils}/io/hdf5_eigen.inl
	V			src/{specmicp_common ← utils}/io/hdf5_timesteps.cpp
	V			src/{specmicp_common ← utils}/io/hdf5_timesteps.hpp
	V			src/{specmicp_common ← utils}/io/safe_config.cpp
	V			src/{specmicp_common ← utils}/io/safe_config.hpp
	V			src/{specmicp_common ← utils}/io/specmicp_hdf5.cpp
	V			src/{specmicp_common ← utils}/io/specmicp_hdf5.hpp
	V			src/{specmicp_common ← utils}/io/yaml.cpp
	V			src/{specmicp_common ← utils}/io/yaml.hpp
	V			src/{specmicp_common ← utils}/log.cpp
	V			src/{specmicp_common ← utils}/log.hpp
	V			src/{specmicp_common ← }/macros.hpp
	V			src/{specmicp_common ← utils}/moving_average.cpp
	V			src/{specmicp_common ← utils}/moving_average.hpp
	A		(dir)	src/specmicp_common/odeint/
	A			src/specmicp_common/odeint/CMakeLists.txt
	V			src/{specmicp_common ← }/odeint/butcher_tableau.hpp
	V			src/{specmicp_common ← }/odeint/odeint_types.hpp
	V			src/{specmicp_common ← }/odeint/runge_kutta_step.hpp
	V			src/{specmicp_common ← }/odeint/runge_kutta_step.inl
	V			src/{specmicp_common ← }/odeint/runge_kutta_step_structs.hpp
	V			src/{specmicp_common ← utils}/options_handler.hpp
	V			src/{specmicp_common ← utils}/perfs_handler.hpp
	A		(dir)	src/specmicp_common/physics/
	A			src/specmicp_common/physics/CMakeLists.txt
	V			src/{specmicp_common ← }/physics/constants.hpp
	A		(dir)	src/specmicp_common/physics/io/
	A			src/specmicp_common/physics/io/CMakeLists.txt
	V			src/{specmicp_common ← }/physics/io/configuration.cpp
	V			src/{specmicp_common ← }/physics/io/configuration.hpp
	V			src/{specmicp_common ← }/physics/io/units.cpp
	V			src/{specmicp_common ← }/physics/io/units.hpp
	V			src/{specmicp_common ← }/physics/laws.cpp
	V			src/{specmicp_common ← }/physics/laws.hpp
	V			src/{specmicp_common ← }/physics/maths.hpp
	V			src/{specmicp_common ← }/physics/units.cpp
	V			src/{specmicp_common ← }/physics/units.hpp
	V			src/{specmicp_common ← }/physics/unsaturated_laws.cpp
	V			src/{specmicp_common ← }/physics/unsaturated_laws.hpp
	V			src/{specmicp_common ← utils}/pimpl_ptr.hpp
	A		(dir)	src/specmicp_common/plugins/
	A			src/specmicp_common/plugins/CMakeLists.txt
	V			src/{specmicp_common ← utils}/plugins/dynamic_library.cpp
	V			src/{specmicp_common ← utils}/plugins/dynamic_library.hpp
	V			src/{specmicp_common ← utils}/plugins/module_base.cpp
	V			src/{specmicp_common ← utils}/plugins/module_base.hpp
	V			src/{specmicp_common ← utils}/plugins/plugin_api_version.h
	V			src/{specmicp_common ← utils}/plugins/plugin_base.cpp
	V			src/{specmicp_common ← utils}/plugins/plugin_base.hpp
	V			src/{specmicp_common ← utils}/plugins/plugin_interface.h
	V			src/{specmicp_common ← utils}/plugins/plugin_manager.cpp
	V			src/{specmicp_common ← utils}/plugins/plugin_manager.hpp
	V			src/{specmicp_common ← utils}/plugins/plugin_types.hpp
	V			src/{specmicp_common ← utils}/range_iterator.hpp
	V			src/{specmicp_common ← utils}/range_iterator.inl
	V			src/{specmicp_common ← utils}/scope_guard.hpp
	A		(dir)	src/specmicp_common/sparse_solvers/
	A			src/specmicp_common/sparse_solvers/CMakeLists.txt
	V			src/{specmicp_common ← utils}/sparse_solvers/sparse_bicgstab.hpp
	V			src/{specmicp_common ← utils}/sparse_solvers/sparse_gmres.hpp
	V			src/{specmicp_common ← utils}/sparse_solvers/sparse_lu.hpp
	V			src/{specmicp_common ← utils}/sparse_solvers/sparse_qr.hpp
	V			src/{specmicp_common ← utils}/sparse_solvers/sparse_solver.hpp
	V			src/{specmicp_common ← utils}/sparse_solvers/sparse_solver_base.hpp
	V			src/{specmicp_common ← utils}/sparse_solvers/sparse_solver_structs.hpp
	V			src/{specmicp_common ← utils}/string_algorithms.cpp
	V			src/{specmicp_common ← utils}/string_algorithms.hpp
	V			src/{specmicp_common ← utils}/timer.cpp
	V			src/{specmicp_common ← utils}/timer.hpp
	V			src/{specmicp_common ← }/types.hpp
	V			src/{ → specmicp_common}/types.hpp
	D			src/utils
	D			src/utils/CMakeLists.txt
	V			src/{utils → specmicp_common}/cached_vector.hpp
	D			src/utils/cli
	V			src/{utils → specmicp_common}/cli/parser.cpp
	V			src/{utils → specmicp_common}/cli/parser.hpp
	V			src/{utils → specmicp_common}/compat.hpp
	V			src/{utils → specmicp_common}/dateandtime.cpp
	V			src/{utils → specmicp_common}/dateandtime.hpp
	V			src/{utils → specmicp_common}/filesystem.cpp
	V			src/{utils → specmicp_common}/filesystem.hpp
	V			src/{utils → specmicp_common/eigen}/incl_eigen_core.hpp
	V			src/{utils → specmicp_common/eigen}/incl_eigen_sparse_core.hpp
	D			src/utils/io
	V			src/{utils → specmicp_common}/io/configuration.cpp
	V			src/{utils → specmicp_common}/io/configuration.hpp
	V			src/{utils → specmicp_common}/io/csv_formatter.cpp
	V			src/{utils → specmicp_common}/io/csv_formatter.hpp
	V			src/{utils → specmicp_common}/io/format.cpp
	V			src/{utils → specmicp_common}/io/format.hpp
	V			src/{utils → specmicp_common}/io/hdf5_eigen.hpp
	V			src/{utils → specmicp_common}/io/hdf5_eigen.inl
	V			src/{utils → specmicp_common}/io/hdf5_timesteps.cpp
	V			src/{utils → specmicp_common}/io/hdf5_timesteps.hpp
	V			src/{utils → specmicp_common}/io/safe_config.cpp
	V			src/{utils → specmicp_common}/io/safe_config.hpp
	V			src/{utils → specmicp_common}/io/specmicp_hdf5.cpp
	V			src/{utils → specmicp_common}/io/specmicp_hdf5.hpp
	V			src/{utils → specmicp_common}/io/yaml.cpp
	V			src/{utils → specmicp_common}/io/yaml.hpp
	V			src/{utils → specmicp_common}/log.cpp
	V			src/{utils → specmicp_common}/log.hpp
	V			src/{utils → specmicp_common}/moving_average.cpp
	V			src/{utils → specmicp_common}/moving_average.hpp
	V			src/{utils → specmicp_common}/options_handler.hpp
	V			src/{utils → specmicp_common}/perfs_handler.hpp
	V			src/{utils → specmicp_common}/pimpl_ptr.hpp
	D			src/utils/plugins
	V			src/{utils → specmicp_common}/plugins/dynamic_library.cpp
	V			src/{utils → specmicp_common}/plugins/dynamic_library.hpp
	V			src/{utils → specmicp_common}/plugins/module_base.cpp
	V			src/{utils → specmicp_common}/plugins/module_base.hpp
	V			src/{utils → specmicp_common}/plugins/plugin_api_version.h
	V			src/{utils → specmicp_common}/plugins/plugin_base.cpp
	V			src/{utils → specmicp_common}/plugins/plugin_base.hpp
	V			src/{utils → specmicp_common}/plugins/plugin_interface.h
	V			src/{utils → specmicp_common}/plugins/plugin_manager.cpp
	V			src/{utils → specmicp_common}/plugins/plugin_manager.hpp
	V			src/{utils → specmicp_common}/plugins/plugin_types.hpp
	V			src/{utils → specmicp_common}/range_iterator.hpp
	V			src/{utils → specmicp_common}/range_iterator.inl
	V			src/{utils → specmicp_common}/scope_guard.hpp
	D			src/utils/sparse_solvers
	V			src/{utils → specmicp_common}/sparse_solvers/sparse_bicgstab.hpp
	V			src/{utils → specmicp_common}/sparse_solvers/sparse_gmres.hpp
	V			src/{utils → specmicp_common}/sparse_solvers/sparse_lu.hpp
	V			src/{utils → specmicp_common}/sparse_solvers/sparse_qr.hpp
	V			src/{utils → specmicp_common}/sparse_solvers/sparse_solver.hpp
	V			src/{utils → specmicp_common}/sparse_solvers/sparse_solver_base.hpp
	V			src/{utils → specmicp_common}/sparse_solvers/sparse_solver_structs.hpp
	V			src/{utils → specmicp_common}/string_algorithms.cpp
	V			src/{utils → specmicp_common}/string_algorithms.hpp
	V			src/{utils → specmicp_common}/timer.cpp
	V			src/{utils → specmicp_common}/timer.hpp
	D			src/utils/tmp.cpp
	V			src/{utils → specmicp_common/eigen}/value_checker.hpp
	V			src/{utils → specmicp_common/eigen}/vector_checker.hpp
	M			tests/CMakeLists.txt
	V			tests/{common ← odeint}/butchertableau.cpp
	M			tests/common/cli.cpp
	M			tests/common/dynamic_loader.cpp
	V			tests/{common ← odeint}/embeddedrungekutta.cpp
	M			tests/common/hdf5_all.cpp
	M			tests/common/laws.cpp
	M			tests/common/misc.cpp
	M			tests/common/plugin_manager.cpp
	M			tests/common/range_iterator.cpp
	M			tests/common/sparse_solvers.cpp
	M			tests/common/test_basic_plugin.cpp
	M			tests/common/units.cpp
	M			tests/common/value_checker.cpp
	M			tests/common/vector_checker.cpp
	M			tests/common/yaml.cpp
	D			tests/odeint
	V			tests/{odeint → common}/butchertableau.cpp
	V			tests/{odeint → common}/embeddedrungekutta.cpp
	D			tests/odeint/test_odeint.cpp

rSPECMICP90dfd13fe99d

src/macros.hpp

src/odeint

src/odeint/CMakeLists.txt

src/odeint/butcher_tableau.hpp

src/odeint/odeint_types.hpp

src/odeint/runge_kutta_step.hpp

src/odeint/runge_kutta_step.inl

src/odeint/runge_kutta_step_structs.hpp

src/physics

src/physics/CMakeLists.txt

src/physics/constants.hpp

src/physics/io

src/physics/io/configuration.cpp

src/physics/io/configuration.hpp

src/physics/io/units.cpp

src/physics/io/units.hpp

src/physics/laws.cpp

src/physics/laws.hpp

src/physics/maths.hpp

src/physics/units.cpp

src/physics/units.hpp

src/physics/unsaturated_laws.cpp

src/physics/unsaturated_laws.hpp

src/specmicp_common/CMakeLists.txt

src/specmicp_common/cached_vector.hpp

src/specmicp_common/cli/CMakeLists.txt

src/specmicp_common/cli/parser.cpp

src/specmicp_common/cli/parser.hpp

src/specmicp_common/compat.hpp

src/specmicp_common/dateandtime.cpp

src/specmicp_common/dateandtime.hpp

src/specmicp_common/eigen/CMakeLists.txt

src/specmicp_common/eigen/incl_eigen_core.hpp

src/specmicp_common/eigen/incl_eigen_sparse_core.hpp

src/specmicp_common/eigen/value_checker.hpp

src/specmicp_common/eigen/vector_checker.hpp

src/specmicp_common/filesystem.cpp

src/specmicp_common/filesystem.hpp

src/specmicp_common/io/CMakeLists.txt

src/specmicp_common/io/configuration.cpp

src/specmicp_common/io/configuration.hpp

src/specmicp_common/io/csv_formatter.cpp

src/specmicp_common/io/csv_formatter.hpp

src/specmicp_common/io/format.cpp

src/specmicp_common/io/format.hpp

src/specmicp_common/io/hdf5_eigen.hpp

src/specmicp_common/io/hdf5_eigen.inl

src/specmicp_common/io/hdf5_timesteps.cpp

src/specmicp_common/io/hdf5_timesteps.hpp

src/specmicp_common/io/safe_config.cpp

src/specmicp_common/io/safe_config.hpp

src/specmicp_common/io/specmicp_hdf5.cpp

src/specmicp_common/io/specmicp_hdf5.hpp

src/specmicp_common/io/yaml.cpp

src/specmicp_common/io/yaml.hpp

src/specmicp_common/log.cpp

src/specmicp_common/log.hpp

src/specmicp_common/macros.hpp

src/specmicp_common/moving_average.cpp

src/specmicp_common/moving_average.hpp

src/specmicp_common/odeint/CMakeLists.txt

src/specmicp_common/odeint/butcher_tableau.hpp

src/specmicp_common/odeint/odeint_types.hpp

src/specmicp_common/odeint/runge_kutta_step.hpp

src/specmicp_common/odeint/runge_kutta_step.inl

src/specmicp_common/odeint/runge_kutta_step_structs.hpp

src/specmicp_common/options_handler.hpp

src/specmicp_common/perfs_handler.hpp

src/specmicp_common/physics/CMakeLists.txt

src/specmicp_common/physics/constants.hpp

src/specmicp_common/physics/io/CMakeLists.txt

src/specmicp_common/physics/io/configuration.cpp

src/specmicp_common/physics/io/configuration.hpp

src/specmicp_common/physics/io/units.cpp

src/specmicp_common/physics/io/units.hpp

src/specmicp_common/physics/laws.cpp

src/specmicp_common/physics/laws.hpp

src/specmicp_common/physics/maths.hpp

src/specmicp_common/physics/units.cpp

src/specmicp_common/physics/units.hpp

src/specmicp_common/physics/unsaturated_laws.cpp

src/specmicp_common/physics/unsaturated_laws.hpp

src/specmicp_common/pimpl_ptr.hpp

src/specmicp_common/plugins/CMakeLists.txt

src/specmicp_common/plugins/dynamic_library.cpp

src/specmicp_common/plugins/dynamic_library.hpp

src/specmicp_common/plugins/module_base.cpp

src/specmicp_common/plugins/module_base.hpp

src/specmicp_common/plugins/plugin_api_version.h

src/specmicp_common/plugins/plugin_base.cpp

src/specmicp_common/plugins/plugin_base.hpp

src/specmicp_common/plugins/plugin_interface.h

src/specmicp_common/plugins/plugin_manager.cpp

src/specmicp_common/plugins/plugin_manager.hpp

src/specmicp_common/plugins/plugin_types.hpp

src/specmicp_common/range_iterator.hpp

src/specmicp_common/range_iterator.inl

src/specmicp_common/scope_guard.hpp

src/specmicp_common/sparse_solvers/CMakeLists.txt

src/specmicp_common/sparse_solvers/sparse_bicgstab.hpp

src/specmicp_common/sparse_solvers/sparse_gmres.hpp

src/specmicp_common/sparse_solvers/sparse_lu.hpp

src/specmicp_common/sparse_solvers/sparse_qr.hpp

src/specmicp_common/sparse_solvers/sparse_solver.hpp

src/specmicp_common/sparse_solvers/sparse_solver_base.hpp

src/specmicp_common/sparse_solvers/sparse_solver_structs.hpp

src/specmicp_common/string_algorithms.cpp

src/specmicp_common/string_algorithms.hpp

src/specmicp_common/timer.cpp

src/specmicp_common/timer.hpp

src/specmicp_common/types.hpp

src/types.hpp

src/utils

src/utils/CMakeLists.txt

src/utils/cached_vector.hpp

src/utils/cli

src/utils/cli/parser.cpp

src/utils/cli/parser.hpp

src/utils/compat.hpp

src/utils/dateandtime.cpp

src/utils/dateandtime.hpp

src/utils/filesystem.cpp

src/utils/filesystem.hpp

src/utils/incl_eigen_core.hpp

src/utils/incl_eigen_sparse_core.hpp

src/utils/io

src/utils/io/configuration.cpp

src/utils/io/configuration.hpp

src/utils/io/csv_formatter.cpp

src/utils/io/csv_formatter.hpp

src/utils/io/format.cpp

src/utils/io/format.hpp

src/utils/io/hdf5_eigen.hpp

src/utils/io/hdf5_eigen.inl

src/utils/io/hdf5_timesteps.cpp

src/utils/io/hdf5_timesteps.hpp

src/utils/io/safe_config.cpp

src/utils/io/safe_config.hpp

src/utils/io/specmicp_hdf5.cpp

src/utils/io/specmicp_hdf5.hpp

src/utils/io/yaml.cpp

src/utils/io/yaml.hpp

src/utils/log.cpp

src/utils/log.hpp

src/utils/moving_average.cpp

src/utils/moving_average.hpp

src/utils/options_handler.hpp

src/utils/perfs_handler.hpp

src/utils/pimpl_ptr.hpp

src/utils/plugins

src/utils/plugins/dynamic_library.cpp

src/utils/plugins/dynamic_library.hpp

src/utils/plugins/module_base.cpp

src/utils/plugins/module_base.hpp

src/utils/plugins/plugin_api_version.h

src/utils/plugins/plugin_base.cpp

src/utils/plugins/plugin_base.hpp

src/utils/plugins/plugin_interface.h

src/utils/plugins/plugin_manager.cpp

src/utils/plugins/plugin_manager.hpp

src/utils/plugins/plugin_types.hpp

src/utils/range_iterator.hpp

src/utils/range_iterator.inl

src/utils/scope_guard.hpp

src/utils/sparse_solvers

src/utils/sparse_solvers/sparse_bicgstab.hpp

src/utils/sparse_solvers/sparse_gmres.hpp

src/utils/sparse_solvers/sparse_lu.hpp

src/utils/sparse_solvers/sparse_qr.hpp

src/utils/sparse_solvers/sparse_solver.hpp

src/utils/sparse_solvers/sparse_solver_base.hpp

src/utils/sparse_solvers/sparse_solver_structs.hpp

src/utils/string_algorithms.cpp

src/utils/string_algorithms.hpp

src/utils/timer.cpp

src/utils/timer.hpp

src/utils/tmp.cpp

src/utils/value_checker.hpp

src/utils/vector_checker.hpp

tests/CMakeLists.txt

tests/common/butchertableau.cpp

tests/common/cli.cpp

tests/common/dynamic_loader.cpp

tests/common/embeddedrungekutta.cpp

tests/common/hdf5_all.cpp

tests/common/laws.cpp

tests/common/misc.cpp

tests/common/plugin_manager.cpp

tests/common/range_iterator.cpp

tests/common/sparse_solvers.cpp

tests/common/test_basic_plugin.cpp

tests/common/units.cpp

tests/common/value_checker.cpp

tests/common/vector_checker.cpp

tests/common/yaml.cpp

tests/odeint

tests/odeint/butchertableau.cpp

tests/odeint/embeddedrungekutta.cpp

tests/odeint/test_odeint.cpp